Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 2.1e-82 308.9 147 100.0
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 4.8e-55 218.0 109 95.4
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 1.0e-49 200.3 209 51.7
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 1.5e-45 186.4 142 59.2
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 1.5e-45 186.4 144 62.5
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 2.6e-45 185.7 142 59.2
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 1.3e-44 183.3 144 59.7
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 3.8e-44 181.8 144 59.0
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 3.8e-44 181.8 141 60.3
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 3.8e-44 181.8 144 58.3
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 1.9e-43 179.5 143 55.9
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 3.2e-43 178.7 140 56.4
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 7.2e-43 177.6 144 56.9
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 9.4e-43 177.2 142 59.9
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 4.7e-42 174.9 138 56.5
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 1.8e-41 172.9 146 56.2
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 1.8e-41 172.9 138 60.9
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 1.8e-41 172.9 138 55.8
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 3.0e-41 172.2 138 56.5
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 3.9e-41 171.8 138 58.7
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 5.2e-41 171.4 167 55.1
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 5.2e-41 171.4 140 59.3
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 5.2e-41 171.4 140 60.7
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 6.7e-41 171.0 138 55.8
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 6.7e-41 171.0 138 55.8
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 8.8e-41 170.6 140 52.9
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 8.8e-41 170.6 138 56.5
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 8.8e-41 170.6 142 52.1
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 2.0e-40 169.5 136 52.9
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 3.3e-40 168.7 141 56.0
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 4.4e-40 168.3 138 55.1
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 5.7e-40 167.9 136 55.9
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 5.7e-40 167.9 144 52.8
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 9.7e-40 167.2 138 55.1
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 1.3e-39 166.8 145 53.8
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 1.7e-39 166.4 140 55.7
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.2e-39 166.0 136 60.3
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 2.2e-39 166.0 143 52.4
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 2.8e-39 165.6 145 53.1
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 2.8e-39 165.6 138 58.0
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 3.7e-39 165.2 138 55.1
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 6.3e-39 164.5 145 53.1
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 6.3e-39 164.5 140 53.6
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 1.1e-38 163.7 140 53.6
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 1.4e-38 163.3 140 53.6
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 1.4e-38 163.3 138 54.3
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 2.4e-38 162.5 140 52.1
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 3.1e-38 162.2 135 52.6
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 3.1e-38 162.2 143 51.0
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 4.1e-38 161.8 136 53.7
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 5.3e-38 161.4 135 53.3
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 5.3e-38 161.4 133 54.9
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 5.3e-38 161.4 138 52.9
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 7.0e-38 161.0 141 52.5
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 9.1e-38 160.6 140 52.1
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 9.1e-38 160.6 141 55.3
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 1.2e-37 160.2 140 52.1
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 1.6e-37 159.8 140 52.1
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 2.6e-37 159.1 140 52.1
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 2.6e-37 159.1 138 55.1
