Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.0e-69 264.2 125 100.0
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 4.7e-43 177.9 108 78.7
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.0e-41 172.6 86 94.2
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.0e-29 133.7 94 63.8
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 3.8e-29 131.7 86 65.1
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 8.6e-29 130.6 86 65.1
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 3.3e-28 128.6 86 64.0
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 3.3e-28 128.6 86 65.1
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 3.3e-28 128.6 85 64.7
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 3.3e-28 128.6 86 64.0
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 9.5e-28 127.1 90 61.1
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 9.5e-28 127.1 94 61.7
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 9.5e-28 127.1 90 62.2
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 9.5e-28 127.1 86 61.6
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 9.5e-28 127.1 87 63.2
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 1.6e-27 126.3 86 64.0
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 2.1e-27 125.9 86 66.3
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 2.8e-27 125.6 82 63.4
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.6e-27 125.2 88 63.6
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 6.1e-27 124.4 86 65.1
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 6.1e-27 124.4 86 60.5
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 6.1e-27 124.4 86 60.5
MBI10_g23013_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 8.0e-27 124.0 124 55.6
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 8.0e-27 124.0 86 61.6
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 8.0e-27 124.0 86 61.6
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 8.0e-27 124.0 86 61.6
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.0e-26 123.6 90 62.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 1.4e-26 123.2 95 60.0
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.4e-26 123.2 86 60.5
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 1.4e-26 123.2 90 62.2
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 3.0e-26 122.1 86 62.8
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 4.0e-26 121.7 86 65.1
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 4.0e-26 121.7 86 60.5
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 4.0e-26 121.7 86 62.8
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 6.8e-26 120.9 86 60.5
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 6.8e-26 120.9 86 59.3
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 8.9e-26 120.6 90 61.1
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 8.9e-26 120.6 90 60.0
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 8.9e-26 120.6 86 62.8
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.2e-25 120.2 86 60.5
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.5e-25 119.8 86 61.6
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.0e-25 119.4 86 61.6
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 2.0e-25 119.4 99 56.6
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 2.0e-25 119.4 86 60.5
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 2.0e-25 119.4 87 62.1
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 2.6e-25 119.0 86 60.5
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 2.6e-25 119.0 86 60.5
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 2.6e-25 119.0 86 60.5
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 3.4e-25 118.6 87 62.1
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 4.4e-25 118.2 86 62.8
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 4.4e-25 118.2 90 56.7
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 4.4e-25 118.2 86 60.5
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 5.8e-25 117.9 95 56.8
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 5.8e-25 117.9 87 64.4
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 7.5e-25 117.5 90 56.7
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 9.8e-25 117.1 72 68.1
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 9.8e-25 117.1 99 53.5
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 9.8e-25 117.1 90 56.7
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 9.8e-25 117.1 83 60.2
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 9.8e-25 117.1 81 60.5
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 1.3e-24 116.7 91 57.1
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 1.7e-24 116.3 90 57.8
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.7e-24 116.3 95 56.8
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.7e-24 116.3 95 56.8
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.7e-24 116.3 86 60.5
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.7e-24 116.3 86 60.5
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.7e-24 116.3 86 60.5
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 1.7e-24 116.3 86 57.0
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 2.2e-24 115.9 88 59.1
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 2.2e-24 115.9 86 59.3
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 2.9e-24 115.5 86 57.0
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 2.9e-24 115.5 90 57.8
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.9e-24 115.5 90 56.7
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 2.9e-24 115.5 99 51.5
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 2.9e-24 115.5 88 58.0
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 3.7e-24 115.2 86 60.5
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.7e-24 115.2 90 55.6
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 3.7e-24 115.2 86 59.3
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 4.9e-24 114.8 88 60.2
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 4.9e-24 114.8 88 60.2
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 4.9e-24 114.8 95 55.8
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 4.9e-24 114.8 88 60.2
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 8.3e-24 114.0 86 58.1
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 1.1e-23 113.6 99 53.5
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 1.1e-23 113.6 88 56.8
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.1e-23 113.6 86 59.3
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.1e-23 113.6 88 58.0
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.4e-23 113.2 86 57.0
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.9e-23 112.8 90 52.2
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.9e-23 112.8 84 57.1
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.4e-23 112.5 90 54.4
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.4e-23 112.5 86 57.0
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 3.2e-23 112.1 93 52.7
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 4.1e-23 111.7 84 57.1
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 4.1e-23 111.7 86 57.0
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 5.4e-23 111.3 72 63.9
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.4e-23 111.3 81 58.0
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.0e-23 110.9 90 53.3
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 7.0e-23 110.9 85 58.8
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.2e-22 110.2 83 54.2
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.2e-22 110.2 83 54.2
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.2e-22 110.2 81 56.8
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.2e-22 110.2 87 55.2
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.2e-22 110.2 92 52.2
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.0e-22 109.4 72 62.5
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 3.5e-22 108.6 86 55.8
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 3.5e-22 108.6 82 56.1
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 3.5e-22 108.6 84 54.8
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 6.0e-22 107.8 86 55.8
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 7.8e-22 107.5 86 54.7
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 7.8e-22 107.5 86 54.7
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 7.8e-22 107.5 73 58.9
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 1.0e-21 107.1 86 55.8
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 1.3e-21 106.7 81 55.6
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.3e-21 106.7 86 55.8
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.3e-21 106.7 68 66.2
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.3e-21 105.9 90 54.4
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.9e-21 105.1 86 55.8
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.0e-21 104.8 86 55.8
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 5.6e-20 101.3 86 54.7
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 5.6e-20 101.3 86 54.7
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 5.6e-20 101.3 86 54.7
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 5.6e-20 101.3 82 54.9
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 5.6e-20 101.3 80 55.0
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 7.3e-20 100.9 86 54.7
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 7.3e-20 100.9 84 53.6
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 7.3e-20 100.9 76 56.6
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 9.5e-20 100.5 86 54.7
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.6e-19 99.8 79 51.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 6.2e-19 97.8 86 51.2
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 8.0e-19 97.4 86 51.2
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 8.0e-19 97.4 81 51.9
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 3.1e-18 95.5 86 50.0
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 3.1e-18 95.5 86 50.0
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 3.1e-18 95.5 51 76.5
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.0e-18 95.1 54 72.2
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 5.2e-18 94.7 86 50.0
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 2.6e-17 92.4 82 50.0
MBI10_g16409_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 4.4e-17 91.7 50 82.0
MBI15_g39225_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 4.4e-17 91.7 52 80.8
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 4.4e-17 91.7 51 74.5
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.1e-15 87.0 81 46.9
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.4e-15 86.7 53 66.0
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 5.4e-15 84.7 74 45.9
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 5.4e-15 84.7 57 66.7
MBI05_g43673_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 7.0e-15 84.3 49 79.6
MBI13_g26620_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 1.6e-14 83.2 42 90.5
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 2.1e-14 82.8 71 53.5
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 2.1e-14 82.8 88 45.5
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 1.3e-13 80.1 50 64.0
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 4.3e-12 75.1 48 60.4
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 7.3e-12 74.3 51 58.8
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.4e-10 70.1 86 40.7
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 7.5e-09 64.3 94 36.2
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 1.2e-06 57.0 50 54.0


User provided reference genes

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