Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g47562_MAGBIO Magnolia biondii HOM05D055360 ORTHO05D242736 8.6e-76 287.0 151 100.0
MBI18_g04899_MAGBIO Magnolia biondii HOM05D055360 ORTHO05D242114 2.2e-15 86.3 61 75.4
MBI02_g08721_MAGBIO Magnolia biondii HOM05D000154 ORTHO05D000092 3.7e-10 68.9 40 87.5
Rhsim11G0136500 Rhododendron simsii HOM05D000154 ORTHO05D000092 4.8e-10 68.6 40 85.0
TWI59G1273 Tripterygium wilfordii HOM05D000154 ORTHO05D000092 4.8e-10 68.6 40 85.0
MBI16_g25486_MAGBIO Magnolia biondii HOM05D000154 ORTHO05D000092 1.1e-09 67.4 40 85.0
Hma1.2p1_0522F.1_g171660 Hydrangea macrophylla HOM05D000154 ORTHO05D000092 1.4e-09 67.0 40 82.5
Phvul.002G208700 Phaseolus vulgaris HOM05D000154 ORTHO05D000092 1.4e-09 67.0 40 82.5
CANSAT11G1123 Cannabis sativa HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Cfa005602 Carpinus fangiana HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Ca_00134_v3 Cicer arietinum L. HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Ciclev10024889m.g Citrus clementina HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Duzib132G0898 Durio zibethinus HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
FvH4_2g11940 Fragaria vesca HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
FAN15G0347 Fragaria x ananassa HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
FAN24G0811 Fragaria x ananassa HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
FAN27G0205 Fragaria x ananassa HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Glyma.08G179100 Glycine max HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Glyma.15G053400 Glycine max HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Lj6g0018928 Lotus japonicus HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
MD05G1045000 Malus domestica HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
MD10G1051900 Malus domestica HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Manes.14G165600 Manihot esculenta HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Medtr2g008820 Medicago truncatula HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Nn5g30121 Nelumbo nucifera HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Phvul.006G206600 Phaseolus vulgaris HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
Prupe.8G060500 Prunus persica HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
RcHm_v2.0_Chr6g0271831 Rosa chinensis HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
vmacro01823 Vaccinium macrocarpon HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
VMungo0540G2119 Vigna mungo HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
GSVIVG01038738001 Vitis vinifera HOM05D000154 ORTHO05D000092 1.8e-09 66.6 40 82.5
FAN20G1985 Fragaria x ananassa HOM05D000154 ORTHO05D000092 2.4e-09 66.2 40 82.5
Actinidia00267 Actinidia chinensis HOM05D000154 ORTHO05D000092 3.1e-09 65.9 40 82.5
Actinidia23994 Actinidia chinensis HOM05D000154 ORTHO05D000092 3.1e-09 65.9 40 82.5
Ah.10g029420 Amaranthus hybridus HOM05D000154 ORTHO05D000092 3.1e-09 65.9 40 80.0
EL10Ac7g16194 Beta vulgaris HOM05D000154 ORTHO05D000092 3.1e-09 65.9 40 80.0
Psat2g058480 Pisum sativum HOM05D000154 ORTHO05D000092 3.1e-09 65.9 40 80.0
Psat5g178320 Pisum sativum HOM05D000154 ORTHO05D000092 3.1e-09 65.9 40 80.0
