Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g29032_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 6.2e-180 634.0 323 100.0
QL08p053081 Quercus lobata HOM05D005700 ORTHO05D007035 4.6e-66 255.8 206 67.5
GSVIVG01016163001 Vitis vinifera HOM05D005700 ORTHO05D007035 6.0e-66 255.4 204 65.2
CiPaw.02G170000 Carya illinoinensis HOM05D005700 ORTHO05D007035 1.0e-65 254.6 202 67.3
Atru.chr12.910 Acer truncatum HOM05D005700 ORTHO05D007035 1.7e-65 253.8 249 57.4
Prupe.2G094500 Prunus persica HOM05D005700 ORTHO05D007035 1.7e-65 253.8 249 57.0
Aqoxy1G01068 Aquilegia oxysepala HOM05D005700 ORTHO05D007035 3.9e-65 252.7 220 61.8
vmacro10263 Vaccinium macrocarpon HOM05D005700 ORTHO05D007035 8.6e-65 251.5 252 58.7
Hma1.2p1_0454F.1_g156230 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 1.5e-64 250.8 249 58.6
CiPaw.01G265100 Carya illinoinensis HOM05D005700 ORTHO05D007035 1.9e-64 250.4 205 65.4
Manes.11G085375 Manihot esculenta HOM05D005700 ORTHO05D007035 2.5e-64 250.0 255 57.6
HanXRQChr14g0456161 Helianthus annuus HOM05D005700 ORTHO05D007035 3.3e-64 249.6 252 56.3
Cfa001774 Carpinus fangiana HOM05D005700 ORTHO05D007035 4.3e-64 249.2 204 64.7
THA.LOC104823196 Tarenaya hassleriana HOM05D005700 ORTHO05D007035 7.3e-64 248.4 260 55.4
Migut.F01676 Erythranthe guttata HOM05D005700 ORTHO05D007035 1.6e-63 247.3 199 64.8
SalBow6G6710 Salvia bowleyana HOM05D005700 ORTHO05D007035 2.1e-63 246.9 203 64.0
PSO063G2079 Papaver somniferum HOM05D005700 ORTHO05D007035 3.6e-63 246.1 203 64.0
Actinidia38892 Actinidia chinensis HOM05D005700 ORTHO05D007035 4.7e-63 245.7 203 65.0
Actinidia34788 Actinidia chinensis HOM05D005700 ORTHO05D007035 6.2e-63 245.4 205 64.4
Ciclev10032582m.g Citrus clementina HOM05D005700 ORTHO05D007035 6.2e-63 245.4 207 61.8
Lalb_Chr01g0010291 Lupinus albus HOM05D005700 ORTHO05D007035 6.2e-63 245.4 191 65.4
Lj1g0010858 Lotus japonicus HOM05D005700 ORTHO05D007035 1.1e-62 244.6 201 62.7
PSO339G4237 Papaver somniferum HOM05D005700 ORTHO05D007035 1.1e-62 244.6 203 63.5
Peaxi162Scf01201g00017 Petunia axillaris HOM05D005700 ORTHO05D007035 1.1e-62 244.6 230 59.1
PGR142G0169 Punica granatum HOM05D005700 ORTHO05D007035 1.8e-62 243.8 256 53.9
Solyc05g055430.4 Solanum lycopersicum HOM05D005700 ORTHO05D007035 1.8e-62 243.8 257 54.5
Gohir.D04G021400 Gossypium hirsutum HOM05D005700 ORTHO05D007035 3.1e-62 243.0 235 57.0
EL10Ac4g08634 Beta vulgaris HOM05D005700 ORTHO05D007035 4.0e-62 242.7 202 63.9
Nn6g35199 Nelumbo nucifera HOM05D005700 ORTHO05D007035 4.0e-62 242.7 250 57.2
Sopen05g033880 Solanum pennellii HOM05D005700 ORTHO05D007035 4.0e-62 242.7 248 56.0
