Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.4e-145 518.8 265 100.0
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 4.4e-99 365.2 274 71.2
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 5.4e-97 358.2 271 72.0
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 5.4e-97 358.2 271 72.0
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-90 336.3 273 67.4
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-90 336.3 273 67.4
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.8e-89 333.2 272 67.3
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.6e-88 330.1 272 70.2
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.6e-87 324.3 269 66.9
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 5.6e-86 321.6 264 67.4
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 5.6e-86 321.6 264 67.4
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 5.6e-86 321.6 264 67.4
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 5.6e-86 321.6 264 67.4
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 8.0e-85 317.8 264 66.7
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.5e-83 313.5 272 64.0
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 1.5e-83 313.5 239 69.9
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 2.0e-83 313.2 259 66.0
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 4.4e-83 312.0 276 61.2
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 4.4e-83 312.0 276 61.2
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.3e-82 310.5 260 66.9
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 2.2e-82 309.7 275 62.9
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 2.2e-82 309.7 254 66.9
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-81 307.4 274 63.5
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-81 307.4 274 63.5
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-81 307.4 274 63.5
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-81 307.4 274 63.5
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 2.4e-81 306.2 276 63.8
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 6.0e-80 301.6 314 56.4
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 7.8e-80 301.2 262 63.0
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 1.3e-79 300.4 276 60.9
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.0e-79 299.3 236 67.8
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 6.6e-79 298.1 279 60.2
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 6.6e-79 298.1 279 60.2
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 6.6e-79 298.1 279 60.2
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 6.6e-79 298.1 279 60.2
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 6.6e-79 298.1 279 60.2
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 2.5e-78 296.2 260 63.5
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-78 295.8 279 59.5
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-78 295.8 279 59.5
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-78 295.8 279 59.5
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-78 295.8 279 59.5
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-78 295.8 279 59.5
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-78 295.8 279 59.5
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 4.3e-78 295.4 279 59.5
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 4.3e-78 295.4 279 59.5
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 5.6e-78 295.0 281 59.1
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 2.8e-77 292.7 279 59.9
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 8.3e-74 281.2 260 62.3
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.4e-73 278.5 273 57.5
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.9e-70 270.0 274 58.0
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-68 263.8 242 62.0
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 2.0e-67 260.0 207 66.7
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 3.5e-64 249.2 203 64.5
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 1.4e-57 227.3 194 62.9
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 4.6e-56 222.2 258 53.9
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.0e-55 221.1 203 57.6
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.0e-55 221.1 203 57.6
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.0e-55 221.1 203 57.6
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.0e-55 221.1 203 57.6
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.0e-55 221.1 203 57.6
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 4.8e-53 212.2 165 69.1
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 5.3e-52 208.8 205 54.1
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 9.0e-52 208.0 207 56.0
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 9.9e-51 204.5 170 67.1
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.4e-49 200.7 136 75.7
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.9e-49 200.3 208 53.4
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 5.4e-49 198.7 170 67.6
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 4.3e-46 189.1 170 64.7
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 1.6e-45 187.2 179 60.3
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 6.2e-45 185.3 230 49.1
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 1.8e-44 183.7 170 63.5
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 6.9e-44 181.8 136 69.9
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 6.9e-44 181.8 136 69.9
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 6.9e-44 181.8 136 69.9
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 2.6e-43 179.9 169 63.3
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.1e-41 174.5 138 72.5
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 2.4e-41 173.3 132 68.2
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-40 170.6 141 68.8
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 8.1e-37 158.3 243 38.7
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.4e-36 156.8 167 55.7
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 6.9e-36 155.2 134 64.2
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 9.0e-36 154.8 174 50.6
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.5e-35 154.1 169 51.5
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 2.9e-34 149.8 144 57.6
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 7.1e-33 145.2 109 66.1
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.5e-32 142.9 70 87.1
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 2.3e-31 140.2 255 36.1
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 1.9e-30 137.1 70 84.3
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 7.4e-30 135.2 228 42.1
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.1e-29 133.7 203 42.9
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 2.1e-29 133.7 107 66.4
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.4e-28 131.0 68 83.8
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.8e-28 130.6 69 81.2
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-27 127.9 114 63.2
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 3.4e-27 126.3 70 75.7
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.8e-27 125.6 63 87.3
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-26 124.8 119 59.7
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.5e-26 122.1 68 79.4
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 8.4e-26 121.7 76 72.4
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.5e-25 120.2 60 86.7
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.2e-24 117.9 76 69.7
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.7e-24 116.7 55 92.7
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.7e-24 116.7 55 92.7
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 6.1e-24 115.5 105 58.1
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 2.3e-23 113.6 206 42.7
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 3.0e-23 113.2 87 60.9
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.5e-22 110.9 57 87.7
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.5e-22 110.2 48 100.0
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 4.3e-22 109.4 74 79.7
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.3e-22 109.4 67 86.6
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-20 104.8 113 60.2
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.1e-20 103.2 67 79.1
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.0e-20 101.7 53 83.0
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.5e-19 99.4 170 44.7
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 5.9e-19 99.0 129 51.9
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 7.7e-19 98.6 91 61.5
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.3e-18 97.8 53 79.2
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 2.9e-18 96.7 45 88.9
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 3.8e-18 96.3 69 76.8
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 3.2e-17 93.2 67 71.6
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.5e-17 92.4 61 80.3
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 7.2e-17 92.0 44 88.6
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-16 91.3 101 53.5
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-16 91.3 41 87.8
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.1e-16 90.5 41 85.4
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 8.8e-15 85.1 57 73.7
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-14 84.0 38 86.8
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 2.8e-13 80.1 69 60.9
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 2.4e-12 77.0 55 76.4
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 2.4e-12 77.0 45 68.9
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 2.0e-11 73.9 46 82.6
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 6.5e-10 68.9 81 54.3
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 1.1e-09 68.2 42 88.1
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.2e-09 66.6 40 80.0
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 9.4e-09 65.1 47 76.6
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-06 57.8 27 85.2
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.3e-06 56.6 37 73.0
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 4.4e-06 56.2 42 73.8
Psat5g168080 Pisum sativum HOM05D005034 ORTHO05D006234 7.4e-06 55.5 23 91.3


User provided reference genes

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