Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 2588.9 1325 100.0
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1588.9 1331 63.9
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1399.4 1339 57.9
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1379.8 1342 57.2
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1375.5 1340 57.9
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1322.8 1333 55.4
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1277.3 1318 54.2
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1276.2 1218 57.2
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 0.0e+00 1273.8 1293 53.8
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1266.9 1337 53.3
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1264.2 1335 52.4
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1263.1 1335 52.1
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1247.6 1314 52.4
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1247.3 1314 52.4
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1246.9 1320 51.5
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1246.5 1419 50.5
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1246.1 1334 53.0
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1242.6 1309 52.0
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1236.5 1318 51.7
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1228.4 1314 52.1
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1222.6 1320 51.1
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1221.5 1314 51.7
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1218.4 1316 51.4
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1213.7 1329 51.9
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1213.0 1315 50.8
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1203.0 1314 50.9
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1186.8 1308 51.1
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1182.5 1305 50.6
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1180.6 1313 50.3
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1179.1 1327 49.8
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1177.2 1321 50.9
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1172.9 1310 50.5
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1168.7 1313 50.0
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1165.6 1307 50.1
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1162.9 1311 49.8
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1154.4 1313 49.6
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1146.3 1312 49.5
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1144.0 1188 52.9
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1139.4 1182 53.6
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1123.6 1309 48.5
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1122.5 1313 49.2
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1115.5 1335 47.9
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1103.2 1314 47.1
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1099.0 1169 52.4
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1098.6 1315 47.5
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1098.2 1334 47.4
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1096.6 1315 46.9
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1091.6 1314 48.1
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1091.6 1326 47.7
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1090.5 1352 48.2
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1081.6 1321 46.6
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1080.5 1322 46.2
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1075.8 1184 51.4
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 1.8e-311 1072.8 1330 47.4
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 3.4e-309 1065.4 1326 47.9
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 5.1e-305 1051.6 1314 45.6
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 5.1e-305 1051.6 1315 45.6
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 3.3e-304 1048.9 1347 46.6
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 4.3e-304 1048.5 1367 45.2
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 8.1e-303 1044.3 1320 45.5
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 9.9e-301 1037.3 1315 44.9
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 4.2e-299 1031.9 1318 45.8
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 5.4e-299 1031.6 1310 47.0
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 1.2e-298 1030.4 1320 45.4
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.8e-297 1026.5 1318 45.5
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 5.1e-297 1025.0 1322 44.9
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 1.1e-296 1023.8 1054 53.9
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 1.9e-296 1023.1 1321 44.1
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 1.3e-295 1020.4 1070 52.9
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 2.6e-293 1012.7 1161 50.0
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 2.2e-292 1009.6 1320 43.9
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 2.2e-292 1009.6 1320 43.9
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 4.2e-291 1005.4 1320 43.6
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 7.1e-291 1004.6 1319 43.3
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 3.5e-290 1002.3 1180 48.6
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 4.5e-285 985.3 1160 47.8
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 2.9e-284 982.6 1285 44.7
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 6.3e-279 964.9 1316 43.4
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 1.4e-275 953.7 1332 42.9
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 3.3e-272 942.6 1181 45.9
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 4.7e-266 922.2 1315 42.0
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 5.9e-261 905.2 1248 43.6
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 8.5e-260 901.4 948 53.4
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 4.8e-255 885.6 1278 42.2
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 1.8e-249 867.1 870 54.5
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.7e-245 853.2 1016 49.0
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 4.0e-241 839.3 1021 46.7
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 3.7e-239 832.8 750 59.2
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 3.5e-237 826.2 1246 42.2
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.2e-229 801.2 1153 41.4
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 1.7e-228 797.3 1067 45.2
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 3.8e-228 796.2 1322 38.4
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.3e-211 740.0 844 49.4
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.6e-194 684.5 800 46.4
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 4.6e-189 666.4 761 49.5
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 2.2e-175 620.9 1256 35.0
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 7.9e-173 612.5 1064 38.3
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 9.1e-153 545.8 683 46.1
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.6e-152 544.3 708 45.8
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.1e-150 538.9 620 49.0
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 2.6e-136 491.1 496 56.5
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 8.8e-132 476.1 653 42.7
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 3.7e-130 470.7 516 52.7
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 5.9e-112 410.2 514 47.9
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 1.2e-107 396.0 1306 27.6
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 2.3e-103 381.7 433 52.7
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.6e-101 375.6 508 44.5
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 6.2e-101 373.6 1293 26.6
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.5e-94 352.4 387 47.0
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.8e-93 348.2 379 49.1
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 1.2e-85 322.8 602 37.4
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.8e-84 318.9 351 48.1
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 2.2e-82 312.0 393 46.3
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 9.0e-52 210.3 285 43.5
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.6e-35 155.6 186 50.0
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 5.0e-34 151.4 139 58.3
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 9.4e-33 147.1 167 47.3
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 3.0e-31 142.1 190 44.7
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 5.0e-26 124.8 151 44.4
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 1.9e-25 122.9 132 49.2
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 3.7e-21 108.6 108 52.8
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 1.1e-20 107.1 129 42.6
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 1.1e-20 107.1 210 31.4
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 9.1e-20 104.0 120 46.7
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.2e-19 103.6 109 52.3
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 3.8e-18 98.6 122 46.7
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 7.2e-17 94.4 481 22.2
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 7.5e-14 84.3 118 41.5
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 6.3e-13 81.3 63 66.7
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 3.5e-11 75.5 70 50.0
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.3e-10 73.6 66 56.1
Pp3c1_19010 Physcomitrium patens HOM05D005651 ORTHO05D006877 3.2e-09 68.9 114 39.5


User provided reference genes

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