CDE09G1384 Ceratophyllum demersum HOM05D005700 ORTHO05D007035 5.2e-62 242.3 194 65.5
MSTRG.400 Avicennia marina HOM05D005700 ORTHO05D007035 8.9e-62 241.5 234 57.3
Ca_26010_v3 Cicer arietinum L. HOM05D005700 ORTHO05D007035 8.9e-62 241.5 207 62.8
Thhalv10014494m.g Eutrema salsugineum HOM05D005700 ORTHO05D007035 8.9e-62 241.5 252 54.8
Cpa.g.sc53.169 Carica papaya HOM05D005700 ORTHO05D007035 1.5e-61 240.7 256 55.1
Haze_16777 Corylus avellana HOM05D005700 ORTHO05D007035 1.5e-61 240.7 225 60.0
Gohir.A05G393500 Gossypium hirsutum HOM05D005700 ORTHO05D007035 1.5e-61 240.7 235 56.6
Sabra10G0179000 Salix brachista HOM05D005700 ORTHO05D007035 1.5e-61 240.7 211 61.1
Sed0026830 Sechium edule HOM05D005700 ORTHO05D007035 1.5e-61 240.7 203 63.1
CAN.G1891.6 Capsicum annuum HOM05D005700 ORTHO05D007035 2.6e-61 240.0 222 58.6
ECA238G2005 Erigeron canadensis HOM05D005700 ORTHO05D007035 2.6e-61 240.0 216 59.7
PGSC0003DMG400023376 Solanum tuberosum HOM05D005700 ORTHO05D007035 2.6e-61 240.0 257 52.1
MD07G1074500 Malus domestica HOM05D005700 ORTHO05D007035 3.4e-61 239.6 248 56.0
Medtr1g050530 Medicago truncatula HOM05D005700 ORTHO05D007035 3.4e-61 239.6 226 58.4
Potri.010G230900 Populus trichocarpa HOM05D005700 ORTHO05D007035 3.4e-61 239.6 203 61.6
Potri.008G030300 Populus trichocarpa HOM05D005700 ORTHO05D007035 7.5e-61 238.4 249 55.4
Phvul.007G244000 Phaseolus vulgaris HOM05D005700 ORTHO05D007035 1.3e-60 237.7 203 61.6
A10p31640 Brassica napus HOM05D005700 ORTHO05D007035 1.7e-60 237.3 256 53.5
CSS0024490 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 1.7e-60 237.3 249 56.6
RcHm_v2.0_Chr1g0336111 Rosa chinensis HOM05D005700 ORTHO05D007035 1.7e-60 237.3 198 62.1
AL6G14080 Arabidopsis lyrata HOM05D005700 ORTHO05D007035 2.2e-60 236.9 256 53.5
BraA10t45210Z Brassica rapa HOM05D005700 ORTHO05D007035 2.2e-60 236.9 256 53.5
BcaC06g32152 Brassica carinata HOM05D005700 ORTHO05D007035 4.9e-60 235.7 251 54.2
Sp6g38300 Schrenkiella parvula HOM05D005700 ORTHO05D007035 8.3e-60 235.0 203 61.1
Cc02_g10560 Coffea canephora HOM05D005700 ORTHO05D007035 1.1e-59 234.6 219 58.9
Psat6g095240 Pisum sativum HOM05D005700 ORTHO05D007035 1.1e-59 234.6 191 63.4
Sed0005120 Sechium edule HOM05D005700 ORTHO05D007035 3.2e-59 233.0 217 59.0
Lj2A24T67 Lonicera japonica HOM05D005700 ORTHO05D007035 4.1e-59 232.6 256 54.7
CANSAT56G1373 Cannabis sativa HOM05D005700 ORTHO05D007035 2.1e-58 230.3 250 54.8
Gorai.012G025500 Gossypium raimondii HOM05D005700 ORTHO05D007035 2.7e-58 229.9 259 51.7
ATR0043G051 Amborella trichopoda HOM05D005700 ORTHO05D007035 3.5e-58 229.6 197 59.9
HPP92_004967 Vanilla planifolia HOM05D005700 ORTHO05D007035 3.5e-58 229.6 192 60.9
