Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g12388_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 1.9e-95 352.8 220 100.0
MBI02_g25405_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 1.5e-52 210.3 145 77.9
TAR636G3310 Trochodendron aralioides HOM05D002174 ORTHO05D005447 2.0e-17 93.6 90 55.6
Duzib151G0365 Durio zibethinus HOM05D002174 ORTHO05D005447 3.5e-17 92.8 89 56.2
arahy.Tifrunner.gnm1.ann1.LMI6R7 Arachis hypogaea HOM05D002174 ORTHO05D005447 4.6e-17 92.4 89 53.9
arahy.Tifrunner.gnm1.ann1.UNW18Y Arachis hypogaea HOM05D002174 ORTHO05D005447 5.9e-17 92.0 89 53.9
Gohir.A09G235200 Gossypium hirsutum HOM05D002174 ORTHO05D005447 5.9e-17 92.0 89 57.3
Gohir.D09G236000 Gossypium hirsutum HOM05D002174 ORTHO05D005447 5.9e-17 92.0 89 57.3
Gorai.006G259100 Gossypium raimondii HOM05D002174 ORTHO05D005447 5.9e-17 92.0 89 57.3
TWI09G1315 Tripterygium wilfordii HOM05D002174 ORTHO05D005447 5.9e-17 92.0 89 56.2
Psat3g002000 Pisum sativum HOM05D002174 ORTHO05D005447 1.3e-16 90.9 89 53.9
SalBow5G1439 Salvia bowleyana HOM05D002174 ORTHO05D005447 1.3e-16 90.9 89 52.8
VMungo1309G3089 Vigna mungo HOM05D002174 ORTHO05D005447 1.3e-16 90.9 89 52.8
CiPaw.01G139900 Carya illinoinensis HOM05D002174 ORTHO05D005447 1.7e-16 90.5 112 45.5
Ca_21451_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 2.3e-16 90.1 89 53.9
Medtr2g034550 Medicago truncatula HOM05D002174 ORTHO05D005447 2.3e-16 90.1 89 52.8
arahy.Tifrunner.gnm1.ann1.XZ5MVW Arachis hypogaea HOM05D002174 ORTHO05D005447 3.0e-16 89.7 89 52.8
Nn3g21677 Nelumbo nucifera HOM05D002174 ORTHO05D005447 3.0e-16 89.7 89 53.9
CSS0048523 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005447 3.9e-16 89.4 89 52.8
CsaV3_6G022380 Cucumis sativus L. HOM05D002174 ORTHO05D005447 3.9e-16 89.4 89 49.4
Lsat_1_v5_gn_6_18361 Lactuca sativa HOM05D002174 ORTHO05D005447 3.9e-16 89.4 89 51.7
Psat0s2066g0040 Pisum sativum HOM05D002174 ORTHO05D005447 3.9e-16 89.4 89 52.8
Thecc.04G297400 Theobroma cacao HOM05D002174 ORTHO05D005447 3.9e-16 89.4 120 45.0
Lj4g0009380 Lotus japonicus HOM05D002174 ORTHO05D005447 5.0e-16 89.0 89 52.8
Oeu033900.1 Olea europaea HOM05D002174 ORTHO05D005447 5.0e-16 89.0 139 40.3
MD16G1157300 Malus domestica HOM05D002174 ORTHO05D005447 6.6e-16 88.6 89 52.8
Oeu016484.2 Olea europaea HOM05D002174 ORTHO05D005447 6.6e-16 88.6 107 46.7
Actinidia40361 Actinidia chinensis HOM05D002174 ORTHO05D005447 8.6e-16 88.2 123 43.1
ATR0707G001 Amborella trichopoda HOM05D002174 ORTHO05D005447 8.6e-16 88.2 89 52.8
Ca_01872_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 8.6e-16 88.2 89 51.7
Ciclev10006030m.g Citrus clementina HOM05D002174 ORTHO05D005447 8.6e-16 88.2 114 43.9
Lalb_Chr07g0182101 Lupinus albus HOM05D002174 ORTHO05D005447 8.6e-16 88.2 89 52.8
Solyc01g060070.3 Solanum lycopersicum HOM05D002174 ORTHO05D005447 8.6e-16 88.2 134 41.0
Sopen01g026250 Solanum pennellii HOM05D002174 ORTHO05D005447 8.6e-16 88.2 134 41.0
Cfa015340 Carpinus fangiana HOM05D002174 ORTHO05D005447 1.1e-15 87.8 112 44.6
Haze_01275 Corylus avellana HOM05D002174 ORTHO05D005447 1.1e-15 87.8 112 44.6
Eucgr.A00350 Eucalyptus grandis HOM05D002174 ORTHO05D005447 1.1e-15 87.8 107 44.9
Gohir.D10G178300 Gossypium hirsutum HOM05D002174 ORTHO05D005447 1.1e-15 87.8 87 51.7
