Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g19613_MAGBIO Magnolia biondii HOM05D002695 ORTHO05D002964 8.2e-52 206.8 109 100.0
MBI17_g29796_MAGBIO Magnolia biondii HOM05D002695 ORTHO05D002964 5.9e-42 174.1 109 85.3
MBI12_g45456_MAGBIO Magnolia biondii HOM05D002695 ORTHO05D010614 3.1e-35 151.8 88 89.8
MBI15_g32305_MAGBIO Magnolia biondii HOM05D002695 ORTHO05D002964 1.3e-28 129.8 83 85.5
MBI12_g40663_MAGBIO Magnolia biondii HOM05D009592 ORTHO05D010614 5.9e-26 120.9 79 86.1
Dinv30618 Davidia involucrata HOM05D002695 ORTHO05D002964 5.7e-21 104.4 83 68.7
Nn8g40760 Nelumbo nucifera HOM05D002695 ORTHO05D002964 2.8e-20 102.1 83 71.1
TPR.G37279 Trifolium pratense HOM05D002695 ORTHO05D002964 1.8e-19 99.4 96 59.4
CiPaw.02G157900 Carya illinoinensis HOM05D002695 ORTHO05D002964 3.1e-19 98.6 83 63.9
Psat5g303240 Pisum sativum HOM05D002695 ORTHO05D002964 3.1e-19 98.6 83 65.1
Lj3g0003229 Lotus japonicus HOM05D002695 ORTHO05D002964 4.1e-19 98.2 83 65.1
Medtr2g104070 Medicago truncatula HOM05D002695 ORTHO05D002964 9.2e-19 97.1 83 63.9
Cfa001951 Carpinus fangiana HOM05D002695 ORTHO05D002964 1.2e-18 96.7 83 62.7
Hma1.2p1_1339F.1_g276610 Hydrangea macrophylla HOM05D002695 ORTHO05D002964 2.0e-18 95.9 95 56.8
Sc10g0006020 Simmondsia chinensis HOM05D002695 ORTHO05D002964 2.7e-18 95.5 83 63.9
Ca_01050_v3 Cicer arietinum L. HOM05D002695 ORTHO05D002964 7.8e-18 94.0 83 62.7
Thecc.06G030300 Theobroma cacao HOM05D002695 ORTHO05D002964 7.8e-18 94.0 96 57.3
CiPaw.01G249300 Carya illinoinensis HOM05D002695 ORTHO05D002964 1.0e-17 93.6 83 61.4
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.3e-17 93.2 95 58.9
Glyma.13G366600 Glycine max HOM05D002695 ORTHO05D002964 1.3e-17 93.2 83 60.2
CDE03G0280 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.7e-17 92.8 83 61.4
MD17G1213900 Malus domestica HOM05D002695 ORTHO05D002964 1.7e-17 92.8 83 60.2
TAR636G3025 Trochodendron aralioides HOM05D002695 ORTHO05D002964 2.9e-17 92.0 83 62.7
Haze_16574 Corylus avellana HOM05D002695 ORTHO05D002964 3.8e-17 91.7 83 61.4
QL05p030652 Quercus lobata HOM05D002695 ORTHO05D002964 3.8e-17 91.7 96 54.2
Lj1C756G2 Lonicera japonica HOM05D002695 ORTHO05D002964 5.0e-17 91.3 83 61.4
CSS0040579 Camellia sinensis var. sinensis HOM05D002695 ORTHO05D002964 8.6e-17 90.5 82 61.0
PSO210G7357 Papaver somniferum HOM05D002695 ORTHO05D002964 1.1e-16 90.1 83 61.4
VMungo1080G0605 Vigna mungo HOM05D002695 ORTHO05D002964 1.9e-16 89.4 83 56.6
Eucgr.F03886 Eucalyptus grandis HOM05D002695 ORTHO05D002964 2.5e-16 89.0 83 61.4