Sc20g0001510 Simmondsia chinensis HOM05D005700 ORTHO05D007035 4.6e-58 229.2 196 60.2
Nitab4.5_0000096g0200 Nicotiana tabacum HOM05D005700 ORTHO05D007035 1.0e-57 228.0 288 49.0
Rhsim09G0145300 Rhododendron simsii HOM05D005700 ORTHO05D007035 1.7e-57 227.3 258 51.2
HanXRQChr11g0335951 Helianthus annuus HOM05D005700 ORTHO05D007035 2.3e-57 226.9 259 52.1
SGA_v2.0_scaffold41G15744 Striga asiatica HOM05D005700 ORTHO05D007035 4.7e-55 219.2 269 47.2
Lsat_1_v5_gn_2_103220 Lactuca sativa HOM05D005700 ORTHO05D007035 6.2e-55 218.8 264 48.9
TAR369G0971 Trochodendron aralioides HOM05D005700 ORTHO05D007035 4.4e-53 212.6 225 57.3
Dinv31263 Davidia involucrata HOM05D005700 ORTHO05D007035 2.9e-52 209.9 184 60.9
Hund06763 Selenicereus undatus HOM05D005700 ORTHO05D007035 6.4e-52 208.8 359 40.1
Lj1g0018185 Lotus japonicus HOM05D005700 ORTHO05D007035 2.4e-51 206.8 167 62.3
Oeu046658.1 Olea europaea HOM05D005700 ORTHO05D007035 3.2e-51 206.5 197 55.3
Nn3g19086 Nelumbo nucifera HOM05D005700 ORTHO05D007035 9.2e-51 204.9 255 51.0
FAN03G2335 Fragaria x ananassa HOM05D005700 ORTHO05D007035 1.6e-50 204.1 310 42.9
AagrBONN_evm.TU.Sc2ySwM_228.955 Anthoceros agrestis HOM05D005700 ORTHO05D007035 6.0e-50 202.2 193 53.9
FvH4_7g06650 Fragaria vesca HOM05D005700 ORTHO05D007035 7.8e-50 201.8 189 58.2
SMO196G0037 Selaginella moellendorffii HOM05D005700 ORTHO05D007035 1.3e-49 201.1 208 50.5
TWI38G0818 Tripterygium wilfordii HOM05D005700 ORTHO05D007035 1.3e-49 201.1 248 48.8
Zm00001eb003780 Zea mays HOM05D005700 ORTHO05D007035 6.6e-49 198.7 167 61.7
COL.COLO4_32883 Corchorus olitorius HOM05D005700 ORTHO05D007035 1.5e-48 197.6 170 59.4
Mapoly0083s0065 Marchantia polymorpha HOM05D005700 ORTHO05D007035 1.9e-48 197.2 192 52.6
CBR_g10878 Chara braunii HOM05D005700 ORTHO05D007035 3.3e-48 196.4 180 56.7
Pp3c1_19240 Physcomitrium patens HOM05D005700 ORTHO05D007035 4.3e-48 196.1 196 49.5
AT5G04440 Arabidopsis thaliana HOM05D005700 ORTHO05D007035 5.6e-48 195.7 235 48.1
C09p72310 Brassica napus HOM05D005700 ORTHO05D007035 3.6e-47 193.0 255 46.7
BolC9t59975H Brassica oleracea HOM05D005700 ORTHO05D007035 3.6e-47 193.0 255 46.7
Hma1.2p1_0454F.1_g156240 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 3.6e-47 193.0 210 53.3
Glyma.10G102440 Glycine max HOM05D005700 ORTHO05D007035 6.2e-47 192.2 208 54.3
Glyma.U031112 Glycine max HOM05D005700 ORTHO05D007035 8.1e-47 191.8 180 58.3
Duzib106G0901 Durio zibethinus HOM05D005700 ORTHO05D007035 1.8e-46 190.7 168 57.7
MELO3C019851.2 Cucumis melo HOM05D005700 ORTHO05D007035 3.1e-46 189.9 201 51.7
Thecc.10G089800 Theobroma cacao HOM05D005700 ORTHO05D007035 5.2e-46 189.1 224 49.1
