Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g03915_MAGBIO Magnolia biondii HOM05D000716 ORTHO05D037976 3.4e-53 211.5 111 100.0
MBI12_g03912_MAGBIO Magnolia biondii HOM05D000716 ORTHO05D004822 3.1e-38 161.8 97 90.7
TAR629G3067 Trochodendron aralioides HOM05D000716 ORTHO05D004822 9.3e-27 123.6 102 65.7
Rhsim01G0176300 Rhododendron simsii HOM05D000716 ORTHO05D004822 1.0e-25 120.2 105 66.7
Manes.05G019700 Manihot esculenta HOM05D000716 ORTHO05D004822 5.1e-25 117.9 101 65.3
Actinidia34245 Actinidia chinensis HOM05D000716 ORTHO05D037976 3.3e-24 115.2 98 64.3
Ciclev10018671m.g Citrus clementina HOM05D000716 ORTHO05D004822 7.4e-24 114.0 102 58.8
Haze_15695 Corylus avellana HOM05D000716 ORTHO05D004822 7.4e-24 114.0 101 60.4
DCAR_022124 Daucus carota HOM05D000716 ORTHO05D004822 9.6e-24 113.6 101 59.4
Atru.chr5.723 Acer truncatum HOM05D000716 ORTHO05D004822 1.3e-23 113.2 106 60.4
vmacro12590 Vaccinium macrocarpon HOM05D000716 ORTHO05D004822 1.3e-23 113.2 101 61.4
Duzib138G0425 Durio zibethinus HOM05D000716 ORTHO05D004822 1.1e-22 110.2 105 57.1
Sabra12G0013300 Salix brachista HOM05D000716 ORTHO05D004822 1.4e-22 109.8 98 61.2
Prupe.2G193400 Prunus persica HOM05D000716 ORTHO05D004822 1.8e-22 109.4 102 60.8
QL08p046141 Quercus lobata HOM05D000716 ORTHO05D004822 1.8e-22 109.4 102 58.8
Hma1.2p1_0180F.1_g079700 Hydrangea macrophylla HOM05D000716 ORTHO05D004822 4.0e-22 108.2 100 62.0
Ca_23505_v3 Cicer arietinum L. HOM05D000716 ORTHO05D004822 5.3e-22 107.8 101 61.4
MD01G1085600 Malus domestica HOM05D000716 ORTHO05D004822 1.2e-21 106.7 102 57.8
PSO782G0480 Papaver somniferum HOM05D000716 ORTHO05D004822 1.2e-21 106.7 101 57.4
CiPaw.02G042600 Carya illinoinensis HOM05D000716 ORTHO05D004822 1.5e-21 106.3 101 57.4
MD07G1154800 Malus domestica HOM05D000716 ORTHO05D004822 7.6e-21 104.0 102 56.9
PSO063G0331 Papaver somniferum HOM05D000716 ORTHO05D004822 1.0e-20 103.6 101 56.4
ATR0810G278 Amborella trichopoda HOM05D000716 ORTHO05D004822 1.3e-20 103.2 100 54.0
CANSAT56G1817 Cannabis sativa HOM05D000716 ORTHO05D004822 3.8e-20 101.7 101 59.4
Gohir.A09G187000 Gossypium hirsutum HOM05D000716 ORTHO05D004822 3.8e-20 101.7 97 60.8
Gohir.D09G180700 Gossypium hirsutum HOM05D000716 ORTHO05D004822 3.8e-20 101.7 97 60.8
Gorai.006G202700 Gossypium raimondii HOM05D000716 ORTHO05D004822 3.8e-20 101.7 97 60.8
TPR.G15901 Trifolium pratense HOM05D000716 ORTHO05D004822 8.4e-20 100.5 101 59.4
Lj3g0002590 Lotus japonicus HOM05D000716 ORTHO05D004822 1.1e-19 100.1 97 58.8
COL.COLO4_06251 Corchorus olitorius HOM05D000716 ORTHO05D004822 7.1e-19 97.4 100 54.0
FvH4_7g17110 Fragaria vesca HOM05D000716 ORTHO05D004822 7.1e-19 97.4 102 52.9
FAN06G0490 Fragaria x ananassa HOM05D000716 ORTHO05D004822 7.1e-19 97.4 102 52.9
FAN06G4235 Fragaria x ananassa HOM05D000716 ORTHO05D004822 7.1e-19 97.4 102 52.9
FAN10G3757 Fragaria x ananassa HOM05D000716 ORTHO05D004822 7.1e-19 97.4 102 52.0