Manes.04G111600 Manihot esculenta HOM05D002695 ORTHO05D002964 2.5e-16 89.0 83 57.8
PSO210G1992 Papaver somniferum HOM05D002695 ORTHO05D002964 2.5e-16 89.0 83 61.4
Actinidia15751 Actinidia chinensis HOM05D002695 ORTHO05D002964 3.3e-16 88.6 82 54.9
Eucgr.F03888 Eucalyptus grandis HOM05D002695 ORTHO05D002964 3.3e-16 88.6 83 60.2
Prupe.3G089800 Prunus persica HOM05D002695 ORTHO05D002964 3.3e-16 88.6 83 59.0
GSVIVG01017363001 Vitis vinifera HOM05D002695 ORTHO05D002964 3.3e-16 88.6 82 61.0
arahy.Tifrunner.gnm1.ann1.E3M3ZX Arachis hypogaea HOM05D002695 ORTHO05D002964 7.3e-16 87.4 83 60.2
arahy.Tifrunner.gnm1.ann1.XRJX2S Arachis hypogaea HOM05D002695 ORTHO05D002964 7.3e-16 87.4 83 60.2
Oeu056068.1 Olea europaea HOM05D002695 ORTHO05D002964 9.5e-16 87.0 83 59.0
Atru.chr1.2893 Acer truncatum HOM05D002695 ORTHO05D002964 1.6e-15 86.3 83 55.4
Duzib160G0818 Durio zibethinus HOM05D002695 ORTHO05D002964 1.6e-15 86.3 96 53.1
FvH4_6g29460 Fragaria vesca HOM05D002695 ORTHO05D002964 1.6e-15 86.3 83 59.0
FAN05G1325 Fragaria x ananassa HOM05D002695 ORTHO05D002964 1.6e-15 86.3 83 59.0
FAN09G0304 Fragaria x ananassa HOM05D002695 ORTHO05D002964 1.6e-15 86.3 83 59.0
FAN14G2212 Fragaria x ananassa HOM05D002695 ORTHO05D002964 1.6e-15 86.3 83 59.0
MD15G1126500 Malus domestica HOM05D002695 ORTHO05D002964 1.6e-15 86.3 83 63.9
RcHm_v2.0_Chr2g0134961 Rosa chinensis HOM05D002695 ORTHO05D002964 1.6e-15 86.3 83 57.8
FAN02G0115 Fragaria x ananassa HOM05D002695 ORTHO05D002964 2.1e-15 85.9 83 57.8
PGR102G1641 Punica granatum HOM05D002695 ORTHO05D002964 2.1e-15 85.9 83 59.0
SalBow2G2196 Salvia bowleyana HOM05D002695 ORTHO05D002964 2.1e-15 85.9 83 57.8
Ciclev10024984m.g Citrus clementina HOM05D002695 ORTHO05D002964 2.8e-15 85.5 83 56.6
Rhsim08G0212100 Rhododendron simsii HOM05D002695 ORTHO05D002964 2.8e-15 85.5 82 54.9
CiPaw.07G224300 Carya illinoinensis HOM05D002695 ORTHO05D002964 4.7e-15 84.7 97 54.6
Lalb_Chr24g0395441 Lupinus albus HOM05D002695 ORTHO05D002964 8.0e-15 84.0 88 53.4
TWI12G0825 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 8.0e-15 84.0 84 54.8
Cpa.g.sc167.2 Carica papaya HOM05D002695 ORTHO05D002964 1.0e-14 83.6 82 57.3
Sabra01G0159500 Salix brachista HOM05D002695 ORTHO05D002964 1.0e-14 83.6 95 49.5
Dinv08630 Davidia involucrata HOM05D002695 ORTHO05D002964 1.4e-14 83.2 83 59.0
Dinv18209 Davidia involucrata HOM05D002695 ORTHO05D002964 1.4e-14 83.2 83 59.0
EL10Ac9g21881 Beta vulgaris HOM05D002695 ORTHO05D002964 1.8e-14 82.8 107 49.5
Prupe.1G482400 Prunus persica HOM05D002695 ORTHO05D002964 1.8e-14 82.8 83 59.0