Aa31LG11G5310 Aethionema arabicum HOM05D005700 ORTHO05D007035 2.0e-45 187.2 222 49.5
Carub.0006s0338 Capsella rubella HOM05D005700 ORTHO05D007035 3.4e-45 186.4 191 53.4
FAN10G0584 Fragaria x ananassa HOM05D005700 ORTHO05D007035 5.8e-45 185.7 351 38.2
VMungo0720G2730 Vigna mungo HOM05D005700 ORTHO05D007035 2.2e-44 183.7 206 50.0
arahy.Tifrunner.gnm1.ann1.U7ZK73 Arachis hypogaea HOM05D005700 ORTHO05D007035 4.9e-44 182.6 267 44.9
ClCG08G007920 Citrullus lanatus HOM05D005700 ORTHO05D007035 2.1e-42 177.2 209 50.7
BolC3t12759H Brassica oleracea HOM05D005700 ORTHO05D007035 6.6e-41 172.2 230 45.7
C03p02060 Brassica napus HOM05D005700 ORTHO05D007035 9.9e-37 158.3 227 43.6
CSS0044057 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 8.7e-33 145.2 163 50.3
CARHR208820 Cardamine hirsuta HOM05D005700 ORTHO05D007035 4.8e-31 139.4 149 51.0
MBI19_g03561_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 1.8e-30 137.5 81 86.4
Cre06.g264550 Chlamydomonas reinhardtii HOM05D005700 ORTHO05D007035 3.1e-30 136.7 264 34.5
PRCOL_00003535 Prasinoderma coloniale HOM05D005700 ORTHO05D007035 3.1e-30 136.7 186 38.7
Glyma.02G164300 Glycine max HOM05D005700 ORTHO05D007035 4.0e-30 136.3 97 70.1
Sabra08G0020300 Salix brachista HOM05D000437 ORTHO05D000324 9.0e-30 135.2 99 66.7
arahy.Tifrunner.gnm1.ann1.D7GKH1 Arachis hypogaea HOM05D005700 ORTHO05D007035 4.5e-29 132.9 97 69.1
Nitab4.5_0002692g0080 Nicotiana tabacum HOM05D005700 ORTHO05D007035 4.5e-29 132.9 153 51.6
CSS0017585 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 7.6e-29 132.1 169 46.2
CSS0044078 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 1.3e-28 131.3 143 53.1
CsaV3_2G032730 Cucumis sativus L. HOM05D005700 ORTHO05D007035 3.2e-27 126.7 97 62.9
AUR62029215 Chenopodium quinoa HOM05D005700 ORTHO05D007035 1.2e-26 124.8 197 43.1
FAN10G1117 Fragaria x ananassa HOM05D005700 ORTHO05D007035 2.1e-26 124.0 127 52.8
PRCOL_00001490 Prasinoderma coloniale HOM05D005700 ORTHO05D007035 2.1e-26 124.0 192 38.5
AUR62022764 Chenopodium quinoa HOM05D005700 ORTHO05D007035 3.5e-26 123.2 197 41.6
MCO14G381 Micromonas commoda HOM05D005700 ORTHO05D007035 4.3e-24 116.3 190 39.5
BcaB01g05899 Brassica carinata HOM05D005700 ORTHO05D007035 5.6e-24 115.9 99 60.6
SEGI_13772 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 1.1e-22 111.7 90 62.2
unitig_749.g13568 Utricularia gibba HOM05D005700 ORTHO05D007035 2.4e-22 110.5 111 53.2
Hma1.2p1_1040F.1_g250960 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 1.0e-20 105.1 124 51.6
MBI11_g23276_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 1.3e-20 104.8 62 93.5
