Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.0e-149 533.5 291 100.0
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 9.5e-55 218.0 361 43.2
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 6.4e-51 205.3 358 40.2
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 2.1e-49 200.3 353 42.2
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 4.6e-49 199.1 358 38.8
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.9e-48 196.1 358 40.5
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.9e-47 193.7 192 58.9
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.3e-47 193.0 362 40.1
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 7.3e-47 191.8 353 40.5
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 3.6e-46 189.5 351 39.6
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 4.7e-46 189.1 352 39.8
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.1e-45 188.0 367 36.8
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.8e-45 187.2 192 54.7
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 2.3e-45 186.8 350 40.9
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 2.3e-45 186.8 363 39.7
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 3.1e-45 186.4 365 39.2
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 4.0e-45 186.0 177 55.9
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 8.9e-45 184.9 212 50.9
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 8.9e-45 184.9 184 57.1
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 1.5e-44 184.1 353 38.2
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 2.2e-43 180.3 179 53.1
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 8.3e-43 178.3 350 37.7
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.1e-42 177.9 369 37.4
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 1.4e-42 177.6 369 36.6
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 3.2e-42 176.4 179 53.6
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.2e-42 176.4 192 54.2
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 3.2e-42 176.4 192 54.2
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 4.1e-42 176.0 319 41.1
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.1e-42 176.0 369 37.4
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 4.1e-42 176.0 192 50.5
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 5.4e-42 175.6 346 38.2
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 5.4e-42 175.6 171 56.7
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 5.4e-42 175.6 175 53.7
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 1.2e-41 174.5 180 53.3
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 1.6e-41 174.1 185 51.4
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.7e-41 173.3 179 52.0
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 3.5e-41 172.9 214 51.9
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 6.0e-41 172.2 185 50.3
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 6.0e-41 172.2 167 56.3
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 1.0e-40 171.4 354 36.2
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.0e-40 171.4 368 36.1
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 1.0e-40 171.4 355 34.9
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 1.7e-40 170.6 179 50.3
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 1.7e-40 170.6 184 49.5
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 3.0e-40 169.9 192 51.6
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 5.1e-40 169.1 184 54.3
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 6.6e-40 168.7 342 36.8
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 8.6e-40 168.3 346 38.2
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.1e-39 167.9 129 69.0
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 1.9e-39 167.2 353 37.4
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.5e-39 166.8 184 53.3
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 2.5e-39 166.8 180 51.7
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 3.3e-39 166.4 192 51.6
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 4.3e-39 166.0 351 35.6
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 4.3e-39 166.0 342 36.5
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 9.6e-39 164.9 356 37.1
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 9.6e-39 164.9 180 52.2
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.6e-38 164.1 204 50.0
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 2.1e-38 163.7 192 46.4
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 4.7e-38 162.5 341 38.7
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 4.7e-38 162.5 363 35.5
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 8.1e-38 161.8 184 52.2
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.4e-37 161.0 358 36.3
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 2.4e-37 160.2 191 48.2
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 4.0e-37 159.5 350 36.0
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 6.8e-37 158.7 196 49.0
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 8.9e-37 158.3 360 35.8
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.9e-36 154.8 329 37.1
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 9.9e-36 154.8 179 47.5
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 9.9e-36 154.8 193 50.3
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 1.7e-35 154.1 171 52.0
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 2.2e-35 153.7 176 47.2
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 2.9e-35 153.3 192 49.5
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 4.9e-35 152.5 179 46.4
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 8.4e-35 151.8 350 35.1
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.1e-34 151.4 180 47.8
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 1.9e-34 150.6 179 45.8
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 2.4e-34 150.2 163 57.7
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 4.2e-34 149.4 179 46.9
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 4.2e-34 149.4 179 45.8
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 4.2e-34 149.4 179 45.3
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 5.4e-34 149.1 159 52.2
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 5.4e-34 149.1 207 43.0
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 1.2e-33 147.9 179 45.3
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 3.5e-33 146.4 348 32.5
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 3.5e-33 146.4 179 44.7
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 3.5e-33 146.4 182 47.8
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 6.0e-33 145.6 207 41.1
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 7.8e-33 145.2 179 45.8
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 1.7e-32 144.1 180 45.6
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 1.7e-32 144.1 179 45.3
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.9e-32 142.9 354 32.8
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 3.9e-32 142.9 184 48.9
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 3.9e-32 142.9 179 45.3
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 5.1e-32 142.5 182 45.1
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 6.6e-32 142.1 207 41.1
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 6.6e-32 142.1 354 35.3
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 1.5e-31 141.0 177 48.0
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.5e-31 141.0 331 35.0
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 2.5e-31 140.2 205 41.0
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 3.3e-31 139.8 128 57.8
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 7.3e-31 138.7 120 59.2
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 7.3e-31 138.7 175 47.4
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.1e-30 137.1 172 44.8
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 2.1e-30 137.1 172 44.8
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.8e-30 136.7 171 42.7
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 3.6e-30 136.3 172 44.8
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 3.6e-30 136.3 172 44.8
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 1.1e-29 134.8 171 42.1
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.4e-29 134.4 171 42.1
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 1.8e-29 134.0 109 59.6
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 2.4e-29 133.7 174 46.6
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 3.1e-29 133.3 171 41.5
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 3.1e-29 133.3 171 41.5
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 1.2e-28 131.3 171 46.8
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 2.0e-28 130.6 154 47.4
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.6e-28 130.2 229 38.9
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.6e-28 130.2 229 38.9
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 5.8e-28 129.0 353 31.2
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 3.8e-27 126.3 165 50.9
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 4.9e-27 125.9 181 39.8
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 1.4e-26 124.4 324 34.6
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 3.2e-26 123.2 289 34.3
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.6e-25 120.9 135 48.1
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.0e-24 116.7 177 41.2
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 3.0e-24 116.7 130 50.0
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 3.9e-24 116.3 177 42.4
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 5.1e-24 115.9 350 31.4
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.1e-23 114.8 178 39.3
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 1.5e-23 114.4 103 51.5
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 1.9e-23 114.0 183 41.5
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 1.6e-22 110.9 191 37.7
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.1e-22 110.5 161 46.6
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.1e-22 110.5 322 31.7
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 6.2e-22 109.0 424 28.5
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 1.4e-21 107.8 133 48.9
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.3e-19 101.3 117 50.4
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 3.2e-18 96.7 72 73.6
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 9.3e-18 95.1 132 40.9
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.1e-17 94.0 161 39.8
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 2.1e-17 94.0 96 56.2
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.3e-16 91.3 241 36.5
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.8e-16 90.9 109 53.2
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.3e-16 90.5 168 37.5
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 8.1e-14 82.0 184 35.3
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.1e-13 81.6 109 51.4
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.0e-12 77.4 134 38.1
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 5.8e-12 75.9 299 29.8
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 3.5e-09 66.6 140 35.7
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 3.5e-09 66.6 140 35.7
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 3.5e-09 66.6 249 31.3
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.3e-08 64.7 77 48.1
Actinidia16726 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.1e-06 57.4 45 66.7


User provided reference genes

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