Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI09_g40923_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 1.5e-92 342.8 173 100.0
MBI09_g01930_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 7.7e-28 127.9 76 89.5
TAR381G1195 Trochodendron aralioides HOM05D003748 ORTHO05D004108 5.5e-18 95.1 71 67.6
vmacro12490 Vaccinium macrocarpon HOM05D003748 ORTHO05D004108 1.6e-17 93.6 182 39.0
Eucgr.F02610 Eucalyptus grandis HOM05D003748 ORTHO05D004108 4.7e-17 92.0 65 72.3
ClCG09G010620 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.0e-16 90.9 74 62.2
Dinv41714 Davidia involucrata HOM05D003748 ORTHO05D004108 3.0e-16 89.4 76 63.2
Nn5g27683 Nelumbo nucifera HOM05D003748 ORTHO05D004108 6.8e-16 88.2 75 60.0
Hma1.2p1_0342F.1_g130730 Hydrangea macrophylla HOM05D003748 ORTHO05D004108 8.8e-16 87.8 74 63.5
Potri.013G112800 Populus trichocarpa HOM05D003748 ORTHO05D004108 8.8e-16 87.8 74 63.5
Dinv03390 Davidia involucrata HOM05D003748 ORTHO05D004108 1.2e-15 87.4 75 60.0
Gorai.013G140200 Gossypium raimondii HOM05D003748 ORTHO05D004108 1.2e-15 87.4 74 59.5
Rhsim06G0096300 Rhododendron simsii HOM05D003748 ORTHO05D004108 1.2e-15 87.4 69 65.2
MSTRG.22452 Avicennia marina HOM05D003748 ORTHO05D004108 1.5e-15 87.0 74 62.2
SalBow6G2274 Salvia bowleyana HOM05D003748 ORTHO05D004108 1.5e-15 87.0 76 61.8
Sed0001630 Sechium edule HOM05D003748 ORTHO05D004108 1.5e-15 87.0 63 68.3
Gohir.D13G125300 Gossypium hirsutum HOM05D003748 ORTHO05D004108 2.0e-15 86.7 74 59.5
Thecc.08G183900 Theobroma cacao HOM05D003748 ORTHO05D004108 2.0e-15 86.7 75 60.0
Actinidia02577 Actinidia chinensis HOM05D003748 ORTHO05D004108 2.6e-15 86.3 76 59.2
Lalb_Chr01g0010201 Lupinus albus HOM05D003748 ORTHO05D004108 2.6e-15 86.3 63 68.3
Oeu039618.1 Olea europaea HOM05D003748 ORTHO05D004108 2.6e-15 86.3 72 59.7
Sed0020042 Sechium edule HOM05D003748 ORTHO05D004108 2.6e-15 86.3 76 59.2
arahy.Tifrunner.gnm1.ann1.W37VG6 Arachis hypogaea HOM05D003748 ORTHO05D004108 3.4e-15 85.9 69 66.7
Manes.18G101100 Manihot esculenta HOM05D003748 ORTHO05D004108 3.4e-15 85.9 70 61.4
arahy.Tifrunner.gnm1.ann1.2U5UH6 Arachis hypogaea HOM05D003748 ORTHO05D004108 4.4e-15 85.5 69 65.2
Duzib177G0476 Durio zibethinus HOM05D003748 ORTHO05D004108 4.4e-15 85.5 68 63.2
Migut.N03349 Erythranthe guttata HOM05D003748 ORTHO05D004108 4.4e-15 85.5 69 63.8
Lj5g0010218 Lotus japonicus HOM05D003748 ORTHO05D004108 4.4e-15 85.5 63 66.7
Potri.019G083300 Populus trichocarpa HOM05D003748 ORTHO05D004108 4.4e-15 85.5 70 65.7
HanXRQChr09g0260341 Helianthus annuus HOM05D003748 ORTHO05D004108 5.7e-15 85.1 62 67.7
MD05G1041700 Malus domestica HOM05D003748 ORTHO05D004108 5.7e-15 85.1 74 64.9
Psat6g091520 Pisum sativum HOM05D003748 ORTHO05D004108 5.7e-15 85.1 72 59.7
HPP92_003143 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.7e-15 85.1 74 58.1