ATR0320G044 Amborella trichopoda HOM05D002695 ORTHO05D002964 2.3e-14 82.4 83 56.6
Hma1.2p1_0043F.1_g025850 Hydrangea macrophylla HOM05D002695 ORTHO05D002964 2.3e-14 82.4 83 55.4
GSVIVG01035873001 Vitis vinifera HOM05D002695 ORTHO05D002964 3.0e-14 82.0 85 58.8
Duzib192G0949 Durio zibethinus HOM05D002695 ORTHO05D002964 4.0e-14 81.6 75 61.3
AUR62016326 Chenopodium quinoa HOM05D002695 ORTHO05D002964 5.2e-14 81.3 83 56.6
Cc04_g04510 Coffea canephora HOM05D002695 ORTHO05D002964 5.2e-14 81.3 83 56.6
Aqoxy7G03638 Aquilegia oxysepala HOM05D002695 ORTHO05D002964 6.8e-14 80.9 83 59.0
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 8.9e-14 80.5 83 56.6
Haze_21501 Corylus avellana HOM05D002695 ORTHO05D002964 1.2e-13 80.1 83 55.4
MD08G1155500 Malus domestica HOM05D002695 ORTHO05D002964 1.2e-13 80.1 95 57.9
Hund30133 Selenicereus undatus HOM05D002695 ORTHO05D002964 1.5e-13 79.7 96 52.1
Lalb_Chr22g0350831 Lupinus albus HOM05D002695 ORTHO05D002964 2.6e-13 79.0 83 54.2
Psat5g029320 Pisum sativum HOM05D002695 ORTHO05D002964 2.6e-13 79.0 83 56.6
Gohir.A10G072900 Gossypium hirsutum HOM05D002695 ORTHO05D002964 4.4e-13 78.2 73 60.3
THA.LOC104818021 Tarenaya hassleriana HOM05D002695 ORTHO05D002964 4.4e-13 78.2 96 45.8
MBI10_g35508_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 9.8e-13 77.0 56 80.4
vmacro05172 Vaccinium macrocarpon HOM05D002695 ORTHO05D002964 1.3e-12 76.6 83 56.6
Cfa013131 Carpinus fangiana HOM05D002695 ORTHO05D002964 1.7e-12 76.3 97 48.5
AUR62011508 Chenopodium quinoa HOM05D002695 ORTHO05D002964 1.7e-12 76.3 83 53.0
Thecc.09G023100 Theobroma cacao HOM05D002695 ORTHO05D002964 2.2e-12 75.9 83 56.6
FAN15G2469 Fragaria x ananassa HOM05D002695 ORTHO05D002964 2.9e-12 75.5 95 52.6
Gohir.D10G078100 Gossypium hirsutum HOM05D002695 ORTHO05D002964 2.9e-12 75.5 72 59.7
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 3.7e-12 75.1 83 54.2
FAN27G2745 Fragaria x ananassa HOM05D002695 ORTHO05D002964 3.7e-12 75.1 95 52.6
RcHm_v2.0_Chr6g0297751 Rosa chinensis HOM05D002695 ORTHO05D002964 3.7e-12 75.1 83 56.6
TPR.G3158 Trifolium pratense HOM05D002695 ORTHO05D002964 4.9e-12 74.7 83 53.0
FvH4_2g28930 Fragaria vesca HOM05D002695 ORTHO05D002964 6.4e-12 74.3 83 55.4
FAN20G0785 Fragaria x ananassa HOM05D002695 ORTHO05D002964 6.4e-12 74.3 83 55.4
Medtr3g106770 Medicago truncatula HOM05D002695 ORTHO05D002964 6.4e-12 74.3 83 53.0
Sopen03g035750 Solanum pennellii HOM05D002695 ORTHO05D002964 6.4e-12 74.3 100 49.0
Ah.10g035780 Amaranthus hybridus HOM05D002695 ORTHO05D002964 8.3e-12 73.9 84 54.8