Os03g0146500 Oryza sativa ssp. japonica HOM05D005700 ORTHO05D007035 4.9e-20 102.8 61 77.0
SEGI_20571 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 8.2e-15 85.5 85 48.2
A03p60540 Brassica napus HOM05D006909 ORTHO05D008682 1.7e-12 77.8 191 26.7
TPR.G7611 Trifolium pratense HOM05D001538 ORTHO05D000007 2.9e-12 77.0 110 45.5
A03p01690 Brassica napus HOM05D005700 ORTHO05D007035 5.0e-12 76.3 59 62.7
BraA03t09544Z Brassica rapa HOM05D005700 ORTHO05D007035 5.0e-12 76.3 64 60.9
Sp7g28990 Schrenkiella parvula HOM05D006909 ORTHO05D008682 6.5e-12 75.9 194 27.3
Thhalv10026012m.g Eutrema salsugineum HOM05D006909 ORTHO05D008682 1.1e-11 75.1 194 26.3
Mapoly0080s0075 Marchantia polymorpha HOM05D006909 ORTHO05D008682 1.4e-11 74.7 159 30.2
BcaNung01544 Brassica carinata HOM05D006909 ORTHO05D008682 5.5e-11 72.8 230 24.8
AL7G20960 Arabidopsis lyrata HOM05D006909 ORTHO05D008682 1.2e-10 71.6 191 26.2
Carub.0007s0942 Capsella rubella HOM05D006909 ORTHO05D008682 1.6e-10 71.2 186 26.3
Lj5g0027238 Lotus japonicus HOM05D006909 ORTHO05D008682 1.6e-10 71.2 159 26.4
C07p58450 Brassica napus HOM05D006909 ORTHO05D008682 4.6e-10 69.7 157 26.8
BraA03t15093Z Brassica rapa HOM05D006909 ORTHO05D008682 4.6e-10 69.7 157 26.8
AT4G31115 Arabidopsis thaliana HOM05D006909 ORTHO05D008682 6.1e-10 69.3 186 25.8
CBR_g8618 Chara braunii HOM05D006909 ORTHO05D008682 6.1e-10 69.3 162 27.2
SEGI_25566 Sequoiadendron giganteum HOM05D006909 ORTHO05D008682 6.1e-10 69.3 195 24.6
BcaNung02722 Brassica carinata HOM05D006909 ORTHO05D008682 7.9e-10 68.9 156 26.9
BolC7t46299H Brassica oleracea HOM05D006909 ORTHO05D008682 7.9e-10 68.9 156 26.9
Zm00001eb313560 Zea mays HOM05D005700 ORTHO05D007035 7.9e-10 68.9 74 47.3
HanXRQChr06g0174091 Helianthus annuus HOM05D006909 ORTHO05D008682 1.8e-09 67.8 206 23.8
arahy.Tifrunner.gnm1.ann1.PLH1MA Arachis hypogaea HOM05D005700 ORTHO05D007035 3.9e-09 66.6 58 60.3
ATR0626G002 Amborella trichopoda HOM05D006909 ORTHO05D008682 5.1e-09 66.2 182 23.1
Aqoxy7G02568 Aquilegia oxysepala HOM05D006909 ORTHO05D008682 5.1e-09 66.2 191 24.1
Aa31LG2G19230 Aethionema arabicum HOM05D006909 ORTHO05D008682 6.7e-09 65.9 251 23.5
AagrBONN_evm.TU.Sc2ySwM_228.2691 Anthoceros agrestis HOM05D002736 ORTHO05D003882 6.7e-09 65.9 189 24.9
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 6.7e-09 65.9 157 24.2
CARHR239020 Cardamine hirsuta HOM05D006909 ORTHO05D008682 8.8e-09 65.5 218 22.9
Zm00001eb006030 Zea mays HOM05D005700 ORTHO05D007035 8.8e-09 65.5 61 55.7
Actinidia25726 Actinidia chinensis HOM05D006909 ORTHO05D008682 1.1e-08 65.1 158 25.3
THA.LOC104803576 Tarenaya hassleriana HOM05D006909 ORTHO05D008682 1.5e-08 64.7 194 24.2