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 4.5e-37 158.3 135 52.6
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 4.5e-37 158.3 135 51.9
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 4.5e-37 158.3 145 51.7
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 5.9e-37 157.9 140 51.4
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 7.7e-37 157.5 135 52.6
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 1.0e-36 157.1 135 53.3
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 1.0e-36 157.1 135 53.3
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 1.3e-36 156.8 135 53.3
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 1.3e-36 156.8 135 53.3
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 1.3e-36 156.8 135 53.3
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 2.2e-36 156.0 143 53.8
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 3.8e-36 155.2 135 52.6
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 3.8e-36 155.2 135 51.9
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 5.0e-36 154.8 166 47.6
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 1.1e-35 153.7 133 57.1
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 1.9e-35 152.9 128 55.5
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 2.5e-35 152.5 144 50.0
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 3.2e-35 152.1 137 54.0
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 5.5e-35 151.4 140 50.7
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 9.4e-35 150.6 160 50.0
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 1.2e-34 150.2 125 55.2
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 1.6e-34 149.8 135 51.1
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 4.7e-34 148.3 142 52.8
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 6.1e-34 147.9 140 52.1
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 1.4e-33 146.7 141 52.5
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 1.4e-33 146.7 131 51.9
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 4.0e-33 145.2 142 49.3
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 6.7e-33 144.4 141 47.5
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 1.5e-32 143.3 140 48.6
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 2.0e-32 142.9 132 52.3
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 2.6e-32 142.5 132 50.8
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 3.3e-32 142.1 138 50.0
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-30 136.3 141 45.4
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 4.1e-30 135.2 114 56.1
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 4.1e-30 135.2 138 46.4
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 3.8e-28 128.6 123 52.0
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 3.8e-28 128.6 118 52.5
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 5.0e-28 128.3 156 43.6
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 3.2e-27 125.6 157 43.9
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 4.2e-27 125.2 107 55.1
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 1.2e-26 123.6 137 43.1
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 2.1e-26 122.9 107 55.1
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 3.6e-26 122.1 133 47.4
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 1.4e-25 120.2 140 44.3
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 3.0e-25 119.0 137 41.6
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 4.0e-25 118.6 105 51.4
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.0e-25 118.6 115 50.4
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 8.8e-25 117.5 140 43.6
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 4.8e-23 111.7 123 44.7
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 6.3e-23 111.3 92 58.7
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 2.3e-20 102.8 103 48.5
Potri.008G153602 Populus trichocarpa HOM05D006838 ORTHO05D008915 6.6e-20 101.3 87 52.9
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.3e-19 99.0 75 61.3
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 7.5e-16 87.8 111 40.5
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 2.8e-15 85.9 100 46.0
Sabra10G0056600 Salix brachista HOM05D006838 ORTHO05D008915 8.6e-12 74.3 138 33.3
CsaV3_7G030670 Cucumis sativus L. HOM05D000986 ORTHO05D000794 2.8e-10 69.3 136 32.4
MELO3C023589.2 Cucumis melo HOM05D000986 ORTHO05D000794 4.7e-10 68.6 136 32.4
Lsat_1_v5_gn_7_75940 Lactuca sativa HOM05D000986 ORTHO05D000794 1.8e-09 66.6 133 29.3
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 2.3e-09 66.2 54 53.7