CANSAT56G0329 Cannabis sativa HOM05D002695 ORTHO05D002964 1.1e-11 73.6 95 47.4
Duzib150G1316 Durio zibethinus HOM05D002695 ORTHO05D002964 1.1e-11 73.6 83 51.8
HanXRQChr16g0510741 Helianthus annuus HOM05D002695 ORTHO05D002964 1.1e-11 73.6 84 54.8
TWI34G0457 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 1.1e-11 73.6 83 55.4
EL10Ac2g04199 Beta vulgaris HOM05D002695 ORTHO05D002964 1.4e-11 73.2 83 50.6
Gohir.D06G100800 Gossypium hirsutum HOM05D002695 ORTHO05D002964 1.4e-11 73.2 83 53.0
Gorai.010G115900 Gossypium raimondii HOM05D002695 ORTHO05D002964 1.4e-11 73.2 83 53.0
Ciclev10007589m.g Citrus clementina HOM05D002695 ORTHO05D002964 1.9e-11 72.8 83 55.4
Ca_15746_v3 Cicer arietinum L. HOM05D002695 ORTHO05D002964 2.4e-11 72.4 83 54.2
COL.COLO4_11913 Corchorus olitorius HOM05D002695 ORTHO05D002964 2.4e-11 72.4 96 49.0
COL.COLO4_18872 Corchorus olitorius HOM05D002695 ORTHO05D002964 2.4e-11 72.4 83 53.0
Gohir.A06G098700 Gossypium hirsutum HOM05D002695 ORTHO05D002964 2.4e-11 72.4 83 53.0
Gorai.011G084800 Gossypium raimondii HOM05D002695 ORTHO05D002964 2.4e-11 72.4 69 60.9
Lj8C705G2 Lonicera japonica HOM05D002695 ORTHO05D002964 2.4e-11 72.4 83 49.4
PGSC0003DMG400000644 Solanum tuberosum HOM05D002695 ORTHO05D002964 2.4e-11 72.4 96 49.0
TWI75G1220 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 2.4e-11 72.4 75 56.0
arahy.Tifrunner.gnm1.ann1.DLQB4B Arachis hypogaea HOM05D002695 ORTHO05D002964 3.2e-11 72.0 83 51.8
Rhsim07G0159300 Rhododendron simsii HOM05D002695 ORTHO05D002964 3.2e-11 72.0 83 54.2
Solyc03g116820.4 Solanum lycopersicum HOM05D002695 ORTHO05D002964 3.2e-11 72.0 83 53.0
Actinidia15669 Actinidia chinensis HOM05D002695 ORTHO05D002964 4.1e-11 71.6 83 54.2
Peaxi162Scf01131g00013 Petunia axillaris HOM05D002695 ORTHO05D002964 4.1e-11 71.6 83 50.6
Atru.chr7.2445 Acer truncatum HOM05D002695 ORTHO05D002964 5.4e-11 71.2 83 50.6
Actinidia14600 Actinidia chinensis HOM05D002695 ORTHO05D002964 9.2e-11 70.5 83 53.0
Gohir.A07G029000 Gossypium hirsutum HOM05D002695 ORTHO05D002964 1.6e-10 69.7 83 51.8
Phvul.005G179100 Phaseolus vulgaris HOM05D002695 ORTHO05D002964 1.6e-10 69.7 83 49.4
Potri.018G026000 Populus trichocarpa HOM05D002695 ORTHO05D002964 1.6e-10 69.7 80 50.0
CAN.G407.71 Capsicum annuum HOM05D002695 ORTHO05D002964 3.5e-10 68.6 96 44.8
Glyma.06G067100 Glycine max HOM05D002695 ORTHO05D002964 3.5e-10 68.6 83 49.4
Phvul.009G092100 Phaseolus vulgaris HOM05D002695 ORTHO05D002964 3.5e-10 68.6 83 49.4
Aa31LG2G17770 Aethionema arabicum HOM05D002695 ORTHO05D002964 4.6e-10 68.2 91 49.5
CANSAT25G2957 Cannabis sativa HOM05D002695 ORTHO05D002964 4.6e-10 68.2 85 52.9