arahy.Tifrunner.gnm1.ann1.H7GH5Q Arachis hypogaea HOM05D000716 ORTHO05D004822 9.3e-19 97.1 96 54.2
FAN01G0928 Fragaria x ananassa HOM05D000716 ORTHO05D004822 9.3e-19 97.1 102 52.9
SalBow3G1115 Salvia bowleyana HOM05D000716 ORTHO05D004822 9.3e-19 97.1 108 50.9
SalBow3G3270 Salvia bowleyana HOM05D000716 ORTHO05D004822 9.3e-19 97.1 108 50.9
GSVIVG01027197001 Vitis vinifera HOM05D000716 ORTHO05D004822 1.2e-18 96.7 95 56.8
Glyma.16G022000 Glycine max HOM05D000716 ORTHO05D004822 1.6e-18 96.3 101 56.4
Lalb_Chr04g0261401 Lupinus albus HOM05D000716 ORTHO05D004822 2.1e-18 95.9 101 52.5
Glyma.07G052900 Glycine max HOM05D000716 ORTHO05D004822 2.7e-18 95.5 101 56.4
Psat4g163240 Pisum sativum HOM05D000716 ORTHO05D004822 3.5e-18 95.1 98 54.1
TPR.G4752 Trifolium pratense HOM05D000716 ORTHO05D004822 3.5e-18 95.1 101 53.5
arahy.Tifrunner.gnm1.ann1.DFZ2U0 Arachis hypogaea HOM05D000716 ORTHO05D004822 4.6e-18 94.7 96 53.1
Psat3g001560 Pisum sativum HOM05D000716 ORTHO05D004822 6.0e-18 94.4 101 53.5
CDE11G0523 Ceratophyllum demersum HOM05D000716 ORTHO05D004822 6.7e-17 90.9 108 48.1
FAN03G1877 Fragaria x ananassa HOM05D000716 ORTHO05D004822 3.3e-16 88.6 102 49.0
SGA_v2.0_scaffold5G03045 Striga asiatica HOM05D000716 ORTHO05D004822 3.3e-16 88.6 95 52.6
Oeu004988.1 Olea europaea HOM05D000716 ORTHO05D004822 7.4e-16 87.4 98 50.0
Nitab4.5_0002780g0130 Nicotiana tabacum HOM05D000716 ORTHO05D004822 2.2e-15 85.9 101 47.5
Ca_04529_v3 Cicer arietinum L. HOM05D000716 ORTHO05D008300 6.3e-15 84.3 99 47.5
Ca_30978_v3 Cicer arietinum L. HOM05D000716 ORTHO05D008300 6.3e-15 84.3 99 47.5
Nitab4.5_0008335g0050 Nicotiana tabacum HOM05D000716 ORTHO05D004822 6.3e-15 84.3 101 47.5
VMungo0331G1892 Vigna mungo HOM05D000716 ORTHO05D004822 1.1e-14 83.6 101 49.5
Phvul.010G116400 Phaseolus vulgaris HOM05D000716 ORTHO05D004822 1.4e-14 83.2 79 55.7
ATR0721G009 Amborella trichopoda HOM05D000716 ORTHO05D008300 5.3e-14 81.3 112 43.8
Medtr3g019360 Medicago truncatula HOM05D000716 ORTHO05D008300 5.3e-14 81.3 99 46.5
TPR.G3874 Trifolium pratense HOM05D000716 ORTHO05D008300 6.9e-14 80.9 99 46.5
CAN.G481.53 Capsicum annuum HOM05D000716 ORTHO05D004822 1.2e-13 80.1 95 46.3
Phvul.005G031100 Phaseolus vulgaris HOM05D000716 ORTHO05D008300 1.2e-13 80.1 99 45.5
SalBow2G3520 Salvia bowleyana HOM05D000716 ORTHO05D004822 1.5e-13 79.7 103 43.7
SMO364G0870 Selaginella moellendorffii HOM05D000716 ORTHO05D004822 1.5e-13 79.7 103 50.5
Lsat_1_v5_gn_9_49341 Lactuca sativa HOM05D000716 ORTHO05D004822 2.6e-13 79.0 98 44.9
Lj3g0003771 Lotus japonicus HOM05D000716 ORTHO05D008300 3.4e-13 78.6 99 46.5
CDE04G2607 Ceratophyllum demersum HOM05D000716 ORTHO05D004822 4.5e-13 78.2 93 48.4
PGSC0003DMG400018516 Solanum tuberosum HOM05D000716 ORTHO05D004822 4.5e-13 78.2 95 46.3
Psat5g217360 Pisum sativum HOM05D000716 ORTHO05D008300 5.9e-13 77.8 99 45.5
PGR031G0769 Punica granatum HOM05D000716 ORTHO05D008300 5.9e-13 77.8 98 48.0
Solyc03g082690.3 Solanum lycopersicum HOM05D000716 ORTHO05D004822 7.6e-13 77.4 95 46.3