VMungo1127G0751 Vigna mungo HOM05D000986 ORTHO05D000794 3.1e-09 65.9 135 31.9
CARHR121370 Cardamine hirsuta HOM05D000986 ORTHO05D000794 5.2e-09 65.1 134 32.1
AT2G28420 Arabidopsis thaliana HOM05D000986 ORTHO05D000794 1.2e-08 63.9 134 31.3
arahy.Tifrunner.gnm1.ann1.9T2EYF Arachis hypogaea HOM05D000986 ORTHO05D000794 1.2e-08 63.9 135 30.4
arahy.Tifrunner.gnm1.ann1.KSBN30 Arachis hypogaea HOM05D000986 ORTHO05D000794 1.2e-08 63.9 135 30.4
Ca_26318_v3 Cicer arietinum L. HOM05D000986 ORTHO05D000794 1.2e-08 63.9 135 31.9
Lsat_1_v5_gn_7_76640 Lactuca sativa HOM05D000986 ORTHO05D000794 1.2e-08 63.9 133 30.1
Sed0020072 Sechium edule HOM05D000986 ORTHO05D000794 1.2e-08 63.9 137 30.7
Solyc01g103630.4 Solanum lycopersicum HOM05D000986 ORTHO05D000794 1.2e-08 63.9 133 27.8
Cfa010824 Carpinus fangiana HOM05D000986 ORTHO05D000794 1.5e-08 63.5 135 31.9
TWI09G1595 Tripterygium wilfordii HOM05D000986 ORTHO05D000794 1.5e-08 63.5 135 31.9
BcaNung07073 Brassica carinata HOM05D000986 ORTHO05D000794 2.0e-08 63.2 134 30.6
A07p18990 Brassica napus HOM05D000986 ORTHO05D000794 2.0e-08 63.2 134 30.6
BraA07t29604Z Brassica rapa HOM05D000986 ORTHO05D000794 2.0e-08 63.2 134 30.6
Carub.0004s0937 Capsella rubella HOM05D000986 ORTHO05D000794 2.0e-08 63.2 134 30.6
Nitab4.5_0006695g0050 Nicotiana tabacum HOM05D000986 ORTHO05D000794 2.0e-08 63.2 134 29.1
AL4G21600 Arabidopsis lyrata HOM05D000986 ORTHO05D000794 2.6e-08 62.8 134 31.3
Duzib132G0099 Durio zibethinus HOM05D000986 ORTHO05D000794 2.6e-08 62.8 133 29.3
Lj3g0002168 Lotus japonicus HOM05D000986 ORTHO05D000794 2.6e-08 62.8 135 30.4
Sp4g11240 Schrenkiella parvula HOM05D000986 ORTHO05D000794 2.6e-08 62.8 134 29.9
C04p22960 Brassica napus HOM05D000986 ORTHO05D000794 3.4e-08 62.4 134 31.3
BolC4t23790H Brassica oleracea HOM05D000986 ORTHO05D000794 3.4e-08 62.4 134 31.3
Gohir.A12G100300 Gossypium hirsutum HOM05D000986 ORTHO05D000794 3.4e-08 62.4 134 31.3
Sopen01g046040 Solanum pennellii HOM05D000986 ORTHO05D000794 3.4e-08 62.4 133 27.1
CiPaw.14G003900 Carya illinoinensis HOM05D000986 ORTHO05D000794 4.4e-08 62.0 136 29.4
Aa31LG8G5270 Aethionema arabicum HOM05D000986 ORTHO05D000794 9.8e-08 60.8 134 32.1
COL.COLO4_12329 Corchorus olitorius HOM05D000986 ORTHO05D000794 9.8e-08 60.8 134 29.9
QL02p100270 Quercus lobata HOM05D000986 ORTHO05D000794 9.8e-08 60.8 133 28.6
Migut.K00971 Erythranthe guttata HOM05D006838 ORTHO05D008915 1.3e-07 60.5 55 50.9
Gohir.D12G103300 Gossypium hirsutum HOM05D000986 ORTHO05D000794 1.3e-07 60.5 135 29.6
Gorai.008G112300 Gossypium raimondii HOM05D000986 ORTHO05D000794 1.3e-07 60.5 135 29.6
PGSC0003DMG400024920 Solanum tuberosum HOM05D000986 ORTHO05D000794 1.3e-07 60.5 133 27.1
CAN.G798.64 Capsicum annuum HOM05D000986 ORTHO05D000794 1.7e-07 60.1 133 26.3
CAN.G2125.3 Capsicum annuum HOM05D000986 ORTHO05D000794 2.2e-07 59.7 135 28.1
Nitab4.5_0000787g0270 Nicotiana tabacum HOM05D000986 ORTHO05D000794 2.2e-07 59.7 135 26.7
Atru.chr11.2542 Acer truncatum HOM05D000986 ORTHO05D000794 2.9e-07 59.3 136 29.4
Actinidia25664 Actinidia chinensis HOM05D006838 ORTHO05D008915 2.9e-07 59.3 133 30.1
arahy.Tifrunner.gnm1.ann1.ZP3NZP Arachis hypogaea HOM05D000986 ORTHO05D000794 2.9e-07 59.3 133 29.3
FAN12G2595 Fragaria x ananassa HOM05D006838 ORTHO05D046149 3.7e-07 58.9 90 37.8
RcHm_v2.0_Chr4g0432191 Rosa chinensis HOM05D006838 ORTHO05D008915 3.7e-07 58.9 60 45.0
Cpa.g.sc125.57 Carica papaya HOM05D000986 ORTHO05D000794 4.9e-07 58.5 134 29.1
Duzib138G0876 Durio zibethinus HOM05D000986 ORTHO05D000794 4.9e-07 58.5 134 29.1
Medtr0003s0630 Medicago truncatula HOM05D000986 ORTHO05D000794 4.9e-07 58.5 134 32.8
Nitab4.5_0007295g0010 Nicotiana tabacum HOM05D000986 ORTHO05D000794 4.9e-07 58.5 133 27.1
ATR0149G012 Amborella trichopoda HOM05D000986 ORTHO05D000794 6.4e-07 58.2 134 29.9
CDE04G0314 Ceratophyllum demersum HOM05D000986 ORTHO05D000794 6.4e-07 58.2 133 27.8
CAN.G798.63 Capsicum annuum HOM05D000986 ORTHO05D000794 8.3e-07 57.8 135 27.4
Ciclev10002584m.g Citrus clementina HOM05D000986 ORTHO05D000794 1.1e-06 57.4 133 30.1
CBR_g23810 Chara braunii HOM05D000986 ORTHO05D000794 1.4e-06 57.0 137 24.8
Nitab4.5_0007295g0030 Nicotiana tabacum HOM05D000986 ORTHO05D000794 1.9e-06 56.6 133 26.3
SGA_v2.0_scaffold272G46378 Striga asiatica HOM05D000986 ORTHO05D000794 1.9e-06 56.6 133 27.1
Oeu045932.1 Olea europaea HOM05D000986 ORTHO05D000794 5.4e-06 55.1 133 26.3
MD08G1241000 Malus domestica HOM05D000986 ORTHO05D000794 7.0e-06 54.7 133 27.8
CiPaw.06G173400 Carya illinoinensis HOM05D000986 ORTHO05D000794 9.2e-06 54.3 133 26.3
Oeu045926.1 Olea europaea HOM05D000986 ORTHO05D000794 9.2e-06 54.3 133 25.6


User provided reference genes

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