TPR.G23015 Trifolium pratense HOM05D000154 ORTHO05D000092 3.1e-09 65.9 40 80.0
arahy.Tifrunner.gnm1.ann1.SH3WT2 Arachis hypogaea HOM05D000154 ORTHO05D000092 4.1e-09 65.5 40 82.5
arahy.Tifrunner.gnm1.ann1.W8G9JC Arachis hypogaea HOM05D000154 ORTHO05D000092 4.1e-09 65.5 40 82.5
Lalb_Chr17g0340181 Lupinus albus HOM05D000154 ORTHO05D000092 4.1e-09 65.5 40 80.0
Potri.001G205500 Populus trichocarpa HOM05D000154 ORTHO05D000092 4.1e-09 65.5 40 80.0
PGR042G0914 Punica granatum HOM05D000154 ORTHO05D000092 4.1e-09 65.5 40 80.0
CSS0046704 Camellia sinensis var. sinensis HOM05D000154 ORTHO05D000092 5.3e-09 65.1 40 82.5
COL.COLO4_24942 Corchorus olitorius HOM05D000154 ORTHO05D000092 5.3e-09 65.1 40 80.0
Dinv09032 Davidia involucrata HOM05D000154 ORTHO05D000092 5.3e-09 65.1 40 80.0
Glyma.05G117500 Glycine max HOM05D000154 ORTHO05D000092 5.3e-09 65.1 40 82.5
PSO210G5130 Papaver somniferum HOM05D000154 ORTHO05D000092 5.3e-09 65.1 40 80.0
PSO447G0287 Papaver somniferum HOM05D000154 ORTHO05D000092 5.3e-09 65.1 40 80.0
TWI23G0993 Tripterygium wilfordii HOM05D000154 ORTHO05D000092 5.3e-09 65.1 40 80.0
TAR628G0352 Trochodendron aralioides HOM05D000154 ORTHO05D000092 5.3e-09 65.1 40 80.0
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 7.0e-09 64.7 40 82.5
AUR62001622 Chenopodium quinoa HOM05D000154 ORTHO05D000092 7.0e-09 64.7 40 77.5
AUR62020155 Chenopodium quinoa HOM05D000154 ORTHO05D000092 7.0e-09 64.7 40 77.5
Nitab4.5_0002533g0020 Nicotiana tabacum HOM05D000154 ORTHO05D000092 7.0e-09 64.7 40 80.0
Lj5C239G18 Lonicera japonica HOM05D000154 ORTHO05D000092 9.1e-09 64.3 40 80.0
Hund20987 Selenicereus undatus HOM05D000154 ORTHO05D000092 9.1e-09 64.3 40 77.5
Aqoxy5G01892 Aquilegia oxysepala HOM05D000154 ORTHO05D000092 1.2e-08 63.9 40 77.5
Peaxi162Scf00003g03544 Petunia axillaris HOM05D000154 ORTHO05D000092 1.2e-08 63.9 40 77.5
arahy.Tifrunner.gnm1.ann1.5I107V Arachis hypogaea HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
arahy.Tifrunner.gnm1.ann1.I2KX6G Arachis hypogaea HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
MSTRG.16583 Avicennia marina HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
Cpa.g.sc42.50 Carica papaya HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
Cc02_g21560 Coffea canephora HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
Migut.B00611 Erythranthe guttata HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
Eucgr.I02664 Eucalyptus grandis HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
Gohir.A12G015100 Gossypium hirsutum HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
Gohir.D12G015500 Gossypium hirsutum HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
Gorai.008G015600 Gossypium raimondii HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
Lj9A353G67 Lonicera japonica HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 77.5
Lalb_Chr04g0256541 Lupinus albus HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
QL11p020338 Quercus lobata HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
QL11p020834 Quercus lobata HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
SalBow5G0071 Salvia bowleyana HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
SGA_v2.0_scaffold83G26301 Striga asiatica HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
