Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1582.0 812 100.0
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1439.1 798 91.2
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1430.2 801 90.9
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1401.0 800 88.8
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1396.7 799 87.6
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1393.3 799 88.1
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1384.4 800 87.6
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1383.6 800 87.9
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1380.9 799 87.5
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1379.4 799 87.0
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1377.5 799 87.1
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1377.1 799 86.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1377.1 800 86.4
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1373.6 799 87.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1373.6 799 86.7
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1373.2 799 87.2
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1371.3 799 86.7
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1370.5 800 86.0
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1369.4 799 86.5
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1367.1 799 86.5
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1366.3 799 87.1
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1362.4 809 85.5
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1360.9 799 85.9
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1360.9 799 85.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1357.8 799 85.5
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1357.4 799 85.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1357.0 799 86.7
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1355.5 800 85.0
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1354.7 807 85.4
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1354.7 799 85.6
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1354.3 799 85.6
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1354.3 799 86.0
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1351.7 799 86.4
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1351.7 799 85.2
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1351.7 799 85.2
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1351.3 799 85.2
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1350.1 799 85.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1350.1 799 84.7
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1349.3 799 85.1
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1349.0 801 85.4
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1348.2 799 84.7
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1347.8 799 85.2
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1347.8 802 84.3
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1347.0 799 85.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1345.5 799 85.0
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1344.7 799 84.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1342.8 799 85.0
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1342.4 799 85.0
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1342.4 799 85.0
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1341.3 797 84.4
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1340.9 799 84.6
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1340.5 799 84.7
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1340.1 800 84.5
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1339.7 799 83.7
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1339.7 799 84.0
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1337.4 799 84.0
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1336.2 799 83.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1333.9 799 83.7
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1333.2 799 84.4
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1333.2 844 81.2
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1332.8 799 84.5
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1332.8 799 84.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1332.4 800 83.6
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1330.1 800 83.4
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1330.1 799 84.1
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1329.7 799 83.5
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1329.7 799 83.5
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1329.7 799 83.5
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1329.3 800 83.6
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1329.3 799 83.4
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1329.3 799 83.4
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1328.9 799 84.4
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1328.2 799 84.2
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1327.8 799 83.5
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1327.8 799 83.5
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1326.6 800 83.5
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1326.2 799 84.2
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1325.8 800 82.9
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1325.1 811 82.6
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1323.1 800 84.1
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1322.8 799 83.1
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1320.8 799 83.4
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1319.3 802 82.7
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1317.4 799 83.4
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1317.0 800 85.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1317.0 801 83.3
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1315.4 800 83.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1313.1 799 82.5
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1312.0 799 82.7
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1306.6 800 83.8
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1301.2 808 82.9
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1300.4 799 82.5
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1281.5 801 81.5
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1279.6 799 82.4
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1277.3 800 81.4
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1275.4 799 80.9
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1272.3 817 79.8
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1270.8 809 78.4
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1260.7 799 79.1
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1236.1 800 77.6
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1151.0 799 71.5
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1149.0 799 72.0
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1136.3 801 71.0
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1119.8 801 69.8
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1108.6 696 81.6
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 1.7e-311 1072.4 799 67.7
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 1.4e-310 1069.3 628 85.7
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 3.0e-308 1061.6 799 66.7
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 7.7e-304 1047.0 819 64.5
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 1.6e-280 969.5 575 84.0
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 2.5e-278 962.2 577 86.3
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.8e-274 948.7 598 82.3
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 9.8e-267 923.7 547 86.3
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.6e-240 835.1 827 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 4.2e-225 785.4 564 67.4
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 6.2e-213 745.0 602 67.8
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 4.3e-206 722.2 423 82.5
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 2.4e-204 716.5 421 82.7
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.5e-161 574.3 436 68.1
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 9.2e-148 528.5 293 85.0
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 5.9e-147 525.8 358 76.8
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.1e-123 447.6 378 60.6
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.2e-109 401.0 224 85.7
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 6.9e-103 379.4 224 80.8
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.1e-91 341.3 194 85.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 9.4e-60 236.1 167 75.4
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.3e-48 199.1 109 88.1
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 7.7e-46 189.9 113 75.2
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 7.2e-44 183.3 117 82.9
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 3.6e-43 181.0 144 69.4
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 5.0e-37 160.6 102 83.3
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.1e-36 159.5 108 79.6
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.2e-33 149.4 87 81.6
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.2e-30 139.4 96 76.0
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 2.8e-19 101.7 84 67.9
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.2e-19 100.5 109 48.6
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.1e-18 99.8 81 59.3
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 6.8e-18 97.1 51 86.3
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 8.9e-18 96.7 51 88.2
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.2e-17 96.3 51 88.2
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.1e-07 63.2 37 75.7


User provided reference genes

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