Gorai.011G199300 Gossypium raimondii HOM05D002174 ORTHO05D005447 1.1e-15 87.8 87 51.7
HPP92_001059 Vanilla planifolia HOM05D002174 ORTHO05D005447 1.1e-15 87.8 103 47.6
HPP92_001148 Vanilla planifolia HOM05D002174 ORTHO05D005447 1.1e-15 87.8 103 47.6
DCAR_027009 Daucus carota HOM05D002174 ORTHO05D005447 1.5e-15 87.4 89 51.7
HanXRQChr05g0145771 Helianthus annuus HOM05D002174 ORTHO05D005447 1.5e-15 87.4 89 49.4
Nitab4.5_0003294g0030 Nicotiana tabacum HOM05D002174 ORTHO05D005447 1.5e-15 87.4 120 43.3
PGSC0003DMG400026692 Solanum tuberosum HOM05D002174 ORTHO05D005447 1.5e-15 87.4 134 41.0
TAR365G0957 Trochodendron aralioides HOM05D002174 ORTHO05D005447 1.5e-15 87.4 89 51.7
vmacro15190 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 1.5e-15 87.4 122 40.2
Actinidia14262 Actinidia chinensis HOM05D002174 ORTHO05D005447 1.9e-15 87.0 89 51.7
ClCG06G004650 Citrullus lanatus HOM05D002174 ORTHO05D005447 1.9e-15 87.0 90 50.0
Migut.N00049 Erythranthe guttata HOM05D002174 ORTHO05D005447 1.9e-15 87.0 107 45.8
Lj3C829T9 Lonicera japonica HOM05D002174 ORTHO05D005447 1.9e-15 87.0 89 51.7
Lj6g0023775 Lotus japonicus HOM05D002174 ORTHO05D005447 1.9e-15 87.0 89 50.6
Lalb_Chr13g0298411 Lupinus albus HOM05D002174 ORTHO05D005447 1.9e-15 87.0 89 51.7
Nitab4.5_0001414g0010 Nicotiana tabacum HOM05D002174 ORTHO05D005447 1.9e-15 87.0 107 45.8
PSO210G4136 Papaver somniferum HOM05D002174 ORTHO05D005447 1.9e-15 87.0 89 50.6
PSO761G0631 Papaver somniferum HOM05D002174 ORTHO05D005447 1.9e-15 87.0 89 50.6
Rhsim02G0005200 Rhododendron simsii HOM05D002174 ORTHO05D005447 1.9e-15 87.0 89 51.7
Cpa.g.sc9.88 Carica papaya HOM05D002174 ORTHO05D005447 2.5e-15 86.7 89 51.7
Glyma.09G037800 Glycine max HOM05D002174 ORTHO05D005447 2.5e-15 86.7 89 50.6
Glyma.15G142900 Glycine max HOM05D002174 ORTHO05D005447 2.5e-15 86.7 120 40.0
Manes.15G005500 Manihot esculenta HOM05D002174 ORTHO05D005447 2.5e-15 86.7 110 45.5
Phvul.009G255100 Phaseolus vulgaris HOM05D002174 ORTHO05D005447 2.5e-15 86.7 89 50.6
PGR031G3841 Punica granatum HOM05D002174 ORTHO05D005447 2.5e-15 86.7 114 43.0
GSVIVG01035019001 Vitis vinifera HOM05D002174 ORTHO05D005447 2.5e-15 86.7 89 51.7
CAN.G197.4 Capsicum annuum HOM05D002174 ORTHO05D005447 3.3e-15 86.3 112 43.8
Rhsim04G0234100 Rhododendron simsii HOM05D002174 ORTHO05D005447 3.3e-15 86.3 89 51.7
Sed0011045 Sechium edule HOM05D002174 ORTHO05D005447 3.3e-15 86.3 89 49.4
unitig_32.g10635 Utricularia gibba HOM05D002174 ORTHO05D005447 3.3e-15 86.3 89 51.7
MSTRG.3864 Avicennia marina HOM05D002174 ORTHO05D005447 4.3e-15 85.9 89 51.7
Glyma.07G241400 Glycine max HOM05D002174 ORTHO05D005447 4.3e-15 85.9 89 50.6
HanXRQChr13g0395301 Helianthus annuus HOM05D002174 ORTHO05D005447 4.3e-15 85.9 107 44.9
Lalb_Chr06g0165391 Lupinus albus HOM05D002174 ORTHO05D005447 4.3e-15 85.9 89 51.7
RcHm_v2.0_Chr4g0424511 Rosa chinensis HOM05D002174 ORTHO05D005447 4.3e-15 85.9 89 50.6
vmacro08063 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 4.3e-15 85.9 89 51.7
Actinidia15593 Actinidia chinensis HOM05D002174 ORTHO05D005447 5.6e-15 85.5 89 50.6
MD13G1156400 Malus domestica HOM05D002174 ORTHO05D005447 5.6e-15 85.5 89 51.7
Prupe.1G122200 Prunus persica HOM05D002174 ORTHO05D005447 5.6e-15 85.5 89 51.7
