Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 3.2e-114 415.2 227 100.0
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 7.6e-84 314.3 231 78.8
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 4.2e-82 308.5 231 78.4
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 3.5e-81 305.4 231 78.8
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 4.9e-75 285.0 229 72.5
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.1e-74 283.9 230 74.3
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 3.2e-74 282.3 235 69.4
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 7.1e-74 281.2 235 71.5
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.6e-73 280.0 233 72.5
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 2.7e-73 279.3 229 69.0
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 4.6e-73 278.5 195 82.6
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 6.0e-73 278.1 229 69.0
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.3e-72 276.9 237 70.9
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.8e-72 276.6 235 71.9
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 2.3e-72 276.2 228 70.6
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 3.9e-72 275.4 227 71.4
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.1e-72 275.0 234 70.5
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 6.7e-72 274.6 236 65.7
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 6.7e-72 274.6 240 68.3
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.7e-72 274.6 233 70.4
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 8.7e-72 274.2 183 85.8
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.5e-71 273.5 238 68.1
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.3e-71 272.3 238 67.2
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 3.3e-71 272.3 222 72.1
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.3e-71 272.3 233 68.7
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 4.3e-71 271.9 239 65.7
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 5.7e-71 271.6 233 69.1
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.3e-70 270.4 241 65.6
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.6e-70 270.0 238 66.8
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.6e-70 270.0 230 71.7
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.8e-70 269.2 241 67.2
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 3.7e-70 268.9 241 68.9
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 6.2e-70 268.1 232 69.4
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 8.2e-70 267.7 194 78.4
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 8.2e-70 267.7 236 66.5
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.4e-69 266.9 269 61.7
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.8e-69 266.5 240 68.3
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 2.4e-69 266.2 255 66.3
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.4e-69 266.2 225 68.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 5.3e-69 265.0 222 70.7
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 6.9e-69 264.6 222 70.3
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 6.9e-69 264.6 236 68.2
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.2e-68 263.8 186 79.6
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.2e-68 263.8 225 69.8
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.2e-68 263.8 229 67.2
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.6e-68 262.7 187 79.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.6e-68 262.7 232 70.7
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.6e-68 262.7 244 63.9
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 3.4e-68 262.3 239 62.3
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.0e-67 260.8 241 66.4
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.3e-67 260.4 234 68.4
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.2e-67 259.6 176 84.1
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 2.2e-67 259.6 180 81.7
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.8e-67 258.8 232 67.2
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.8e-67 258.8 232 67.2
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 5.0e-67 258.5 238 63.4
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 6.5e-67 258.1 219 66.2
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.4e-66 256.9 219 65.3
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 3.2e-66 255.8 229 64.6
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 3.2e-66 255.8 236 61.9
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 5.5e-66 255.0 230 67.0
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 5.5e-66 255.0 183 76.5
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.2e-65 253.8 270 57.8
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.5e-65 252.3 223 68.2
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.5e-65 252.3 185 79.5
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 3.5e-65 252.3 168 84.5
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.0e-64 249.2 199 73.4
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 6.7e-64 248.1 185 78.4
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.5e-63 246.9 238 62.6
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 2.5e-63 246.1 234 62.4
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 2.5e-63 246.1 234 62.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 7.4e-63 244.6 238 62.2
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 7.4e-63 244.6 235 61.7
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.3e-62 243.8 236 63.6
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.3e-62 243.8 180 73.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.6e-62 243.4 238 62.2
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.6e-62 243.4 219 63.5
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.6e-62 243.4 233 63.1
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.6e-62 243.4 225 67.1
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.6e-62 243.4 225 67.1
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.2e-62 243.0 236 63.6
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.7e-62 242.3 188 70.2
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 4.8e-62 241.9 236 66.5
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 4.8e-62 241.9 238 61.8
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 4.8e-62 241.9 183 70.5
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 8.2e-62 241.1 235 61.3
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.1e-61 240.7 225 60.9
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 3.1e-61 239.2 238 61.8
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 6.9e-61 238.0 249 62.2
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.2e-60 237.3 240 61.2
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 4.5e-60 235.3 239 61.9
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 5.9e-60 235.0 239 61.5
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 2.2e-59 233.0 178 77.0
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 5.0e-59 231.9 230 60.0
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.1e-58 230.7 250 56.4
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.1e-57 226.5 243 58.4
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.0e-56 222.6 252 53.6
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.2e-54 216.5 181 73.5
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.2e-54 216.5 205 62.9
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 2.8e-54 216.1 183 67.8
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 4.8e-54 215.3 182 67.6
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.8e-53 213.4 214 59.3
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 6.5e-51 204.9 213 57.3
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 4.2e-50 202.2 188 62.2
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.1e-49 199.9 233 57.1
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 7.9e-49 198.0 152 71.1
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 3.9e-48 195.7 190 57.4
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.5e-47 193.7 181 59.1
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.8e-43 179.1 130 82.3
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.6e-41 173.7 326 44.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 9.7e-39 164.5 212 50.0
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 9.1e-37 157.9 204 52.5
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 4.5e-36 155.6 174 54.0
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 9.4e-34 147.9 99 77.8
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.6e-33 146.0 99 76.8
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.4e-32 144.1 99 75.8
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.2e-31 141.0 94 75.5
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.2e-28 131.0 122 59.8
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.3e-27 127.5 73 82.2
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 5.0e-27 125.6 99 61.6
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 9.4e-26 121.3 161 44.7
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 2.7e-25 119.8 94 79.8
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.0e-23 113.6 241 38.6
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 3.4e-23 112.8 79 68.4
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.3e-22 110.9 147 46.3
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.3e-22 110.9 153 46.4
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.7e-22 110.5 193 39.9
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.1e-21 107.8 213 40.8
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 3.1e-21 106.3 219 36.5
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 2.0e-20 103.6 202 39.1
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 3.5e-20 102.8 202 38.6
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 7.7e-20 101.7 162 41.4
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.9e-18 97.1 82 65.9
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 4.4e-15 85.9 136 36.8
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 5.9e-12 75.5 133 37.6
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.2e-09 67.8 115 40.9
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 2.8e-09 66.6 51 66.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.4e-08 64.3 240 31.2
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 3.1e-08 63.2 53 84.9
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 6.8e-08 62.0 92 44.6
TAR636G0451 Trochodendron aralioides HOM05D005346 ORTHO05D007051 6.8e-08 62.0 88 46.6
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 4.9e-06 55.8 138 34.8


User provided reference genes

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