VMungo0251G0047 Vigna mungo HOM05D000154 ORTHO05D000092 1.6e-08 63.5 40 80.0
CSS0031399 Camellia sinensis var. sinensis HOM05D000154 ORTHO05D000092 2.0e-08 63.2 40 77.5
DCAR_021857 Daucus carota HOM05D000154 ORTHO05D000092 2.0e-08 63.2 36 88.9
Atru.chr6.1135 Acer truncatum HOM05D000154 ORTHO05D000092 2.7e-08 62.8 40 77.5
Aa31sc280G20 Aethionema arabicum HOM05D000154 ORTHO05D000092 2.7e-08 62.8 40 75.0
CiPaw.05G035700 Carya illinoinensis HOM05D000154 ORTHO05D000092 2.7e-08 62.8 40 80.0
Gohir.A04G113500 Gossypium hirsutum HOM05D000154 ORTHO05D000092 2.7e-08 62.8 40 75.0
Hma1.2p1_0704F.1_g206660 Hydrangea macrophylla HOM05D000154 ORTHO05D000092 2.7e-08 62.8 40 75.0
Nitab4.5_0005015g0010 Nicotiana tabacum HOM05D000154 ORTHO05D000092 2.7e-08 62.8 40 75.0
Nitab4.5_0007300g0010 Nicotiana tabacum HOM05D000154 ORTHO05D000092 2.7e-08 62.8 40 75.0
PGR142G4473 Punica granatum HOM05D000154 ORTHO05D000092 2.7e-08 62.8 40 77.5
CiPaw.06G153200 Carya illinoinensis HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 77.5
Ca_18352_v3 Cicer arietinum L. HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 75.0
Lsat_1_v5_gn_9_117201 Lactuca sativa HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 80.0
Lalb_Chr10g0097831 Lupinus albus HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 80.0
Psat1g216640 Pisum sativum HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 77.5
Potri.003G023900 Populus trichocarpa HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 77.5
Sabra03G0015000 Salix brachista HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 77.5
Hund18837 Selenicereus undatus HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 75.0
THA.LOC104807165 Tarenaya hassleriana HOM05D000154 ORTHO05D000092 3.5e-08 62.4 40 75.0
CAN.G523.73 Capsicum annuum HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 77.5
Dinv24192 Davidia involucrata HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 77.5
Medtr5g070670 Medicago truncatula HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 77.5
Oeu019226.1 Olea europaea HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 77.5
Solyc01g105150.4 Solanum lycopersicum HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 77.5
Sopen01g047680 Solanum pennellii HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 77.5
PGSC0003DMG400012585 Solanum tuberosum HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 77.5
Thecc.02G138800 Theobroma cacao HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 77.5
HPP92_017583 Vanilla planifolia HOM05D000154 ORTHO05D000092 4.5e-08 62.0 40 82.5
ClCG10G009240 Citrullus lanatus HOM05D000154 ORTHO05D000092 5.9e-08 61.6 40 77.5
MELO3C019015.2 Cucumis melo HOM05D000154 ORTHO05D000092 5.9e-08 61.6 40 77.5
CsaV3_4G009430 Cucumis sativus L. HOM05D000154 ORTHO05D000092 5.9e-08 61.6 40 77.5
Nitab4.5_0002576g0020 Nicotiana tabacum HOM05D000154 ORTHO05D000092 5.9e-08 61.6 40 77.5
Sed0000600 Sechium edule HOM05D000154 ORTHO05D000092 5.9e-08 61.6 40 77.5
Sed0011887 Sechium edule HOM05D000154 ORTHO05D000092 5.9e-08 61.6 40 77.5
Gohir.D04G154800 Gossypium hirsutum HOM05D000154 ORTHO05D000092 1.0e-07 60.8 40 72.5
Gorai.012G142000 Gossypium raimondii HOM05D000154 ORTHO05D000092 1.0e-07 60.8 40 72.5
Glyma.08G072500 Glycine max HOM05D000154 ORTHO05D000092 1.3e-07 60.5 40 77.5
