Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI09_g31924_MAGBIO Magnolia biondii HOM05D001008 ORTHO05D003146 2.8e-70 268.5 134 100.0
MBI04_g31163_MAGBIO Magnolia biondii HOM05D001008 ORTHO05D003146 6.4e-14 81.3 44 93.2
SalBow7G3878 Salvia bowleyana HOM05D001008 ORTHO05D003146 7.8e-12 74.3 45 82.2
Migut.D00963 Erythranthe guttata HOM05D001008 ORTHO05D003146 1.0e-11 73.9 45 77.8
FvH4_6g33660 Fragaria vesca HOM05D001008 ORTHO05D003146 1.0e-11 73.9 45 82.2
FAN02G2785 Fragaria x ananassa HOM05D001008 ORTHO05D003146 1.0e-11 73.9 45 82.2
FAN02G4483 Fragaria x ananassa HOM05D001008 ORTHO05D003146 1.0e-11 73.9 45 82.2
FAN05G3324 Fragaria x ananassa HOM05D001008 ORTHO05D003146 1.0e-11 73.9 45 82.2
FAN09G2120 Fragaria x ananassa HOM05D001008 ORTHO05D003146 1.0e-11 73.9 45 82.2
FAN14G0960 Fragaria x ananassa HOM05D001008 ORTHO05D003146 1.0e-11 73.9 45 82.2
SGA_v2.0_scaffold4G02043 Striga asiatica HOM05D001008 ORTHO05D003146 1.3e-11 73.6 45 80.0
ClCG07G013820 Citrullus lanatus HOM05D001008 ORTHO05D003146 1.7e-11 73.2 77 54.5
Os01g0574600 Oryza sativa ssp. japonica HOM05D001008 ORTHO05D003146 2.3e-11 72.8 92 47.8
CAN.G862.6 Capsicum annuum HOM05D001008 ORTHO05D003146 3.0e-11 72.4 74 55.4
GSVIVG01016871001 Vitis vinifera HOM05D001008 ORTHO05D003146 3.9e-11 72.0 45 77.8
Dinv37904 Davidia involucrata HOM05D001008 ORTHO05D003146 5.1e-11 71.6 74 56.8
Glyma.13G349100 Glycine max HOM05D001008 ORTHO05D003146 5.1e-11 71.6 45 77.8
MD09G1191900 Malus domestica HOM05D001008 ORTHO05D003146 5.1e-11 71.6 92 48.9
Rhsim12G0207300 Rhododendron simsii HOM05D001008 ORTHO05D003146 5.1e-11 71.6 45 77.8
RcHm_v2.0_Chr2g0143571 Rosa chinensis HOM05D001008 ORTHO05D003146 5.1e-11 71.6 45 80.0
Hund20832 Selenicereus undatus HOM05D001008 ORTHO05D003146 5.1e-11 71.6 74 55.4
PGSC0003DMG400002581 Solanum tuberosum HOM05D001008 ORTHO05D003146 5.1e-11 71.6 45 75.6
TAR624G1443 Trochodendron aralioides HOM05D001008 ORTHO05D003146 5.1e-11 71.6 45 77.8
Cc04_g01810 Coffea canephora HOM05D001008 ORTHO05D003146 6.6e-11 71.2 45 75.6
Lsat_1_v5_gn_5_135081 Lactuca sativa HOM05D001008 ORTHO05D003146 6.6e-11 71.2 45 80.0
Peaxi162Scf00038g01645 Petunia axillaris HOM05D001008 ORTHO05D003146 6.6e-11 71.2 45 75.6
Solyc03g121720.2 Solanum lycopersicum HOM05D001008 ORTHO05D003146 6.6e-11 71.2 45 75.6
Sopen03g040530 Solanum pennellii HOM05D001008 ORTHO05D003146 6.6e-11 71.2 45 75.6
TWI79G1331 Tripterygium wilfordii HOM05D001008 ORTHO05D003146 6.6e-11 71.2 74 54.1
Ca_01209_v3 Cicer arietinum L. HOM05D001008 ORTHO05D003146 8.6e-11 70.9 45 75.6
HanXRQChr10g0312421 Helianthus annuus HOM05D001008 ORTHO05D003146 8.6e-11 70.9 45 80.0
Sed0008114 Sechium edule HOM05D001008 ORTHO05D003146 8.6e-11 70.9 45 77.8
Sed0018794 Sechium edule HOM05D001008 ORTHO05D003146 8.6e-11 70.9 45 75.6
vmacro17033 Vaccinium macrocarpon HOM05D001008 ORTHO05D003146 8.6e-11 70.9 45 77.8
Aqoxy7G01188 Aquilegia oxysepala HOM05D001008 ORTHO05D003146 1.1e-10 70.5 44 75.0
EL10Ac7g16357 Beta vulgaris HOM05D001008 ORTHO05D003146 1.1e-10 70.5 74 55.4
DCAR_007628 Daucus carota HOM05D001008 ORTHO05D003146 1.1e-10 70.5 74 54.1
Oeu039952.1 Olea europaea HOM05D001008 ORTHO05D003146 1.1e-10 70.5 45 77.8
PGR119G0450 Punica granatum HOM05D001008 ORTHO05D003146 1.1e-10 70.5 45 73.3
MSTRG.9501 Avicennia marina HOM05D001008 ORTHO05D003146 1.5e-10 70.1 45 75.6
