Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g09451_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-30 136.0 70 100.0
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.4e-17 92.4 122 50.0
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.8e-13 78.2 43 93.0
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.4e-12 75.9 43 90.7
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.4e-12 75.1 42 90.5
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 1.6e-11 72.4 122 41.0
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 3.5e-11 71.2 104 43.3
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 3.5e-11 71.2 122 40.2
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 4.5e-11 70.9 122 40.2
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 7.7e-11 70.1 122 40.2
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.0e-10 69.7 122 37.7
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 1.3e-10 69.3 122 38.5
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 1.3e-10 69.3 122 38.5
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.3e-10 69.3 38 92.1
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 1.7e-10 68.9 122 39.3
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.7e-10 68.9 38 92.1
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 1.7e-10 68.9 122 39.3
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.2e-10 68.6 117 39.3
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 2.2e-10 68.6 117 39.3
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.8e-10 67.8 116 38.8
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 5.0e-10 67.4 117 38.5
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 5.0e-10 67.4 117 39.3
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 5.0e-10 67.4 100 42.0
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 6.5e-10 67.0 122 39.3
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 6.5e-10 67.0 122 39.3
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 8.5e-10 66.6 122 38.5
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 8.5e-10 66.6 122 38.5
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 1.1e-09 66.2 122 36.9
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 1.1e-09 66.2 122 38.5
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.1e-09 66.2 122 37.7
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-09 66.2 41 82.9
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 1.5e-09 65.9 117 38.5
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 1.9e-09 65.5 117 38.5
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.9e-09 65.5 122 36.9
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.9e-09 65.5 122 36.9
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 1.9e-09 65.5 122 37.7
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 2.5e-09 65.1 122 36.9
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 2.5e-09 65.1 122 37.7
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 3.2e-09 64.7 122 36.1
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 3.2e-09 64.7 117 36.8
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.2e-09 64.3 117 36.8
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.2e-09 64.3 117 36.8
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 4.2e-09 64.3 122 36.9
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 5.5e-09 63.9 122 36.9
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 5.5e-09 63.9 122 36.9
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 5.5e-09 63.9 117 37.6
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 5.5e-09 63.9 117 37.6
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 5.5e-09 63.9 117 35.9
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 5.5e-09 63.9 122 36.9
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 5.5e-09 63.9 122 36.9
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 7.2e-09 63.5 118 38.1
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 7.2e-09 63.5 122 36.1
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 9.4e-09 63.2 122 37.7
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 9.4e-09 63.2 122 36.9
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 9.4e-09 63.2 122 36.9
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 1.2e-08 62.8 119 36.1
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.2e-08 62.8 117 35.9
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 1.2e-08 62.8 122 36.1
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 2.1e-08 62.0 122 36.1
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 2.1e-08 62.0 122 36.1
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.1e-08 62.0 117 36.8
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.1e-08 62.0 117 36.8
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 2.7e-08 61.6 122 36.1
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 2.7e-08 61.6 122 36.1
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 2.7e-08 61.6 122 36.1
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 2.7e-08 61.6 122 36.1
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.7e-08 61.6 122 36.1
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 2.7e-08 61.6 122 36.9
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 2.7e-08 61.6 122 36.9
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 2.7e-08 61.6 122 36.1
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 4.7e-08 60.8 121 35.5
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 4.7e-08 60.8 122 35.2
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 4.7e-08 60.8 122 35.2
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 4.7e-08 60.8 122 35.2
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 6.1e-08 60.5 122 35.2
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 6.1e-08 60.5 122 35.2
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 6.1e-08 60.5 122 35.2
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 6.1e-08 60.5 122 36.1
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 6.1e-08 60.5 122 36.1
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 8.0e-08 60.1 122 34.4
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 8.0e-08 60.1 122 34.4
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 8.0e-08 60.1 117 36.8
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 8.0e-08 60.1 122 37.7
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 8.0e-08 60.1 122 34.4
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 1.0e-07 59.7 122 36.1
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 1.0e-07 59.7 122 36.9
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.0e-07 59.7 122 35.2
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.0e-07 59.7 122 35.2
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 1.4e-07 59.3 117 35.0
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.4e-07 59.3 122 36.1
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.8e-07 58.9 122 35.2
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 1.8e-07 58.9 122 33.6
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 3.0e-07 58.2 122 34.4
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 4.0e-07 57.8 122 34.4
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 4.0e-07 57.8 124 34.7
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 4.0e-07 57.8 122 34.4
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 4.0e-07 57.8 122 34.4
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 4.0e-07 57.8 122 35.2
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 5.2e-07 57.4 122 34.4
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.2e-07 57.4 125 34.4
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 6.7e-07 57.0 41 65.9
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 8.8e-07 56.6 41 68.3
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 8.8e-07 56.6 122 34.4
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 8.8e-07 56.6 119 32.8
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 1.2e-06 56.2 41 68.3
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.2e-06 56.2 122 34.4
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 1.2e-06 56.2 124 32.3
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 1.2e-06 56.2 122 34.4
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 1.5e-06 55.8 122 35.2
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 2.6e-06 55.1 122 32.8
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 4.4e-06 54.3 122 31.1
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 7.5e-06 53.5 122 31.1
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 9.7e-06 53.1 41 63.4


User provided reference genes

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