HPP92_003146 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.7e-15 85.1 74 58.1
CDE08G0273 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 7.5e-15 84.7 79 63.3
MELO3C024124.2 Cucumis melo HOM05D003748 ORTHO05D004108 7.5e-15 84.7 68 63.2
DCAR_014361 Daucus carota HOM05D003748 ORTHO05D004108 7.5e-15 84.7 72 63.9
FAN14G5726 Fragaria x ananassa HOM05D003748 ORTHO05D004108 7.5e-15 84.7 76 61.8
Gohir.A13G121200 Gossypium hirsutum HOM05D003748 ORTHO05D004108 7.5e-15 84.7 68 61.8
unitig_61.g26074 Utricularia gibba HOM05D003748 ORTHO05D004108 7.5e-15 84.7 76 61.8
BcaB05g24695 Brassica carinata HOM05D003748 ORTHO05D004108 9.8e-15 84.3 76 59.2
ClCG09G010270 Citrullus lanatus HOM05D003748 ORTHO05D004108 9.8e-15 84.3 63 66.7
Glyma.02G158200 Glycine max HOM05D003748 ORTHO05D004108 9.8e-15 84.3 61 67.2
VMungo0720G2071 Vigna mungo HOM05D003748 ORTHO05D004108 9.8e-15 84.3 63 63.5
CSS0008856 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 1.3e-14 84.0 63 63.5
FvH4_6g27290 Fragaria vesca HOM05D003748 ORTHO05D004108 1.3e-14 84.0 76 61.8
FAN09G3472 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.3e-14 84.0 76 61.8
Sabra13G0095600 Salix brachista HOM05D003748 ORTHO05D004108 1.3e-14 84.0 61 68.9
CAN.G199.10 Capsicum annuum HOM05D003748 ORTHO05D004108 1.7e-14 83.6 76 61.8
CsaV3_7G024420 Cucumis sativus L. HOM05D003748 ORTHO05D004108 1.7e-14 83.6 69 60.9
FAN02G1714 Fragaria x ananassa HOM05D001133 ORTHO05D004108 1.7e-14 83.6 74 63.5
Haze_22521 Corylus avellana HOM05D003748 ORTHO05D004108 2.2e-14 83.2 68 60.3
Phvul.007G245700 Phaseolus vulgaris HOM05D003748 ORTHO05D004108 2.2e-14 83.2 73 60.3
RcHm_v2.0_Chr2g0129441 Rosa chinensis HOM05D003748 ORTHO05D004108 2.2e-14 83.2 76 60.5
GSVIVG01012792001 Vitis vinifera HOM05D003748 ORTHO05D004108 2.2e-14 83.2 75 61.3
CANSAT64G1217 Cannabis sativa HOM05D003748 ORTHO05D004108 2.8e-14 82.8 76 60.5
COL.COLO4_04234 Corchorus olitorius HOM05D003748 ORTHO05D004108 2.8e-14 82.8 63 66.7
FAN05G3939 Fragaria x ananassa HOM05D003748 ORTHO05D004108 2.8e-14 82.8 76 60.5
MBI16_g07669_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 2.8e-14 82.8 80 62.5
MD10G1048200 Malus domestica HOM05D003748 ORTHO05D004108 2.8e-14 82.8 74 60.8
THA.LOC104800113 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 2.8e-14 82.8 74 60.8
THA.LOC104809742 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 2.8e-14 82.8 76 59.2
TPR.G22711 Trifolium pratense HOM05D003748 ORTHO05D004108 2.8e-14 82.8 75 58.7
arahy.Tifrunner.gnm1.ann1.14DQKS Arachis hypogaea HOM05D003748 ORTHO05D004108 3.7e-14 82.4 65 61.5
Carub.0002s1873 Capsella rubella HOM05D003748 ORTHO05D004108 3.7e-14 82.4 77 57.1
Oeu038195.1 Olea europaea HOM05D003748 ORTHO05D004108 3.7e-14 82.4 66 62.1
Prupe.8G057500 Prunus persica HOM05D003748 ORTHO05D004108 3.7e-14 82.4 74 60.8
AL2G31560 Arabidopsis lyrata HOM05D003748 ORTHO05D004108 4.8e-14 82.0 77 57.1
