Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 5.2e-156 554.3 273 100.0
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.0e-90 337.4 235 69.8
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 5.5e-89 331.6 209 71.8
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 7.2e-89 331.3 225 69.3
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.8e-87 326.6 236 65.7
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 1.2e-86 323.9 225 66.2
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 1.5e-86 323.6 256 63.7
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.6e-86 322.8 218 68.3
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 4.4e-86 322.0 195 73.3
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 7.5e-86 321.2 244 62.7
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.7e-85 320.1 270 61.5
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 2.2e-85 319.7 266 60.2
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 3.7e-85 318.9 248 61.3
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 4.8e-85 318.5 238 64.3
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 2.4e-84 316.2 209 71.3
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 3.1e-84 315.8 200 73.0
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 3.1e-84 315.8 220 67.3
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 5.4e-84 315.1 209 70.8
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 5.4e-84 315.1 209 70.8
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 1.2e-83 313.9 190 75.8
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 2.0e-83 313.2 240 62.1
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 2.7e-83 312.8 208 69.2
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.7e-83 312.8 207 69.1
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 3.5e-83 312.4 252 61.5
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 4.5e-83 312.0 248 63.7
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 2.9e-82 309.3 231 65.4
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 3.8e-82 308.9 209 66.5
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 6.6e-82 308.1 220 65.5
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 8.6e-82 307.8 248 57.7
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 8.6e-82 307.8 219 66.7
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 1.1e-81 307.4 205 68.8
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 1.1e-81 307.4 211 66.8
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 2.5e-81 306.2 212 66.0
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 3.3e-81 305.8 211 66.4
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 7.2e-81 304.7 216 65.7
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 2.8e-80 302.8 211 65.4
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.7e-80 302.0 253 57.7
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.8e-79 300.1 209 68.9
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.2e-78 297.4 225 61.8
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 2.0e-78 296.6 214 65.4
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 2.6e-78 296.2 259 57.5
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 3.4e-78 295.8 225 60.9
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 5.7e-78 295.0 223 64.6
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 9.8e-78 294.3 198 68.7
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 2.2e-77 293.1 237 60.3
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 4.9e-77 292.0 208 63.9
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 4.9e-77 292.0 201 67.2
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 6.3e-77 291.6 235 60.4
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 8.3e-77 291.2 225 61.3
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 8.3e-77 291.2 206 65.5
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-76 290.8 217 62.7
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.4e-76 290.4 195 66.2
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-76 290.0 236 59.7
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 2.4e-76 289.7 197 66.0
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 2.4e-76 289.7 199 67.3
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 3.2e-76 289.3 206 67.0
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.1e-76 288.9 182 70.9
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 9.2e-76 287.7 241 59.3
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.6e-75 287.0 225 60.9
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.0e-75 286.6 226 59.3
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.7e-75 286.2 225 60.4
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.5e-75 285.8 248 57.3
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 3.5e-75 285.8 192 68.2
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.3e-74 283.1 254 55.1
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.9e-74 282.7 253 55.7
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 8.6e-74 281.2 227 60.4
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 8.6e-74 281.2 232 56.9
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 1.1e-73 280.8 248 58.1
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 1.5e-73 280.4 255 55.7
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.9e-73 280.0 226 60.2
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.5e-73 279.6 170 76.5
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.6e-73 278.5 191 64.9
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 2.1e-72 276.6 226 59.3
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 6.1e-72 275.0 226 58.4
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 6.1e-72 275.0 226 58.4
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 6.1e-72 275.0 193 65.8
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 6.1e-72 275.0 234 57.7
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.0e-71 274.2 193 64.2
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 2.3e-71 273.1 192 62.0
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 3.1e-71 272.7 193 64.2
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 3.1e-71 272.7 226 57.5
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 8.9e-71 271.2 198 63.6
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 8.9e-71 271.2 226 58.4
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 2.0e-70 270.0 193 63.7
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.0e-70 270.0 193 63.7
