Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 7.7e-46 186.8 95 100.0
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 7.0e-23 110.5 111 59.5
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.2e-20 101.3 59 86.4
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.7e-19 98.6 59 81.4
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.7e-19 98.6 59 83.1
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.6e-19 98.2 60 83.3
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 3.6e-19 98.2 59 81.4
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.1e-19 97.4 59 83.1
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.1e-19 97.4 59 83.1
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 6.1e-19 97.4 59 81.4
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.8e-18 95.9 59 81.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.3e-18 95.5 59 81.4
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.3e-18 95.5 59 79.7
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.3e-18 95.5 59 79.7
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.3e-18 95.5 59 81.4
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 2.3e-18 95.5 59 81.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 2.3e-18 95.5 59 79.7
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.3e-18 95.5 59 81.4
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 3.0e-18 95.1 59 79.7
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 3.0e-18 95.1 59 78.0
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 4.0e-18 94.7 59 81.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 4.0e-18 94.7 59 79.7
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.0e-18 94.7 59 79.7
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 5.2e-18 94.4 59 78.0
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 5.2e-18 94.4 59 78.0
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 5.2e-18 94.4 59 78.0
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 5.2e-18 94.4 59 79.7
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 5.2e-18 94.4 59 81.4
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 5.2e-18 94.4 59 79.7
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 6.8e-18 94.0 59 78.0
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.8e-18 94.0 59 78.0
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.8e-18 94.0 59 78.0
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 6.8e-18 94.0 59 78.0
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 6.8e-18 94.0 59 79.7
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 6.8e-18 94.0 59 78.0
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.2e-17 93.2 59 76.3
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.2e-17 93.2 59 76.3
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.2e-17 93.2 59 78.0
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-17 93.2 59 78.0
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-17 93.2 59 78.0
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-17 93.2 59 78.0
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-17 93.2 59 79.7
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.2e-17 93.2 59 78.0
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.5e-17 92.8 59 78.0
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.5e-17 92.8 59 78.0
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.5e-17 92.8 59 78.0
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.5e-17 92.8 59 78.0
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.0e-17 92.4 59 76.3
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 2.0e-17 92.4 59 76.3
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-17 92.4 59 76.3
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-17 92.4 59 76.3
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.0e-17 92.4 59 78.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.6e-17 92.0 76 68.4
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.6e-17 92.0 59 76.3
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.6e-17 92.0 59 76.3
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 2.6e-17 92.0 59 78.0
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 2.6e-17 92.0 59 78.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.6e-17 92.0 59 76.3
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.6e-17 92.0 59 76.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.6e-17 92.0 59 76.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 3.4e-17 91.7 59 76.3
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.4e-17 91.7 59 76.3
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 3.4e-17 91.7 80 61.2
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.4e-17 91.7 59 76.3
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.4e-17 91.7 59 76.3
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 4.4e-17 91.3 59 74.6
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 4.4e-17 91.3 59 74.6
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 4.4e-17 91.3 59 74.6
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.4e-17 91.3 59 76.3
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.4e-17 91.3 59 76.3
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 5.7e-17 90.9 59 76.3
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 5.7e-17 90.9 59 76.3
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 5.7e-17 90.9 59 76.3
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 5.7e-17 90.9 59 74.6
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 5.7e-17 90.9 59 76.3
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 7.5e-17 90.5 59 74.6
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 7.5e-17 90.5 59 74.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 7.5e-17 90.5 59 74.6
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 7.5e-17 90.5 59 76.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 9.8e-17 90.1 59 74.6
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 76.3
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 76.3
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 76.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 76.3
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 76.3
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 76.3
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 72.9
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 74.6
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 72.9
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.3e-16 89.7 59 72.9
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.7e-16 89.4 59 74.6
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.7e-16 89.4 59 72.9
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.7e-16 89.4 59 72.9
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.7e-16 89.4 59 72.9
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.7e-16 89.4 59 72.9
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.7e-16 89.4 59 76.3
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.7e-16 89.4 59 76.3
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 2.2e-16 89.0 59 76.3
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 3.7e-16 88.2 59 74.6
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.7e-16 88.2 59 72.9
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.8e-16 87.8 59 74.6
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 4.8e-16 87.8 59 74.6
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 8.3e-16 87.0 59 72.9
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 8.3e-16 87.0 59 72.9
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.3e-16 87.0 59 74.6
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.3e-16 87.0 59 74.6
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.3e-16 87.0 59 74.6
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-15 86.3 59 74.6
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-15 86.3 59 74.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.4e-15 86.3 59 74.6
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.8e-15 85.9 56 71.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-15 85.9 59 72.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-15 85.9 59 72.9
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-15 85.9 59 72.9
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 2.4e-15 85.5 59 72.9
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-15 85.5 59 72.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.4e-15 85.5 59 72.9
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.4e-15 85.5 59 71.2
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.4e-15 85.5 59 71.2
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.4e-15 85.5 59 72.9
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.4e-15 85.5 59 72.9
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 3.1e-15 85.1 56 71.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-15 84.7 59 72.9
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 4.1e-15 84.7 59 72.9
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.1e-15 84.7 59 71.2
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-14 83.2 59 71.2
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-14 82.8 59 74.6
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.6e-14 82.8 59 67.8
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.6e-14 82.8 59 66.1
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.6e-14 82.8 59 66.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.6e-14 82.8 59 69.5
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.0e-14 82.4 59 66.1
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 2.7e-14 82.0 77 58.4
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.3e-13 79.7 59 64.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.3e-13 79.0 59 66.1
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.1e-12 76.6 59 62.7
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.2e-11 73.2 59 62.7
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.2e-11 73.2 65 64.6
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 1.6e-11 72.8 59 61.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-09 66.6 54 66.7
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.6e-09 65.5 47 72.3
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-09 64.7 60 60.0
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 5.7e-09 64.3 56 55.4
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.7e-08 62.8 39 82.1
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 7.0e-07 57.4 65 52.3


User provided reference genes

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