CiPaw.07G159900 Carya illinoinensis HOM05D003748 ORTHO05D004108 4.8e-14 82.0 68 61.8
Manes.02G192300 Manihot esculenta HOM05D003748 ORTHO05D004108 4.8e-14 82.0 72 58.3
AT1G71950 Arabidopsis thaliana HOM05D003748 ORTHO05D004108 6.3e-14 81.6 70 58.6
CDE06G2501 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 6.3e-14 81.6 79 63.3
PSO017G4343 Papaver somniferum HOM05D003748 ORTHO05D004108 6.3e-14 81.6 62 64.5
PSO063G2175 Papaver somniferum HOM05D003748 ORTHO05D004108 6.3e-14 81.6 62 64.5
arahy.Tifrunner.gnm1.ann1.V86M3D Arachis hypogaea HOM05D003748 ORTHO05D004108 8.3e-14 81.3 75 54.7
A02p17590 Brassica napus HOM05D003748 ORTHO05D004108 8.3e-14 81.3 101 48.5
BraA02t06805Z Brassica rapa HOM05D003748 ORTHO05D004108 8.3e-14 81.3 101 48.5
Cfa013847 Carpinus fangiana HOM05D003748 ORTHO05D004108 8.3e-14 81.3 70 57.1
Aqoxy5G02591 Aquilegia oxysepala HOM05D003748 ORTHO05D004108 1.1e-13 80.9 76 59.2
BcaC03g15314 Brassica carinata HOM05D003748 ORTHO05D004108 1.4e-13 80.5 74 59.5
C02p29240 Brassica napus HOM05D003748 ORTHO05D004108 1.4e-13 80.5 74 59.5
BolC2t08974H Brassica oleracea HOM05D003748 ORTHO05D004108 1.4e-13 80.5 74 59.5
MELO3C028637.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.4e-13 80.5 61 65.6
Medtr1g050640 Medicago truncatula HOM05D003748 ORTHO05D004108 1.4e-13 80.5 63 61.9
SGA_v2.0_scaffold25G11069 Striga asiatica HOM05D003748 ORTHO05D004108 1.4e-13 80.5 68 61.8
TWI74G0020 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 1.4e-13 80.5 70 60.0
Peaxi162Scf00268g01130 Petunia axillaris HOM05D003748 ORTHO05D004108 1.8e-13 80.1 73 58.9
Cc10_g10370 Coffea canephora HOM05D003748 ORTHO05D004108 2.4e-13 79.7 74 56.8
Thhalv10019318m.g Eutrema salsugineum HOM05D003748 ORTHO05D004108 2.4e-13 79.7 76 56.6
Lalb_Chr19g0129451 Lupinus albus HOM05D003748 ORTHO05D004108 2.4e-13 79.7 63 61.9
BcaC08g46636 Brassica carinata HOM05D003748 ORTHO05D004108 3.1e-13 79.3 74 56.8
C06p46040 Brassica napus HOM05D003748 ORTHO05D004108 3.1e-13 79.3 74 56.8
BolC6t39656H Brassica oleracea HOM05D003748 ORTHO05D004108 3.1e-13 79.3 74 56.8
ATR0584G219 Amborella trichopoda HOM05D003748 ORTHO05D004108 4.1e-13 79.0 74 62.2
Ca_02751_v3 Cicer arietinum L. HOM05D003748 ORTHO05D004108 4.1e-13 79.0 75 56.0
Lj7A290T41 Lonicera japonica HOM05D003748 ORTHO05D004108 5.4e-13 78.6 70 58.6
Lalb_Chr19g0129441 Lupinus albus HOM05D003748 ORTHO05D004108 5.4e-13 78.6 63 63.5
BcaB03g14916 Brassica carinata HOM05D003748 ORTHO05D004108 9.1e-13 77.8 74 55.4
QL02p033706 Quercus lobata HOM05D003748 ORTHO05D004108 9.1e-13 77.8 72 56.9
Sabra11G0049800 Salix brachista HOM05D003748 ORTHO05D004108 9.1e-13 77.8 76 55.3
A07p38120 Brassica napus HOM05D003748 ORTHO05D004108 1.2e-12 77.4 74 55.4
BraA07t31377Z Brassica rapa HOM05D003748 ORTHO05D004108 1.2e-12 77.4 74 55.4