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 2.6e-70 269.6 193 62.7
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 2.6e-70 269.6 193 62.7
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 3.4e-70 269.2 193 62.7
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.4e-70 269.2 133 99.2
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.4e-70 268.9 193 62.7
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 5.8e-70 268.5 217 58.1
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 7.5e-70 268.1 222 58.1
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 7.5e-70 268.1 225 58.7
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 9.8e-70 267.7 193 62.7
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-69 266.9 189 64.0
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.2e-69 266.5 193 62.7
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 2.2e-69 266.5 219 58.9
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.9e-69 265.4 193 62.7
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 6.4e-69 265.0 192 59.9
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 8.3e-69 264.6 239 53.1
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.1e-68 264.2 193 61.7
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.4e-68 261.9 191 60.2
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.3e-66 257.3 193 60.1
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 3.0e-66 256.1 209 59.3
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 6.6e-66 255.0 195 59.5
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 7.3e-65 251.5 194 60.3
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 9.5e-65 251.1 193 57.0
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 9.5e-65 251.1 193 57.0
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 9.5e-65 251.1 193 57.0
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-64 250.4 186 61.3
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 6.2e-64 248.4 186 60.8
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.4e-63 247.3 183 60.7
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-63 246.9 183 60.7
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 4.0e-63 245.7 233 48.1
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 6.8e-63 245.0 256 53.1
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 6.8e-63 245.0 183 60.1
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 8.9e-63 244.6 252 48.4
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-62 244.2 193 56.5
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.2e-62 244.2 193 56.5
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 5.8e-62 241.9 202 58.4
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 2.2e-61 240.0 191 57.1
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 3.7e-61 239.2 192 57.8
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.4e-60 237.3 183 60.1
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 4.1e-60 235.7 194 57.2
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-59 234.2 179 59.2
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 2.1e-59 233.4 190 58.9
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 3.5e-59 232.6 270 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 8.6e-58 228.0 191 53.9
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 1.5e-57 227.3 144 73.6
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 4.3e-57 225.7 196 53.6
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 4.7e-56 222.2 161 62.7
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 5.2e-55 218.8 162 69.1
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.2e-54 217.6 174 58.6
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.6e-54 216.5 151 68.9
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-53 213.8 177 60.5
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 4.9e-53 212.2 179 57.0
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 8.3e-53 211.5 212 51.9
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 7.8e-51 204.9 187 51.9
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 7.8e-43 178.3 112 71.4
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.1e-40 170.2 120 66.7
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 2.8e-40 169.9 164 50.0
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.6e-35 154.1 243 38.3
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-31 141.4 180 42.8
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 3.1e-31 139.8 203 39.4
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 6.9e-31 138.7 180 42.2
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 6.9e-31 138.7 180 42.2
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.7e-29 134.0 188 41.5
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 4.9e-29 132.5 250 34.8
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 6.4e-29 132.1 291 34.4
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 6.4e-29 132.1 202 36.1
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 4.2e-28 129.4 85 67.1
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.5e-25 120.9 109 54.1
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.3e-25 119.8 96 58.3
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 9.6e-25 118.2 128 49.2
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.8e-24 116.7 68 69.1
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 2.5e-20 103.6 75 62.7
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 9.3e-20 101.7 80 60.0
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-19 100.9 185 35.1
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.9e-18 96.3 70 60.0
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 7.4e-17 92.0 85 54.1
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 1.3e-16 91.3 162 37.7
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 2.1e-16 90.5 151 36.4
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.8e-16 89.4 64 53.1
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 8.2e-16 88.6 149 35.6
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 8.2e-16 88.6 149 35.6
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.5e-09 67.8 39 71.8
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 2.8e-08 63.5 131 31.3
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 9.0e-07 58.5 45 53.3
Cre11.g475550 Chlamydomonas reinhardtii HOM05D031564 ORTHO05D143751 2.0e-06 57.4 186 23.7


User provided reference genes

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