Glyma.11G114500 Glycine max HOM05D000716 ORTHO05D008300 1.0e-12 77.0 99 48.5
HanXRQChr16g0524691 Helianthus annuus HOM05D000716 ORTHO05D004822 1.3e-12 76.6 102 42.2
Sopen03g022450 Solanum pennellii HOM05D000716 ORTHO05D004822 1.3e-12 76.6 95 46.3
Glyma.12G040400 Glycine max HOM05D000716 ORTHO05D008300 1.7e-12 76.3 99 46.5
Potri.001G024600 Populus trichocarpa HOM05D000716 ORTHO05D008300 1.7e-12 76.3 99 45.5
SEGI_29821 Sequoiadendron giganteum HOM05D000716 ORTHO05D004822 1.7e-12 76.3 109 45.0
arahy.Tifrunner.gnm1.ann1.G6Z95W Arachis hypogaea HOM05D000716 ORTHO05D008300 2.2e-12 75.9 99 45.5
VMungo1080G1793 Vigna mungo HOM05D000716 ORTHO05D008300 2.2e-12 75.9 99 44.4
Sabra03G0148600 Salix brachista HOM05D000716 ORTHO05D008300 2.9e-12 75.5 99 45.5
FAN03G0513 Fragaria x ananassa HOM05D000716 ORTHO05D008300 3.8e-12 75.1 99 45.5
arahy.Tifrunner.gnm1.ann1.FKA8YF Arachis hypogaea HOM05D000716 ORTHO05D008300 5.0e-12 74.7 99 45.5
TAR623G0975 Trochodendron aralioides HOM05D000716 ORTHO05D008300 5.0e-12 74.7 99 46.5
CSS0010368 Camellia sinensis var. sinensis HOM05D000716 ORTHO05D008300 8.5e-12 73.9 99 45.5
COL.COLO4_35450 Corchorus olitorius HOM05D000716 ORTHO05D008300 8.5e-12 73.9 99 46.5
Lsat_1_v5_gn_6_75620 Lactuca sativa HOM05D000716 ORTHO05D004822 1.1e-11 73.6 98 40.8
Duzib114G0335 Durio zibethinus HOM05D000716 ORTHO05D008300 1.4e-11 73.2 99 44.4
PGSC0003DMG400000836 Solanum tuberosum HOM05D000716 ORTHO05D008300 2.5e-11 72.4 99 43.4
Cpa.g.sc197.3 Carica papaya HOM05D000716 ORTHO05D008300 3.2e-11 72.0 99 47.5
Lsat_1_v5_gn_4_66881 Lactuca sativa HOM05D000716 ORTHO05D004822 3.2e-11 72.0 98 39.8
FvH4_7g02490 Fragaria vesca HOM05D000716 ORTHO05D008300 4.2e-11 71.6 99 44.4
FAN06G4889 Fragaria x ananassa HOM05D000716 ORTHO05D008300 4.2e-11 71.6 99 44.4
Thecc.10G170700 Theobroma cacao HOM05D000716 ORTHO05D008300 4.2e-11 71.6 99 43.4
Oeu003919.1 Olea europaea HOM05D000716 ORTHO05D008300 5.5e-11 71.2 99 42.4
Gohir.D10G189200 Gossypium hirsutum HOM05D000716 ORTHO05D008300 7.2e-11 70.9 99 44.4
Gorai.011G212500 Gossypium raimondii HOM05D000716 ORTHO05D008300 7.2e-11 70.9 99 44.4
Rhsim07G0063200 Rhododendron simsii HOM05D000716 ORTHO05D008300 7.2e-11 70.9 99 43.4
Actinidia06267 Actinidia chinensis HOM05D000716 ORTHO05D008300 9.4e-11 70.5 99 44.4
Nitab4.5_0000316g0100 Nicotiana tabacum HOM05D000716 ORTHO05D008300 9.4e-11 70.5 93 44.1
TWI63G0606 Tripterygium wilfordii HOM05D000716 ORTHO05D008300 9.4e-11 70.5 99 43.4
ECA232G2994 Erigeron canadensis HOM05D000716 ORTHO05D004822 1.2e-10 70.1 109 40.4
vmacro13734 Vaccinium macrocarpon HOM05D000716 ORTHO05D008300 1.6e-10 69.7 99 42.4
Haze_03059 Corylus avellana HOM05D000321 ORTHO05D008300 2.1e-10 69.3 99 43.4
RcHm_v2.0_Chr1g0321131 Rosa chinensis HOM05D000716 ORTHO05D008300 2.1e-10 69.3 99 43.4
SMO364G0541 Selaginella moellendorffii HOM05D000716 ORTHO05D004822 2.1e-10 69.3 94 45.7