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 1.9e-08 64.3 185 22.2
PSO063G6267 Papaver somniferum HOM05D006909 ORTHO05D008682 1.9e-08 64.3 157 25.5
Oeu027782.1 Olea europaea HOM05D006909 ORTHO05D008682 2.5e-08 63.9 209 26.3
PSO170G1397 Papaver somniferum HOM05D006909 ORTHO05D008682 2.5e-08 63.9 157 25.5
Potri.005G179800 Populus trichocarpa HOM05D006909 ORTHO05D008682 2.5e-08 63.9 214 23.4
HPP92_015794 Vanilla planifolia HOM05D006909 ORTHO05D008682 2.5e-08 63.9 157 23.6
Ciclev10009318m.g Citrus clementina HOM05D006909 ORTHO05D008682 4.3e-08 63.2 156 23.7
DCAR_000695 Daucus carota HOM05D006909 ORTHO05D008682 4.3e-08 63.2 158 25.9
BcaB01g05900 Brassica carinata HOM05D005700 ORTHO05D007035 5.7e-08 62.8 52 59.6
Glyma.17G200700 Glycine max HOM05D006909 ORTHO05D008682 5.7e-08 62.8 192 25.0
Manes.02G165700 Manihot esculenta HOM05D006909 ORTHO05D008682 5.7e-08 62.8 206 21.8
Nitab4.5_0004102g0010 Nicotiana tabacum HOM05D006909 ORTHO05D008682 5.7e-08 62.8 206 23.8
Os08g0521800 Oryza sativa ssp. japonica HOM05D006909 ORTHO05D008682 5.7e-08 62.8 160 24.4
PGSC0003DMG402029598 Solanum tuberosum HOM05D006909 ORTHO05D008682 5.7e-08 62.8 201 23.4
Nitab4.5_0004792g0040 Nicotiana tabacum HOM05D006909 ORTHO05D008682 1.3e-07 61.6 201 24.4
RcHm_v2.0_Chr4g0410411 Rosa chinensis HOM05D006909 ORTHO05D008682 1.3e-07 61.6 183 25.7
HPP92_015785 Vanilla planifolia HOM05D006909 ORTHO05D008682 1.7e-07 61.2 157 22.9
GSVIVG01035598001 Vitis vinifera HOM05D006909 ORTHO05D008682 1.7e-07 61.2 158 24.7
Phvul.001G088800 Phaseolus vulgaris HOM05D006909 ORTHO05D008682 2.2e-07 60.8 157 24.2
Sopen08g023090 Solanum pennellii HOM05D006909 ORTHO05D008682 2.2e-07 60.8 206 24.3
Lj8A418T18 Lonicera japonica HOM05D006909 ORTHO05D008682 2.8e-07 60.5 164 24.4
Solyc08g074450.3 Solanum lycopersicum HOM05D006909 ORTHO05D008682 2.8e-07 60.5 206 23.8
Gohir.A05G066300 Gossypium hirsutum HOM05D006909 ORTHO05D008682 3.7e-07 60.1 150 28.0
MCO03G547 Micromonas commoda HOM05D005700 ORTHO05D007035 3.7e-07 60.1 172 30.8
Zm00001eb035450 Zea mays HOM05D006909 ORTHO05D008682 3.7e-07 60.1 191 24.6
Gorai.009G069700 Gossypium raimondii HOM05D006909 ORTHO05D008682 4.8e-07 59.7 160 25.6
Atru.chr7.2714 Acer truncatum HOM05D006909 ORTHO05D008682 6.3e-07 59.3 184 24.5
QL12p024608 Quercus lobata HOM05D006909 ORTHO05D008682 1.1e-06 58.5 158 23.4
Thecc.09G001700 Theobroma cacao HOM05D006909 ORTHO05D008682 1.1e-06 58.5 158 24.7
Glyma.14G132000 Glycine max HOM05D006909 ORTHO05D008682 1.4e-06 58.2 157 24.2
Lj8A414G13 Lonicera japonica HOM05D006909 ORTHO05D008682 2.4e-06 57.4 184 23.4


User provided reference genes

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