Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.3e-263 912.5 473 100.0
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 5.9e-131 471.9 419 66.8
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 1.3e-109 401.0 400 58.8
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 4.1e-108 396.0 393 60.8
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 2.8e-104 383.3 393 58.8
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 6.2e-104 382.1 413 55.4
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 8.1e-104 381.7 421 53.9
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 2.4e-103 380.2 409 56.0
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 8.9e-103 378.3 414 54.1
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 8.9e-103 378.3 411 53.8
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 5.8e-102 375.6 392 55.4
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 1.9e-100 370.5 399 55.6
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 1.9e-100 370.5 393 55.2
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 4.1e-100 369.4 501 49.3
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 5.4e-100 369.0 396 54.5
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 7.1e-100 368.6 399 54.6
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 7.1e-100 368.6 396 55.6
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 7.1e-100 368.6 416 51.9
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 1.2e-99 367.9 420 53.6
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 1.2e-99 367.9 421 53.0
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 1.2e-99 367.9 396 55.6
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 1.6e-99 367.5 421 53.9
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 1.6e-99 367.5 421 52.0
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 2.1e-99 367.1 389 54.2
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 4.6e-99 365.9 418 51.4
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 4.6e-99 365.9 417 52.0
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 4.6e-99 365.9 393 55.0
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 4.6e-99 365.9 426 53.5
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 6.0e-99 365.5 418 53.1
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 6.0e-99 365.5 418 53.6
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 7.8e-99 365.2 410 54.1
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 1.0e-98 364.8 413 53.0
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 1.3e-98 364.4 420 52.1
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 1.7e-98 364.0 415 52.8
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.7e-98 364.0 399 54.9
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 2.3e-98 363.6 412 53.6
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 2.3e-98 363.6 402 54.2
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 3.0e-98 363.2 399 54.6
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 3.0e-98 363.2 399 54.6
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 3.0e-98 363.2 417 51.6
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 3.9e-98 362.8 410 53.9
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 5.1e-98 362.5 411 52.1
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 5.1e-98 362.5 411 52.1
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 5.1e-98 362.5 404 53.2
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 6.6e-98 362.1 399 54.6
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 6.6e-98 362.1 427 53.6
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.1e-97 361.3 399 54.4
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.5e-97 360.9 399 54.6
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 1.5e-97 360.9 416 53.6
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.9e-97 360.5 399 54.4
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.9e-97 360.5 388 54.6
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 2.5e-97 360.1 410 53.7
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 3.3e-97 359.8 390 54.6
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 3.3e-97 359.8 413 52.5
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 5.6e-97 359.0 415 52.3
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 9.6e-97 358.2 427 52.5
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 1.2e-96 357.8 406 52.2
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 1.2e-96 357.8 399 52.6
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 1.6e-96 357.5 425 52.0
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 1.6e-96 357.5 425 52.0
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 1.6e-96 357.5 429 52.4
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 1.6e-96 357.5 418 52.2
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 2.1e-96 357.1 410 52.4
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 2.1e-96 357.1 419 51.3
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 2.1e-96 357.1 424 52.1
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 2.8e-96 356.7 407 52.6
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 3.6e-96 356.3 409 52.3
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 3.6e-96 356.3 407 52.3
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 3.6e-96 356.3 395 52.9
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 4.7e-96 355.9 408 53.2
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 6.2e-96 355.5 426 52.1
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 6.2e-96 355.5 426 52.1
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 8.1e-96 355.1 417 52.3
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 1.4e-95 354.4 408 51.0
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 3.1e-95 353.2 426 51.9
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 5.2e-95 352.4 412 51.9
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 9.0e-95 351.7 413 52.3
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 1.2e-94 351.3 416 52.2
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 1.2e-94 351.3 416 51.9
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 1.5e-94 350.9 393 52.9
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 1.5e-94 350.9 410 51.7
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 1.5e-94 350.9 396 53.3
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 2.0e-94 350.5 412 50.7
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 3.4e-94 349.7 395 52.4
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 3.4e-94 349.7 419 51.6
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 9.9e-94 348.2 415 52.0
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 9.9e-94 348.2 415 52.0
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 9.9e-94 348.2 418 51.4
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 9.9e-94 348.2 416 51.9
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 1.3e-93 347.8 420 51.2
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 2.9e-93 346.7 396 52.8
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 1.4e-92 344.4 396 52.5
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 2.4e-92 343.6 416 51.2
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 5.4e-92 342.4 419 50.1
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 5.4e-92 342.4 419 50.1
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 7.1e-92 342.0 396 52.3
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 1.6e-91 340.9 473 47.6
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 2.7e-91 340.1 412 48.8
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 4.6e-91 339.3 423 50.6
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 6.6e-90 335.5 421 49.2
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 6.6e-90 335.5 416 49.3
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 4.3e-89 332.8 436 47.9
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 5.6e-89 332.4 412 49.5
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 2.1e-88 330.5 447 47.4
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 3.4e-86 323.2 405 48.4
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 1.3e-85 321.2 405 48.1
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.0e-82 311.6 394 47.5
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 3.3e-81 306.6 415 45.1
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 4.8e-80 302.8 367 50.1
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 1.5e-78 297.7 402 45.8
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 3.4e-78 296.6 396 47.0
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.8e-72 276.9 390 44.4
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 1.4e-71 274.6 387 44.2
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 2.0e-70 270.8 396 42.9
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 4.9e-69 266.2 382 44.2
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 2.5e-68 263.8 411 41.4
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 2.5e-68 263.8 290 56.2
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 4.2e-68 263.1 291 57.0
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 6.7e-66 255.8 379 43.3
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.5e-65 254.6 336 46.4
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 1.3e-64 251.5 407 39.8
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 3.1e-63 246.9 296 53.4
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 2.0e-62 244.2 427 40.3
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 1.6e-59 234.6 297 48.8
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 1.8e-58 231.1 386 39.9
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 5.1e-58 229.6 391 38.6
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.1e-57 228.4 334 42.8
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 1.5e-57 228.0 431 39.0
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 1.1e-55 221.9 430 38.6
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 2.6e-46 190.7 175 61.1
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 1.2e-43 181.8 182 54.4
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 1.5e-41 174.9 178 54.5
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 1.7e-40 171.4 185 54.6
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 2.8e-40 170.6 530 28.7
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 3.7e-40 170.2 178 53.9
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 4.8e-40 169.9 178 53.9
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 1.6e-35 154.8 124 65.3
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 1.6e-30 138.3 479 26.9
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 5.5e-28 129.8 381 30.4
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 7.2e-28 129.4 141 51.8
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 1.2e-27 128.6 99 65.7
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 1.4e-26 125.2 81 72.8
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 1.4e-26 125.2 81 72.8
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 1.4e-26 125.2 81 72.8
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.2e-25 122.1 390 28.5
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 9.8e-25 119.0 87 67.8
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 1.6e-19 101.7 128 50.0
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 2.1e-19 101.3 192 37.5
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 8.0e-19 99.4 54 87.0
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 3.4e-17 94.0 168 41.1
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 1.1e-15 89.0 65 67.7
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 3.5e-14 84.0 83 59.0
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 1.2e-11 75.5 93 46.2
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 8.0e-11 72.8 99 42.4
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 8.9e-10 69.3 130 40.8
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 5.4e-07 60.1 44 70.5


User provided reference genes

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