Lsat_1_v5_gn_6_114360 Lactuca sativa HOM05D002174 ORTHO05D005447 7.3e-15 85.1 120 42.5
Peaxi162Scf00065g00015 Petunia axillaris HOM05D002174 ORTHO05D005447 9.5e-15 84.7 120 41.7
Potri.010G142300 Populus trichocarpa HOM05D002174 ORTHO05D005447 9.5e-15 84.7 89 49.4
QL06p011615 Quercus lobata HOM05D002174 ORTHO05D005447 9.5e-15 84.7 89 50.6
Atru.chr4.2988 Acer truncatum HOM05D002174 ORTHO05D005447 1.2e-14 84.3 114 42.1
Aqoxy2G02777 Aquilegia oxysepala HOM05D002174 ORTHO05D005447 1.2e-14 84.3 131 38.2
THA.LOC104820299 Tarenaya hassleriana HOM05D002174 ORTHO05D005447 1.2e-14 84.3 89 50.6
FAN07G2201 Fragaria x ananassa HOM05D002174 ORTHO05D005447 1.6e-14 84.0 89 50.6
Os03g0305600 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 1.6e-14 84.0 89 52.8
ECA246G2588 Erigeron canadensis HOM05D002174 ORTHO05D005447 2.1e-14 83.6 89 47.2
TPR.G16828 Trifolium pratense HOM05D002174 ORTHO05D005447 2.1e-14 83.6 88 50.0
FvH4_4g19460 Fragaria vesca HOM05D002174 ORTHO05D005447 2.8e-14 83.2 89 49.4
FAN12G1286 Fragaria x ananassa HOM05D002174 ORTHO05D005447 2.8e-14 83.2 89 49.4
Cc03_g01000 Coffea canephora HOM05D002174 ORTHO05D005447 3.6e-14 82.8 89 49.4
Dinv44304 Davidia involucrata HOM05D002174 ORTHO05D005447 3.6e-14 82.8 89 48.3
Gohir.A10G171200 Gossypium hirsutum HOM05D002174 ORTHO05D005447 3.6e-14 82.8 87 49.4
ECA233G3490 Erigeron canadensis HOM05D002174 ORTHO05D005447 4.7e-14 82.4 88 48.9
MBI18_g31671_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 4.7e-14 82.4 60 70.0
Medtr4g121900 Medicago truncatula HOM05D002174 ORTHO05D005447 4.7e-14 82.4 89 49.4
Potri.008G107200 Populus trichocarpa HOM05D002174 ORTHO05D005447 4.7e-14 82.4 89 49.4
Sabra08G0081100 Salix brachista HOM05D002174 ORTHO05D005447 4.7e-14 82.4 88 50.0
Sc25g0003390 Simmondsia chinensis HOM05D002174 ORTHO05D005447 6.2e-14 82.0 107 43.0
Lj6A689T51 Lonicera japonica HOM05D002174 ORTHO05D005447 1.0e-13 81.3 116 40.5
MBI04_g37587_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 1.0e-13 81.3 64 68.8
EL10Ac3g05462 Beta vulgaris HOM05D002174 ORTHO05D005447 1.4e-13 80.9 89 48.3
CDE01G0513 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 1.4e-13 80.9 88 50.0
Os01g0303300 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 1.4e-13 80.9 89 46.1
Migut.G00088 Erythranthe guttata HOM05D002174 ORTHO05D005447 1.8e-13 80.5 107 42.1
Sabra10G0110000 Salix brachista HOM05D002174 ORTHO05D005447 1.8e-13 80.5 89 46.1
THA.LOC104802605 Tarenaya hassleriana HOM05D002174 ORTHO05D005447 3.1e-13 79.7 90 50.0
SalBow8G1198 Salvia bowleyana HOM05D002174 ORTHO05D005447 4.0e-13 79.3 89 47.2
SalBow8G1617 Salvia bowleyana HOM05D002174 ORTHO05D005447 4.0e-13 79.3 89 47.2
Zm00001eb014550 Zea mays HOM05D002174 ORTHO05D005447 6.8e-13 78.6 89 48.3
AUR62041404 Chenopodium quinoa HOM05D002174 ORTHO05D005447 2.6e-12 76.6 133 36.8
Aa31LG10G5960 Aethionema arabicum HOM05D002174 ORTHO05D005447 3.4e-12 76.3 89 48.3
SEGI_36733 Sequoiadendron giganteum HOM05D002174 ORTHO05D005447 3.4e-12 76.3 88 46.6
COL.COLO4_34650 Corchorus olitorius HOM05D002174 ORTHO05D005447 4.4e-12 75.9 90 48.9
Carub.0007s2539 Capsella rubella HOM05D002174 ORTHO05D005447 5.8e-12 75.5 90 50.0
AUR62016131 Chenopodium quinoa HOM05D002174 ORTHO05D005447 5.8e-12 75.5 89 44.9
BcaB04g18368 Brassica carinata HOM05D002174 ORTHO05D005447 9.8e-12 74.7 90 50.0
