Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.2e-203 713.0 365 100.0
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 7.6e-134 481.1 309 77.7
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 2.7e-131 472.6 306 77.8
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 4.6e-131 471.9 306 76.8
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.3e-130 469.5 306 75.5
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 2.3e-130 469.5 308 76.9
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.9e-130 468.8 309 76.7
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 6.6e-130 468.0 306 77.1
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 8.6e-130 467.6 309 76.7
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 3.3e-129 465.7 306 75.8
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 5.6e-129 464.9 306 75.8
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.3e-129 464.5 306 75.5
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.6e-128 463.4 306 76.1
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 1.6e-128 463.4 309 76.1
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 1.6e-128 463.4 306 75.8
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.1e-128 463.0 306 75.2
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 2.8e-128 462.6 309 75.7
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.7e-128 461.8 306 75.2
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 8.1e-128 461.1 309 75.4
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 8.1e-128 461.1 309 75.7
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.4e-127 460.3 309 74.8
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 2.4e-127 459.5 306 75.5
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.0e-127 458.8 306 75.8
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 4.0e-127 458.8 306 74.2
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 4.0e-127 458.8 316 73.4
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 4.0e-127 458.8 309 74.4
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.2e-126 457.2 309 74.4
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-126 456.8 309 75.1
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.6e-126 456.1 309 75.1
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 4.4e-126 455.3 309 74.8
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 5.8e-126 454.9 309 74.8
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 5.8e-126 454.9 306 73.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 7.6e-126 454.5 307 73.6
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 7.6e-126 454.5 306 73.5
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 9.9e-126 454.1 306 74.2
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 9.9e-126 454.1 309 72.8
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 2.2e-125 453.0 307 73.3
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.2e-125 453.0 309 74.4
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 2.9e-125 452.6 309 75.4
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 3.8e-125 452.2 309 74.4
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 3.8e-125 452.2 306 75.2
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 4.9e-125 451.8 309 74.4
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 4.9e-125 451.8 306 72.9
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 6.4e-125 451.4 306 74.2
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 6.4e-125 451.4 306 75.2
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 6.4e-125 451.4 306 73.5
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 8.4e-125 451.1 306 72.9
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.1e-124 450.7 309 74.4
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.4e-124 450.3 309 74.4
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.4e-124 449.5 309 74.4
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.4e-124 449.5 306 73.9
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.2e-124 449.1 305 74.4
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 4.2e-124 448.7 306 72.2
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.3e-124 447.6 306 73.5
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 9.3e-124 447.6 309 72.5
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.2e-123 447.2 306 71.9
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.6e-123 446.8 305 74.1
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.6e-123 446.8 309 73.5
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.6e-123 446.8 306 74.2
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 2.1e-123 446.4 309 72.5
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.1e-123 446.4 302 74.8
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.1e-123 446.4 305 73.8
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 2.1e-123 446.4 309 74.4
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.1e-123 446.4 309 72.2
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.1e-123 446.4 309 72.8
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 4.6e-123 445.3 309 72.5
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 4.6e-123 445.3 309 73.1
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 4.6e-123 445.3 306 71.9
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 1.7e-122 443.4 309 73.5
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 2.3e-122 443.0 309 74.1
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 3.0e-122 442.6 305 73.1
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 6.6e-122 441.4 309 73.1
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.1e-121 440.7 305 72.1
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.9e-121 439.9 306 71.9
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 2.5e-121 439.5 309 72.8
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 4.3e-121 438.7 309 73.1
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 3.6e-120 435.6 309 70.9
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.1e-119 434.1 309 70.9
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.1e-119 434.1 309 71.2
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.4e-119 433.7 308 71.1
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 3.1e-119 432.6 308 71.1
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 3.1e-119 432.6 308 68.5
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 4.0e-119 432.2 308 70.1
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 4.0e-119 432.2 303 70.6
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 5.3e-119 431.8 308 70.1
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 5.3e-119 431.8 310 68.7
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 6.9e-119 431.4 305 70.5
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 9.0e-119 431.0 308 71.1
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.2e-118 430.6 306 70.9
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 1.5e-118 430.3 308 70.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.5e-118 430.3 308 70.8
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.6e-118 429.5 308 69.8
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 2.6e-118 429.5 306 70.3
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 3.4e-118 429.1 309 70.9
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 5.8e-118 428.3 306 69.9
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 9.9e-118 427.6 308 70.5
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 9.9e-118 427.6 308 70.1
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 9.9e-118 427.6 311 69.8
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.3e-117 427.2 308 69.8
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.3e-117 427.2 306 71.6
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.9e-117 426.0 309 69.6
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 3.8e-117 425.6 308 69.8
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.1e-116 424.1 326 67.2
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.4e-116 422.9 305 69.5
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.4e-116 422.9 338 66.0
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 5.4e-116 421.8 308 69.5
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 9.3e-116 421.0 307 68.4
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 7.9e-115 417.9 346 63.6
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.7e-114 416.8 308 68.8
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.7e-114 416.8 306 69.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 6.6e-114 414.8 322 66.8
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 6.6e-114 414.8 297 69.4
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 4.3e-113 412.1 293 70.0
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.8e-111 406.8 312 66.0
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.2e-110 404.1 309 65.4
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.8e-110 401.7 309 65.7
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.2e-109 399.8 309 64.7
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.2e-107 394.0 254 77.6
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 7.9e-107 391.3 312 66.7
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.8e-106 390.2 266 72.2
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 8.7e-106 387.9 309 65.4
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 5.6e-105 385.2 308 63.6
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 2.8e-104 382.9 254 75.6
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 2.0e-102 376.7 346 57.2
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.2e-101 373.2 306 64.1
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.8e-98 363.6 306 62.7
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 6.7e-98 361.7 304 62.5
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 1.1e-95 354.4 295 59.0
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 9.7e-89 331.3 213 77.0
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.4e-86 322.8 213 73.7
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.2e-85 320.1 514 40.1
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.9e-85 319.7 306 56.5
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 6.5e-85 318.5 225 71.6
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 4.6e-83 312.4 205 77.6
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 2.7e-75 286.6 252 62.7
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.1e-75 285.4 252 59.1
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 2.6e-73 280.0 309 47.9
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 4.4e-73 279.3 251 61.0
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 8.5e-61 238.4 160 77.5
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 2.0e-49 200.7 304 40.1
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 7.5e-49 198.7 304 38.2
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 9.2e-47 191.8 111 82.9
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.0e-41 174.1 154 57.1
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 2.3e-34 150.6 101 70.3
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 2.3e-34 150.6 205 47.3
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 8.3e-32 142.1 84 78.6
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 3.7e-24 116.7 175 38.9
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.2e-23 113.6 84 65.5
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 2.7e-22 110.5 234 32.5
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.6e-19 101.3 82 59.8
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.1e-18 98.6 117 47.9
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.4e-18 98.2 83 66.3
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.4e-18 98.2 86 62.8
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 1.1e-15 88.6 70 61.4
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 1.3e-13 81.6 63 63.5
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 6.6e-13 79.3 121 41.3
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 5.4e-07 59.7 53 56.6
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 6.0e-06 56.2 36 72.2


User provided reference genes

Program Settings