MBI19_g23016_MAGBIO Magnolia biondii HOM05D000716 ORTHO05D008300 2.7e-10 68.9 99 42.4
Cc02_g30350 Coffea canephora HOM05D000716 ORTHO05D008300 3.6e-10 68.6 99 44.4
Dinv32617 Davidia involucrata HOM05D000716 ORTHO05D004822 3.6e-10 68.6 95 44.2
Sabra01G0018300 Salix brachista HOM05D000716 ORTHO05D008300 7.9e-10 67.4 99 42.4
TWI38G2247 Tripterygium wilfordii HOM05D000716 ORTHO05D008300 7.9e-10 67.4 99 40.4
Zm00001eb141210 Zea mays HOM05D000716 ORTHO05D008300 7.9e-10 67.4 99 40.4
Lj3g0026059 Lotus japonicus HOM05D000716 ORTHO05D008300 1.0e-09 67.0 96 42.7
MD07G1034100 Malus domestica HOM05D000716 ORTHO05D008300 1.8e-09 66.2 99 41.4
Nitab4.5_0001888g0050 Nicotiana tabacum HOM05D000716 ORTHO05D008300 1.8e-09 66.2 90 43.3
CsaV3_5G014750 Cucumis sativus L. HOM05D000716 ORTHO05D008300 2.3e-09 65.9 99 42.4
MELO3C015024.2 Cucumis melo HOM05D000716 ORTHO05D008300 3.0e-09 65.5 99 42.4
Os01g0948500 Oryza sativa ssp. japonica HOM05D000716 ORTHO05D008300 3.0e-09 65.5 99 40.4
Peaxi162Scf00309g00334 Petunia axillaris HOM05D000716 ORTHO05D008300 3.0e-09 65.5 97 40.2
HPP92_006717 Vanilla planifolia HOM05D000716 ORTHO05D008300 6.7e-09 64.3 99 42.4
HPP92_006721 Vanilla planifolia HOM05D000716 ORTHO05D008300 6.7e-09 64.3 99 42.4
ClCG05G020740 Citrullus lanatus HOM05D000716 ORTHO05D008300 8.8e-09 63.9 99 41.4
PSO339G0025 Papaver somniferum HOM05D000716 ORTHO05D008300 1.1e-08 63.5 99 40.4
Gohir.A10G182500 Gossypium hirsutum HOM05D000716 ORTHO05D008300 4.3e-08 61.6 99 39.4
PSO384G1427 Papaver somniferum HOM05D000716 ORTHO05D008300 4.3e-08 61.6 99 39.4
Migut.N01827 Erythranthe guttata HOM05D000716 ORTHO05D008300 5.7e-08 61.2 96 37.5
PGSC0003DMG400000837 Solanum tuberosum HOM05D000716 ORTHO05D008300 7.4e-08 60.8 92 39.1
Sed0026818 Sechium edule HOM05D000716 ORTHO05D008300 1.3e-07 60.1 96 40.6
HPP92_025008 Vanilla planifolia HOM05D000716 ORTHO05D008300 1.7e-07 59.7 110 36.4
MD02G1293000 Malus domestica HOM05D000716 ORTHO05D008300 2.2e-07 59.3 99 37.4
Prupe.2G030600 Prunus persica HOM05D000716 ORTHO05D008300 2.2e-07 59.3 99 38.4
Potri.003G201000 Populus trichocarpa HOM05D000716 ORTHO05D008300 2.8e-07 58.9 99 37.4
QL09p007682 Quercus lobata HOM05D000716 ORTHO05D004822 3.7e-07 58.5 102 36.3
Eucgr.E02417 Eucalyptus grandis HOM05D000716 ORTHO05D004822 6.3e-07 57.8 102 39.2
Duzib128G1102 Durio zibethinus HOM05D000716 ORTHO05D008300 8.2e-07 57.4 99 39.4
Actinidia14086 Actinidia chinensis HOM05D000716 ORTHO05D008300 1.4e-06 56.6 99 41.4
Actinidia19449 Actinidia chinensis HOM05D000716 ORTHO05D008300 1.4e-06 56.6 99 41.4
Peaxi162Scf00740g00335 Petunia axillaris HOM05D000716 ORTHO05D004822 1.4e-06 56.6 95 37.9
Nn3g18901 Nelumbo nucifera HOM05D000716 ORTHO05D004822 5.3e-06 54.7 95 35.8
Medtr8g027140 Medicago truncatula HOM05D000716 ORTHO05D004822 6.9e-06 54.3 39 66.7
Aqoxy1G00338 Aquilegia oxysepala HOM05D000716 ORTHO05D008300 9.1e-06 53.9 99 36.4


User provided reference genes

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