Sp5g27020 Schrenkiella parvula HOM05D003748 ORTHO05D004108 1.2e-12 77.4 70 58.6
TWI53G0775 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 1.2e-12 77.4 70 58.6
HPP92_000073 Vanilla planifolia HOM05D003748 ORTHO05D004108 1.2e-12 77.4 68 58.8
Peaxi162Scf00560g00736 Petunia axillaris HOM05D003748 ORTHO05D004108 1.6e-12 77.0 62 62.9
Sopen06g023850 Solanum pennellii HOM05D003748 ORTHO05D004108 1.6e-12 77.0 72 61.1
PGSC0003DMG400026076 Solanum tuberosum HOM05D003748 ORTHO05D004108 1.6e-12 77.0 76 52.6
SGA_v2.0_scaffold149G36586 Striga asiatica HOM05D003748 ORTHO05D004108 1.6e-12 77.0 69 62.3
Aa31LG4G8670 Aethionema arabicum HOM05D003748 ORTHO05D004108 2.0e-12 76.6 77 57.1
Cpa.g.sc66.42 Carica papaya HOM05D003748 ORTHO05D004108 2.0e-12 76.6 76 53.9
CARHR064760 Cardamine hirsuta HOM05D003748 ORTHO05D004108 2.7e-12 76.3 74 55.4
ClCG11G008120 Citrullus lanatus HOM05D003748 ORTHO05D004108 2.7e-12 76.3 72 54.2
Ciclev10002870m.g Citrus clementina HOM05D003748 ORTHO05D004108 2.7e-12 76.3 74 55.4
Nitab4.5_0000303g0140 Nicotiana tabacum HOM05D003748 ORTHO05D004108 2.7e-12 76.3 65 61.5
Oeu021207.1 Olea europaea HOM05D003748 ORTHO05D004108 2.7e-12 76.3 72 56.9
Sabra10G0094400 Salix brachista HOM05D003748 ORTHO05D004108 2.7e-12 76.3 61 62.3
Sabra19G0072000 Salix brachista HOM05D003748 ORTHO05D004108 2.7e-12 76.3 71 56.3
Sabra11G0052500 Salix brachista HOM05D003748 ORTHO05D004108 3.5e-12 75.9 70 57.1
Atru.chr13.1761_Atru.chr13.1772 Acer truncatum HOM05D003748 ORTHO05D004108 5.9e-12 75.1 74 54.1
MELO3C023644.2 Cucumis melo HOM05D003748 ORTHO05D004108 5.9e-12 75.1 76 50.0
Solyc06g065370.3 Solanum lycopersicum HOM05D003748 ORTHO05D004108 5.9e-12 75.1 71 59.2
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 7.7e-12 74.7 71 56.3
PGSC0003DMG400000891 Solanum tuberosum HOM05D003748 ORTHO05D004108 7.7e-12 74.7 65 55.4
HanXRQChr05g0150261 Helianthus annuus HOM05D003748 ORTHO05D004108 1.0e-11 74.3 74 52.7
Sabra11G0051700 Salix brachista HOM05D000022 ORTHO05D000071 1.0e-11 74.3 71 56.3
Nitab4.5_0000807g0010 Nicotiana tabacum HOM05D003748 ORTHO05D004108 1.3e-11 73.9 65 56.9
Sc23g0001260 Simmondsia chinensis HOM05D003748 ORTHO05D004108 1.3e-11 73.9 64 59.4
ECA232G2068 Erigeron canadensis HOM05D003748 ORTHO05D004108 1.7e-11 73.6 63 60.3
CsaV3_2G033500 Cucumis sativus L. HOM05D003748 ORTHO05D004108 2.2e-11 73.2 63 58.7
HPP92_025042 Vanilla planifolia HOM05D003748 ORTHO05D004108 2.2e-11 73.2 75 53.3
ECA246G4702 Erigeron canadensis HOM05D003748 ORTHO05D004108 2.9e-11 72.8 75 53.3
Nitab4.5_0002500g0020 Nicotiana tabacum HOM05D003748 ORTHO05D004108 2.9e-11 72.8 79 51.9
HanXRQChr05g0150061 Helianthus annuus HOM05D003748 ORTHO05D004108 3.8e-11 72.4 74 51.4
BcaC08g46634 Brassica carinata HOM05D003748 ORTHO05D004108 5.0e-11 72.0 62 58.1
Lsat_1_v5_gn_6_110641 Lactuca sativa HOM05D003748 ORTHO05D004108 5.0e-11 72.0 74 51.4