BcaC09g50313 Brassica carinata HOM05D002174 ORTHO05D005447 9.8e-12 74.7 90 50.0
A01p21400 Brassica napus HOM05D002174 ORTHO05D005447 9.8e-12 74.7 90 50.0
C01p26740 Brassica napus HOM05D002174 ORTHO05D005447 9.8e-12 74.7 90 50.0
BolC1t02615H Brassica oleracea HOM05D002174 ORTHO05D005447 9.8e-12 74.7 90 50.0
BraA01t02045Z Brassica rapa HOM05D002174 ORTHO05D005447 9.8e-12 74.7 90 50.0
Sp7g14670 Schrenkiella parvula HOM05D002174 ORTHO05D005447 9.8e-12 74.7 90 48.9
A08p12370 Brassica napus HOM05D002174 ORTHO05D005447 1.7e-11 73.9 90 48.9
BraA08t33218Z Brassica rapa HOM05D002174 ORTHO05D005447 1.7e-11 73.9 90 48.9
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 1.7e-11 73.9 77 49.4
CARHR222530 Cardamine hirsuta HOM05D002174 ORTHO05D005447 2.2e-11 73.6 90 48.9
AL7G38950 Arabidopsis lyrata HOM05D002174 ORTHO05D005447 2.9e-11 73.2 90 48.9
BolC8t48340H Brassica oleracea HOM05D002174 ORTHO05D005447 2.9e-11 73.2 90 50.0
Thhalv10026380m.g Eutrema salsugineum HOM05D002174 ORTHO05D005447 3.7e-11 72.8 90 47.8
AT4G16160 Arabidopsis thaliana HOM05D002174 ORTHO05D005447 4.9e-11 72.4 90 48.9
MBI15_g25005_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 6.4e-11 72.0 45 84.4
CSS0046628 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005447 9.2e-10 68.2 81 45.7
Zm00001eb130200 Zea mays HOM05D002174 ORTHO05D005447 9.2e-10 68.2 90 42.2
AagrBONN_evm.TU.Sc2ySwM_117.346 Anthoceros agrestis HOM05D001717 ORTHO05D007217 1.2e-09 67.8 92 40.2
SMO147G0258 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 1.2e-09 67.8 87 39.1
BcaC07g37960 Brassica carinata HOM05D002174 ORTHO05D005447 2.7e-09 66.6 90 46.7
Mapoly0133s0032 Marchantia polymorpha HOM05D002174 ORTHO05D005941 2.7e-09 66.6 87 40.2
SMO358G0445 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 3.5e-09 66.2 87 41.4
Mapoly0097s0034 Marchantia polymorpha HOM05D002174 ORTHO05D005941 4.6e-09 65.9 87 40.2
A03p49630 Brassica napus HOM05D002174 ORTHO05D005447 6.0e-09 65.5 90 46.7
BraA03t14062Z Brassica rapa HOM05D002174 ORTHO05D005447 6.0e-09 65.5 90 46.7
CDE12G0150 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 7.8e-09 65.1 102 41.2
Pp3c12_16880 Physcomitrium patens HOM05D002174 ORTHO05D005941 7.8e-09 65.1 87 40.2
Pp3c3_28050 Physcomitrium patens HOM05D002174 ORTHO05D005941 1.0e-08 64.7 87 39.1
BcaC06g33460 Brassica carinata HOM05D002174 ORTHO05D005447 1.7e-08 63.9 90 45.6
C07p47700 Brassica napus HOM05D002174 ORTHO05D005447 1.7e-08 63.9 90 45.6
BolC7t45295H Brassica oleracea HOM05D002174 ORTHO05D005447 1.7e-08 63.9 90 45.6
BcaC06g32992 Brassica carinata HOM05D002174 ORTHO05D005447 3.0e-08 63.2 90 45.6
MBI19_g13909_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D010670 3.0e-08 63.2 34 91.2
MBI16_g22307_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D000245 8.6e-08 61.6 34 85.3
MBI06_g00793_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D000245 4.3e-07 59.3 37 75.7
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 5.6e-07 58.9 87 40.2
MBI12_g26533_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D000245 1.6e-06 57.4 34 82.4
Cc03_g00990 Coffea canephora HOM05D002174 ORTHO05D005447 2.1e-06 57.0 47 59.6


User provided reference genes

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