Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.2e-197 693.0 336 100.0
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.7e-185 652.5 344 93.0
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 7.9e-146 520.8 336 74.1
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 4.3e-144 515.0 336 73.8
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 6.3e-143 511.1 336 74.1
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 1.1e-142 510.4 337 73.6
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 3.1e-142 508.8 336 72.3
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 5.3e-142 508.1 336 72.3
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 9.1e-142 507.3 336 72.0
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 9.1e-142 507.3 338 72.2
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.2e-141 506.9 336 72.0
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 2.6e-141 505.8 338 72.2
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.6e-141 505.8 336 72.0
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 3.4e-141 505.4 337 73.3
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 1.0e-140 503.8 336 72.3
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.0e-140 503.8 338 72.2
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.3e-140 503.4 337 72.4
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 2.2e-140 502.7 336 70.8
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 2.2e-140 502.7 332 73.2
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 2.9e-140 502.3 335 71.0
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 5.0e-140 501.5 336 71.7
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 5.0e-140 501.5 338 71.9
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 5.0e-140 501.5 338 71.3
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 8.5e-140 500.7 336 71.4
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.9e-139 499.6 337 70.6
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 1.9e-139 499.6 337 71.8
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.9e-139 499.6 337 71.8
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 3.2e-139 498.8 334 71.6
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.5e-139 498.0 337 73.3
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 7.2e-139 497.7 335 71.9
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 7.2e-139 497.7 335 71.9
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 2.7e-138 495.7 337 71.5
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.7e-138 495.7 337 71.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 3.6e-138 495.4 337 70.9
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.0e-137 493.8 337 70.0
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 2.3e-137 492.7 337 70.6
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 3.0e-137 492.3 337 72.1
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.5e-136 490.0 337 69.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.0e-136 489.6 337 69.7
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 3.3e-136 488.8 338 69.5
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 5.7e-136 488.0 336 70.2
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 5.7e-136 488.0 339 69.0
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.8e-135 485.7 338 68.9
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 3.1e-134 482.3 334 70.7
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 5.3e-134 481.5 338 68.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 7.0e-134 481.1 336 69.3
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 7.0e-134 481.1 337 68.5
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 7.0e-134 481.1 338 67.8
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 9.1e-134 480.7 337 69.4
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.6e-133 479.2 337 68.0
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 2.6e-133 479.2 336 69.3
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.5e-133 478.4 331 71.0
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.5e-133 478.4 338 68.9
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 5.9e-133 478.0 337 68.8
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.0e-132 477.2 330 69.4
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 1.0e-132 477.2 334 68.6
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 2.9e-132 475.7 325 70.8
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 6.5e-132 474.6 336 68.5
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 8.5e-132 474.2 331 70.4
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-131 473.8 338 67.8
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.4e-131 473.4 334 69.5
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 1.4e-131 473.4 336 67.9
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.9e-131 473.0 336 69.9
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.9e-131 473.0 338 67.5
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.9e-131 473.0 338 67.5
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 1.9e-131 473.0 337 68.0
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.9e-131 473.0 336 69.9
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 5.5e-131 471.5 337 68.8
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.2e-130 470.3 337 65.9
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 2.1e-130 469.5 339 68.1
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 8.0e-130 467.6 337 67.7
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.4e-129 466.8 335 69.0
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.8e-129 466.5 336 66.4
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.0e-129 465.7 337 67.1
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 3.0e-129 465.7 330 68.2
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 3.9e-129 465.3 338 67.5
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.4e-128 461.8 337 66.8
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 5.7e-128 461.5 341 65.1
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 7.4e-128 461.1 333 66.1
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 9.7e-128 460.7 337 67.1
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.3e-127 460.3 346 65.9
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.3e-127 460.3 331 66.5
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.3e-127 460.3 337 68.0
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.7e-127 459.9 339 67.0
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 2.2e-127 459.5 331 66.8
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 3.7e-127 458.8 339 64.9
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 5.3e-126 454.9 334 67.4
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 3.8e-124 448.7 338 66.6
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.1e-123 447.2 333 66.1
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 7.2e-123 444.5 333 67.0
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.7e-122 442.6 334 65.0
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.0e-121 440.7 329 66.6
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 5.2e-121 438.3 334 64.4
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 8.8e-121 437.6 313 66.1
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 7.5e-120 434.5 335 65.4
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.2e-119 433.0 330 66.7
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.1e-118 430.6 337 64.1
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 3.1e-118 429.1 329 62.6
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 5.0e-116 421.8 338 60.7
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 8.5e-116 421.0 327 62.1
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 1.1e-115 420.6 328 62.5
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.5e-115 420.2 327 62.1
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 7.2e-115 417.9 337 62.0
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 2.7e-114 416.0 330 61.2
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.4e-113 413.7 336 60.1
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 3.0e-113 412.5 328 64.0
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-111 407.1 321 63.9
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.8e-111 406.0 377 55.2
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 2.8e-111 406.0 337 59.6
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.4e-110 403.7 329 60.5
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 7.0e-110 401.4 330 60.6
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 7.0e-110 401.4 331 60.7
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-109 400.6 290 67.6
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 3.5e-109 399.1 331 59.5
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 3.5e-109 399.1 289 69.2
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.1e-106 389.8 254 71.7
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.7e-103 380.2 334 59.6
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 5.9e-101 371.7 315 59.4
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 3.2e-94 349.4 261 67.0
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.3e-91 339.3 336 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.6e-90 335.9 384 47.1
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 3.5e-85 319.3 348 49.4
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.5e-83 313.9 340 50.0
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.5e-83 313.2 347 51.0
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 2.2e-79 300.1 393 45.8
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.6e-77 293.9 276 54.3
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 2.3e-76 290.0 216 66.2
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 8.6e-76 288.1 408 42.2
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.1e-75 287.7 208 67.8
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.6e-74 283.9 314 51.3
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 8.9e-73 278.1 191 68.6
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 9.0e-65 251.5 249 53.8
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 3.0e-60 236.5 194 56.2
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.1e-59 234.6 185 58.9
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.4e-54 217.6 155 66.5
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 6.5e-47 192.2 143 63.6
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.2e-46 189.9 248 44.4
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.6e-45 187.6 380 33.2
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 6.7e-44 182.2 155 59.4
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 4.8e-42 176.0 139 61.9
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 4.8e-42 176.0 139 61.9
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 6.1e-37 159.1 338 33.7
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 3.0e-36 156.8 135 58.5
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 3.6e-29 133.3 91 65.9
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 5.1e-28 129.4 144 47.9
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 4.2e-22 109.8 110 53.6
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 5.7e-19 99.4 88 58.0
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 9.7e-19 98.6 414 25.6
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 9.1e-17 92.0 76 57.9
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.3e-11 73.6 39 84.6
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 6.3e-10 69.3 71 49.3
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.2e-08 65.1 67 50.7
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.2e-07 60.8 47 63.8
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 2.5e-06 57.4 67 47.8


User provided reference genes

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