Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 0.0e+00 1120.5 561 100.0
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.6e-212 741.9 545 68.4
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.9e-205 719.5 558 64.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.3e-198 696.8 499 68.5
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 6.7e-198 694.5 560 62.9
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.5e-197 692.6 561 62.2
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 5.7e-197 691.4 564 63.1
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 3.1e-195 685.6 538 64.9
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 3.4e-194 682.2 549 63.8
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.0e-193 680.6 547 63.8
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 6.5e-193 677.9 562 60.7
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 7.2e-192 674.5 562 63.2
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.6e-191 672.2 495 68.9
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 7.9e-191 671.0 524 63.9
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.3e-190 670.2 486 68.3
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.3e-190 669.5 523 64.1
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.9e-190 668.7 523 63.9
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 3.9e-190 668.7 528 63.4
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.1e-189 667.2 519 64.4
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.1e-189 667.2 523 63.7
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.3e-189 665.6 527 63.2
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 4.3e-189 665.2 486 67.7
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 7.4e-189 664.5 485 67.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 9.7e-189 664.1 528 63.6
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 2.8e-188 662.5 527 62.8
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.7e-188 662.1 522 63.0
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.8e-188 661.8 560 60.2
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.4e-187 660.2 524 64.5
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.8e-187 659.8 528 61.9
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 5.3e-187 658.3 499 64.7
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.2e-186 657.1 485 67.0
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.0e-185 654.1 547 60.9
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.3e-185 653.7 549 61.9
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 5.0e-185 651.7 527 62.2
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.5e-184 649.4 497 64.2
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 4.2e-184 648.7 471 66.5
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.7e-183 646.0 588 57.3
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.6e-183 645.6 525 61.9
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 6.1e-183 644.8 490 62.9
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 7.9e-183 644.4 491 62.3
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 1.0e-182 644.0 490 62.7
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 1.8e-182 643.3 526 61.6
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-181 640.6 529 60.5
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-181 640.6 520 61.2
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.4e-181 637.9 525 61.3
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 2.8e-180 636.0 525 61.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 3.7e-180 635.6 485 64.7
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 6.3e-180 634.8 527 60.2
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 8.2e-180 634.4 521 60.3
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.8e-179 633.3 538 59.5
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 9.1e-179 630.9 524 60.3
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.5e-178 630.2 501 61.5
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.6e-178 629.4 543 58.9
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 2.6e-178 629.4 485 63.1
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 3.8e-177 625.5 561 58.6
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 8.5e-177 624.4 503 61.4
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.5e-177 624.4 523 58.9
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.1e-176 624.0 491 62.9
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.6e-175 620.2 492 62.8
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.6e-175 619.0 552 56.5
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 6.1e-175 618.2 523 60.4
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 7.9e-175 617.8 508 58.7
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 5.2e-174 615.1 549 57.7
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-173 614.0 479 63.9
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.1e-173 614.0 490 62.2
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 2.6e-173 612.8 518 59.3
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 2.6e-173 612.8 539 58.8
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 4.4e-173 612.1 516 58.5
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 4.4e-173 612.1 517 58.6
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.6e-170 603.6 492 61.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.0e-170 603.2 492 62.2
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 7.7e-170 601.3 524 57.6
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.2e-169 599.7 528 57.4
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 7.2e-168 594.7 487 62.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.7e-167 592.0 495 61.2
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.4e-166 590.5 557 54.6
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.4e-166 590.5 614 51.6
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 2.2e-164 583.2 547 56.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.2e-164 583.2 513 58.9
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.2e-164 583.2 496 60.9
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.2e-164 583.2 525 56.6
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.8e-164 582.8 495 59.0
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 6.3e-164 581.6 573 53.1
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.1e-163 579.3 418 67.0
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 5.0e-161 572.0 513 56.9
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 4.7e-159 565.5 488 58.8
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.0e-159 564.7 495 59.0
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.0e-158 562.8 523 54.5
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.0e-157 560.1 545 53.6
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.7e-157 558.5 522 53.8
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.7e-156 557.0 519 55.9
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.3e-156 554.7 508 58.7
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 4.5e-154 548.9 453 59.4
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-152 543.5 491 54.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 5.2e-150 535.4 474 56.5
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.2e-149 534.3 492 55.3
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 2.6e-149 533.1 525 51.8
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 5.4e-147 525.4 383 67.4
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-144 517.3 502 51.2
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 5.6e-144 515.4 531 51.8
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 4.7e-143 512.3 503 53.3
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 2.9e-140 503.1 573 46.4
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.4e-140 501.9 416 64.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 8.3e-140 501.5 531 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 5.4e-139 498.8 511 49.7
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-136 490.7 488 52.0
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.5e-136 490.7 524 49.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.3e-136 488.4 505 53.7
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 8.9e-134 481.5 426 57.3
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 3.4e-133 479.6 528 52.1
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 4.4e-133 479.2 491 51.9
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.1e-131 474.6 456 54.6
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 5.4e-131 472.2 481 50.5
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.6e-130 470.7 394 58.9
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.1e-126 458.0 394 55.8
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.4e-126 457.6 330 66.7
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.9e-124 449.9 460 51.7
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.9e-120 437.2 394 59.1
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 7.3e-120 435.3 297 71.7
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.2e-115 418.3 342 59.9
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.7e-113 414.1 326 60.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.5e-112 411.0 340 60.3
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 9.6e-112 408.3 456 50.9
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.1e-111 407.1 654 38.4
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 4.9e-108 396.0 333 58.9
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 3.2e-107 393.3 331 59.8
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 8.1e-103 378.6 341 56.3
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 2.4e-102 377.1 412 50.0
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.2e-91 339.7 309 57.3
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.1e-90 337.4 454 43.0
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.3e-89 334.0 277 58.5
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.5e-84 315.8 225 64.4
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.8e-79 300.4 216 63.0
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.4e-78 298.1 345 47.2
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 9.3e-75 285.4 629 32.8
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 5.1e-65 253.1 489 35.0
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 8.8e-65 252.3 259 52.1
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.1e-59 235.3 154 74.0
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.2e-59 233.8 217 58.1
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.5e-59 233.0 217 57.6
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.6e-58 230.3 189 64.0
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-56 225.3 152 72.4
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.4e-54 218.4 168 61.9
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 2.4e-54 217.6 205 56.1
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-52 211.8 195 48.7
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 7.2e-51 206.1 158 64.6
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.4e-49 201.8 144 65.3
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.2e-43 180.3 181 53.6
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.8e-39 167.5 118 66.1
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.7e-39 167.2 171 43.3
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 7.0e-38 162.9 185 48.1
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-36 158.7 201 41.8
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-35 154.5 128 59.4
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.8e-29 132.9 138 51.4
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.7e-28 131.7 105 59.0
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 2.3e-28 131.3 186 43.5
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.7e-23 115.2 76 68.4
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-19 102.1 120 40.0
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.0e-13 81.6 66 53.0
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 4.7e-10 70.5 72 45.8
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 6.2e-10 70.1 72 50.0
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 3.1e-09 67.8 53 66.0


User provided reference genes

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