Lj4g0009035 Lotus japonicus HOM05D000154 ORTHO05D000092 1.3e-07 60.5 40 77.5
Solyc10g047270.2 Solanum lycopersicum HOM05D000154 ORTHO05D000092 1.3e-07 60.5 40 72.5
Sopen10g017500 Solanum pennellii HOM05D000154 ORTHO05D000092 1.3e-07 60.5 40 72.5
THA.LOC104818441 Tarenaya hassleriana HOM05D000154 ORTHO05D000092 1.3e-07 60.5 40 77.5
Aa31LG3G17610 Aethionema arabicum HOM05D000154 ORTHO05D000092 1.7e-07 60.1 57 61.4
ATR0118G021 Amborella trichopoda HOM05D000154 ORTHO05D000092 1.7e-07 60.1 40 75.0
BcaB05g21556 Brassica carinata HOM05D000154 ORTHO05D000092 1.7e-07 60.1 57 61.4
Carub.0006s0795 Capsella rubella HOM05D000154 ORTHO05D000092 1.7e-07 60.1 57 61.4
Thhalv10012655m.g Eutrema salsugineum HOM05D000154 ORTHO05D000092 1.7e-07 60.1 57 61.4
Sp6g33930 Schrenkiella parvula HOM05D000154 ORTHO05D000092 1.7e-07 60.1 57 61.4
AL7G18000 Arabidopsis lyrata HOM05D000154 ORTHO05D000092 2.2e-07 59.7 40 72.5
AT4G33530 Arabidopsis thaliana HOM05D000154 ORTHO05D000092 2.2e-07 59.7 40 72.5
A01p04730 Brassica napus HOM05D000154 ORTHO05D000092 2.2e-07 59.7 44 68.2
BraA01t00456Z Brassica rapa HOM05D000154 ORTHO05D000092 2.2e-07 59.7 44 68.2
ECA240G1093 Erigeron canadensis HOM05D000154 ORTHO05D000092 2.2e-07 59.7 40 75.0
HanXRQChr03g0066921 Helianthus annuus HOM05D000154 ORTHO05D000092 2.2e-07 59.7 40 75.0
HanXRQChr09g0249571 Helianthus annuus HOM05D000154 ORTHO05D000092 2.2e-07 59.7 40 75.0
BcaC09g52170 Brassica carinata HOM05D000154 ORTHO05D000092 2.9e-07 59.3 40 72.5
C01p05140 Brassica napus HOM05D000154 ORTHO05D000092 2.9e-07 59.3 40 72.5
BolC1t00494H Brassica oleracea HOM05D000154 ORTHO05D000092 2.9e-07 59.3 40 72.5
Thhalv10024388m.g Eutrema salsugineum HOM05D000154 ORTHO05D000092 2.9e-07 59.3 40 72.5
Sp7g31270 Schrenkiella parvula HOM05D000154 ORTHO05D000092 2.9e-07 59.3 40 72.5
MSTRG.5267 Avicennia marina HOM05D000154 ORTHO05D000092 3.8e-07 58.9 40 72.5
DCAR_001786 Daucus carota HOM05D000154 ORTHO05D000092 3.8e-07 58.9 40 72.5
HanXRQChr16g0514311 Helianthus annuus HOM05D000154 ORTHO05D000092 3.8e-07 58.9 46 69.6
Peaxi162Scf00001g00018 Petunia axillaris HOM05D000154 ORTHO05D000092 3.8e-07 58.9 40 72.5
AL6G19790 Arabidopsis lyrata HOM05D000154 ORTHO05D000092 5.0e-07 58.5 57 59.6
AT5G09400 Arabidopsis thaliana HOM05D000154 ORTHO05D000092 5.0e-07 58.5 57 59.6
CAN.G763.4 Capsicum annuum HOM05D000154 ORTHO05D000092 6.5e-07 58.2 38 76.3
Oeu047358.1 Olea europaea HOM05D000154 ORTHO05D000092 6.5e-07 58.2 40 72.5
A03p04120 Brassica napus HOM05D000154 ORTHO05D000092 1.9e-06 56.6 57 57.9
C03p04580 Brassica napus HOM05D000154 ORTHO05D000092 1.9e-06 56.6 57 57.9
BolC3t12990H Brassica oleracea HOM05D000154 ORTHO05D000092 1.9e-06 56.6 57 57.9
BraA03t09756Z Brassica rapa HOM05D000154 ORTHO05D000092 1.9e-06 56.6 57 57.9
Carub.0007s0692 Capsella rubella HOM05D000154 ORTHO05D000092 1.9e-06 56.6 40 70.0
Lsat_1_v5_gn_5_107340 Lactuca sativa HOM05D000154 ORTHO05D000092 2.5e-06 56.2 46 67.4
BcaB05g22035 Brassica carinata HOM05D000154 ORTHO05D000092 4.2e-06 55.5 154 33.1
ECA234G4228 Erigeron canadensis HOM05D000154 ORTHO05D000092 4.2e-06 55.5 40 67.5
Os04g0610700 Oryza sativa ssp. japonica HOM05D000154 ORTHO05D000092 4.2e-06 55.5 40 65.0


User provided reference genes

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