FAN24G0091 Fragaria x ananassa HOM05D002695 ORTHO05D002964 4.6e-10 68.2 83 54.2
Oeu010900.1 Olea europaea HOM05D002695 ORTHO05D002964 4.6e-10 68.2 83 47.0
BcaNung03142 Brassica carinata HOM05D002695 ORTHO05D002964 6.0e-10 67.8 83 47.0
Thhalv10024530m.g Eutrema salsugineum HOM05D002695 ORTHO05D002964 6.0e-10 67.8 83 48.2
AT4G32160 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 7.8e-10 67.4 83 49.4
AL3G28560 Arabidopsis lyrata HOM05D002695 ORTHO05D002964 1.0e-09 67.0 83 43.4
Thhalv10020136m.g Eutrema salsugineum HOM05D002695 ORTHO05D002964 1.3e-09 66.6 83 43.4
HPP92_023796 Vanilla planifolia HOM05D002695 ORTHO05D002964 1.7e-09 66.2 82 47.6
Zm00001eb275380 Zea mays HOM05D002695 ORTHO05D002964 1.7e-09 66.2 83 47.0
Glyma.04G065700 Glycine max HOM05D002695 ORTHO05D002964 2.3e-09 65.9 83 48.2
AT3G15920 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 3.0e-09 65.5 83 42.2
Gohir.D07G033000 Gossypium hirsutum HOM05D002695 ORTHO05D002964 3.9e-09 65.1 83 49.4
Gorai.001G034600 Gossypium raimondii HOM05D002695 ORTHO05D002964 3.9e-09 65.1 83 49.4
SHI11230 Sapria himalayana HOM05D002695 ORTHO05D002964 3.9e-09 65.1 83 44.6
Eucgr.C01726 Eucalyptus grandis HOM05D002695 ORTHO05D002964 5.0e-09 64.7 83 48.2
AT2G25350 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 6.6e-09 64.3 83 48.2
A01p06170 Brassica napus HOM05D002695 ORTHO05D002964 6.6e-09 64.3 83 45.8
BraA01t00583Z Brassica rapa HOM05D002695 ORTHO05D002964 6.6e-09 64.3 83 45.8
Nitab4.5_0008560g0020 Nicotiana tabacum HOM05D002695 ORTHO05D002964 6.6e-09 64.3 83 43.4
Hund25561 Selenicereus undatus HOM05D002695 ORTHO05D002964 6.6e-09 64.3 83 51.8
Migut.A00032 Erythranthe guttata HOM05D002695 ORTHO05D002964 8.6e-09 63.9 83 44.6
MBI03_g15243_MAGBIO Magnolia biondii HOM05D002695 ORTHO05D002964 8.6e-09 63.9 43 81.4
PGR031G0813 Punica granatum HOM05D002695 ORTHO05D002964 8.6e-09 63.9 84 52.4
THA.LOC104818613 Tarenaya hassleriana HOM05D002695 ORTHO05D002964 8.6e-09 63.9 88 46.6
C07p59100 Brassica napus HOM05D002695 ORTHO05D002964 1.1e-08 63.5 83 47.0
BolC7t46358H Brassica oleracea HOM05D002695 ORTHO05D002964 1.1e-08 63.5 83 47.0
Carub.0003s1566 Capsella rubella HOM05D002695 ORTHO05D002964 1.1e-08 63.5 84 41.7
Carub.0007s0840 Capsella rubella HOM05D002695 ORTHO05D002964 1.5e-08 63.2 83 48.2
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 1.5e-08 63.2 83 49.4
Lalb_Chr11g0063681 Lupinus albus HOM05D002695 ORTHO05D002964 1.5e-08 63.2 83 49.4
CAN.G985.3 Capsicum annuum HOM05D002695 ORTHO05D002964 1.9e-08 62.8 83 48.2