MD11G1194700 Malus domestica HOM05D003748 ORTHO05D004108 5.0e-11 72.0 77 53.2
CsaV3_7G023810 Cucumis sativus L. HOM05D003748 ORTHO05D004108 8.5e-11 71.2 99 43.4
ATR0620G025 Amborella trichopoda HOM05D003748 ORTHO05D004108 1.1e-10 70.9 69 53.6
MELO3C008123.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.1e-10 70.9 63 57.1
CsaV3_7G024410 Cucumis sativus L. HOM05D003748 ORTHO05D004108 1.1e-10 70.9 74 50.0
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 1.5e-10 70.5 57 59.6
Sed0006671 Sechium edule HOM05D003748 ORTHO05D004108 1.5e-10 70.5 73 57.5
Sabra16G0264300 Salix brachista HOM05D003748 ORTHO05D004108 1.9e-10 70.1 65 60.0
EL10Ac1g00087 Beta vulgaris HOM05D003748 ORTHO05D004108 3.2e-10 69.3 77 54.5
HPP92_001081 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.2e-10 69.3 84 48.8
Zm00001eb289210 Zea mays HOM05D003748 ORTHO05D004108 4.2e-10 68.9 70 48.6
Ciclev10007132m.g Citrus clementina HOM05D003748 ORTHO05D004108 5.5e-10 68.6 56 64.3
Os05g0432700 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 5.5e-10 68.6 70 50.0
PGR042G3867 Punica granatum HOM05D003748 ORTHO05D004108 7.2e-10 68.2 74 47.3
SEGI_17758 Sequoiadendron giganteum HOM05D003748 ORTHO05D004108 1.2e-09 67.4 66 51.5
CSS0005693 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 1.6e-09 67.0 68 57.4
AUR62004641 Chenopodium quinoa HOM05D003748 ORTHO05D004108 1.6e-09 67.0 77 48.1
MELO3C008122.2 Cucumis melo HOM05D001651 ORTHO05D004108 1.6e-09 67.0 74 48.6
Hund16797 Selenicereus undatus HOM05D003748 ORTHO05D004108 2.1e-09 66.6 73 53.4
Sopen11g009560 Solanum pennellii HOM05D003748 ORTHO05D004108 2.7e-09 66.2 65 52.3
AUR62022695 Chenopodium quinoa HOM05D003748 ORTHO05D004108 3.6e-09 65.9 77 48.1
CANSAT56G2356 Cannabis sativa HOM05D003748 ORTHO05D004108 4.7e-09 65.5 67 53.7
Ah.05g178170 Amaranthus hybridus HOM05D003748 ORTHO05D004108 1.0e-08 64.3 64 53.1
Solyc11g018590.1 Solanum lycopersicum HOM05D003748 ORTHO05D004108 1.4e-08 63.9 66 48.5
HPP92_006842 Vanilla planifolia HOM05D003748 ORTHO05D004108 1.4e-08 63.9 64 54.7
Sed0014127 Sechium edule HOM05D003748 ORTHO05D004108 1.8e-08 63.5 64 56.2
ClCG09G010610 Citrullus lanatus HOM05D003748 ORTHO05D004108 5.2e-08 62.0 64 51.6
FvH4_6g27310 Fragaria vesca HOM05D003748 ORTHO05D004108 5.2e-08 62.0 61 55.7
FAN02G3522 Fragaria x ananassa HOM05D003748 ORTHO05D004108 5.2e-08 62.0 61 55.7
FAN14G4728 Fragaria x ananassa HOM05D003748 ORTHO05D004108 5.2e-08 62.0 61 55.7
FAN09G2657 Fragaria x ananassa HOM05D003748 ORTHO05D004108 2.6e-07 59.7 61 54.1
CAN.G493.1 Capsicum annuum HOM05D003748 ORTHO05D004108 5.7e-07 58.5 67 46.3
MELO3C024123.2 Cucumis melo HOM05D003748 ORTHO05D004108 9.8e-07 57.8 62 50.0
Zm00001eb306170 Zea mays HOM05D003748 ORTHO05D004108 2.8e-06 56.2 66 50.0


User provided reference genes

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