arahy.Tifrunner.gnm1.ann1.HPR99D Arachis hypogaea HOM05D002695 ORTHO05D002964 2.5e-08 62.4 74 50.0
DCAR_006212 Daucus carota HOM05D002695 ORTHO05D002964 2.5e-08 62.4 95 45.3
Solyc08g042130.2 Solanum lycopersicum HOM05D002695 ORTHO05D002964 2.5e-08 62.4 83 47.0
Sopen08g012640 Solanum pennellii HOM05D002695 ORTHO05D002964 2.5e-08 62.4 83 47.0
A03p61250 Brassica napus HOM05D002695 ORTHO05D002964 3.3e-08 62.0 83 45.8
BraA03t15169Z Brassica rapa HOM05D002695 ORTHO05D002964 3.3e-08 62.0 83 45.8
Sp3g14240 Schrenkiella parvula HOM05D002695 ORTHO05D002964 3.3e-08 62.0 83 38.6
vmacro19008 Vaccinium macrocarpon HOM05D002695 ORTHO05D002964 3.3e-08 62.0 63 49.2
Lj1g0011228 Lotus japonicus HOM05D002695 ORTHO05D002964 4.3e-08 61.6 83 48.2
SalBow4G1113 Salvia bowleyana HOM05D002695 ORTHO05D002964 4.3e-08 61.6 84 45.2
Hund04504 Selenicereus undatus HOM05D002695 ORTHO05D002964 7.3e-08 60.8 102 40.2
Sabra18G0028500 Salix brachista HOM05D002695 ORTHO05D002964 9.5e-08 60.5 80 45.0
Sed0003168 Sechium edule HOM05D002695 ORTHO05D002964 9.5e-08 60.5 95 45.3
VMungo1309G2073 Vigna mungo HOM05D002695 ORTHO05D002964 1.2e-07 60.1 83 45.8
C01p06800 Brassica napus HOM05D002695 ORTHO05D002964 1.6e-07 59.7 83 43.4
BolC1t00674H Brassica oleracea HOM05D002695 ORTHO05D002964 1.6e-07 59.7 83 43.4
Nitab4.5_0002408g0040 Nicotiana tabacum HOM05D002695 ORTHO05D002964 1.6e-07 59.7 85 45.9
BcaC09g52002 Brassica carinata HOM05D002695 ORTHO05D002964 2.1e-07 59.3 83 43.4
TAR625G0548 Trochodendron aralioides HOM05D002695 ORTHO05D002964 2.8e-07 58.9 54 64.8
AL4G16780 Arabidopsis lyrata HOM05D002695 ORTHO05D002964 3.6e-07 58.5 83 43.4
Sed0017615 Sechium edule HOM05D002695 ORTHO05D002964 4.7e-07 58.2 83 48.2
DCAR_001533 Daucus carota HOM05D002695 ORTHO05D002964 8.0e-07 57.4 103 40.8
Lalb_Chr23g0268461 Lupinus albus HOM05D002695 ORTHO05D002964 8.0e-07 57.4 83 49.4
unitig_748.g7555 Utricularia gibba HOM05D002695 ORTHO05D002964 1.4e-06 56.6 83 39.8
Hma1.2p1_0354F.1_g133640 Hydrangea macrophylla HOM05D002695 ORTHO05D002964 1.8e-06 56.2 55 56.4
QL02p021402 Quercus lobata HOM05D002695 ORTHO05D002964 1.8e-06 56.2 83 45.8
SGA_v2.0_scaffold20G09108 Striga asiatica HOM05D002695 ORTHO05D002964 2.3e-06 55.8 83 44.6
Peaxi162Scf00332g00539 Petunia axillaris HOM05D002695 ORTHO05D002964 3.1e-06 55.5 90 42.2
CARHR091060 Cardamine hirsuta HOM05D002695 ORTHO05D002964 6.8e-06 54.3 83 38.6
SHI18543 Sapria himalayana HOM05D002695 ORTHO05D002964 6.8e-06 54.3 83 44.6


User provided reference genes

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