Lj3g0027689 Lotus japonicus HOM05D001008 ORTHO05D003146 1.5e-10 70.1 45 73.3
CSS0040901 Camellia sinensis var. sinensis HOM05D001008 ORTHO05D003146 1.9e-10 69.7 45 75.6
Ciclev10025937m.g Citrus clementina HOM05D001008 ORTHO05D003146 1.9e-10 69.7 45 75.6
MELO3C013091.2 Cucumis melo HOM05D001008 ORTHO05D003146 1.9e-10 69.7 45 75.6
CsaV3_3G043770 Cucumis sativus L. HOM05D001008 ORTHO05D003146 1.9e-10 69.7 45 75.6
ECA234G0489 Erigeron canadensis HOM05D001008 ORTHO05D003146 1.9e-10 69.7 45 77.8
Lalb_Chr14g0372761 Lupinus albus HOM05D001008 ORTHO05D003146 1.9e-10 69.7 45 73.3
Sabra03G0023600 Salix brachista HOM05D001215 ORTHO05D003146 1.9e-10 69.7 61 59.0
TPR.G6595 Trifolium pratense HOM05D001008 ORTHO05D003146 1.9e-10 69.7 45 73.3
Cfa003573 Carpinus fangiana HOM05D001008 ORTHO05D003146 2.5e-10 69.3 45 77.8
COL.COLO4_30658 Corchorus olitorius HOM05D001008 ORTHO05D003146 2.5e-10 69.3 45 71.1
Haze_15973 Corylus avellana HOM05D001008 ORTHO05D003146 2.5e-10 69.3 45 77.8
MELO3C013093.2 Cucumis melo HOM05D001008 ORTHO05D003146 2.5e-10 69.3 45 75.6
Duzib192G1021 Durio zibethinus HOM05D001008 ORTHO05D003146 2.5e-10 69.3 45 71.1
Phvul.005G158300 Phaseolus vulgaris HOM05D001008 ORTHO05D003146 2.5e-10 69.3 45 73.3
Psat5g292160 Pisum sativum HOM05D001008 ORTHO05D003146 2.5e-10 69.3 45 71.1
Sc12g0010300 Simmondsia chinensis HOM05D001008 ORTHO05D003146 2.5e-10 69.3 45 75.6
Eucgr.F03139 Eucalyptus grandis HOM05D001008 ORTHO05D003146 3.3e-10 68.9 45 73.3
Nitab4.5_0001295g0230 Nicotiana tabacum HOM05D001008 ORTHO05D003146 3.3e-10 68.9 45 73.3
Actinidia09037 Actinidia chinensis HOM05D001008 ORTHO05D003146 4.3e-10 68.6 45 75.6
Gohir.A10G059300 Gossypium hirsutum HOM05D001008 ORTHO05D003146 4.3e-10 68.6 45 71.1
Gorai.011G065100 Gossypium raimondii HOM05D001008 ORTHO05D003146 4.3e-10 68.6 45 71.1
HPP92_022909 Vanilla planifolia HOM05D001008 ORTHO05D003146 4.3e-10 68.6 45 75.6
arahy.Tifrunner.gnm1.ann1.RQ1G66 Arachis hypogaea HOM05D001008 ORTHO05D003146 5.6e-10 68.2 74 52.7
CiPaw.01G223700 Carya illinoinensis HOM05D001008 ORTHO05D003146 5.6e-10 68.2 74 54.1
Potri.003G040800 Populus trichocarpa HOM05D001008 ORTHO05D003146 5.6e-10 68.2 45 73.3
Zm00001eb160170 Zea mays HOM05D001008 ORTHO05D003146 5.6e-10 68.2 92 44.6
AUR62009841 Chenopodium quinoa HOM05D001008 ORTHO05D003146 7.3e-10 67.8 44 75.0
CsaV3_3G043780 Cucumis sativus L. HOM05D001008 ORTHO05D003146 7.3e-10 67.8 45 73.3
Actinidia26053 Actinidia chinensis HOM05D001008 ORTHO05D003146 9.6e-10 67.4 45 73.3
Gohir.D10G060900 Gossypium hirsutum HOM05D001008 ORTHO05D003146 9.6e-10 67.4 45 68.9
Lj5A43T68 Lonicera japonica HOM05D001008 ORTHO05D003146 9.6e-10 67.4 45 73.3
Manes.11G025200 Manihot esculenta HOM05D001008 ORTHO05D003146 9.6e-10 67.4 74 52.7
Medtr2g099910 Medicago truncatula HOM05D001008 ORTHO05D003146 9.6e-10 67.4 45 71.1
Nn8g38818 Nelumbo nucifera HOM05D001008 ORTHO05D003146 9.6e-10 67.4 45 71.1
Prupe.3G048100 Prunus persica HOM05D001008 ORTHO05D003146 9.6e-10 67.4 45 71.1
Sp1g15760 Schrenkiella parvula HOM05D001008 ORTHO05D003146 9.6e-10 67.4 45 71.1
CANSAT56G2572 Cannabis sativa HOM05D001008 ORTHO05D003146 1.2e-09 67.0 73 53.4
QL05p011666 Quercus lobata HOM05D001008 ORTHO05D003146 1.6e-09 66.6 45 73.3
Aa31LG7G2490 Aethionema arabicum HOM05D001008 ORTHO05D003146 2.1e-09 66.2 45 68.9
BcaB07g34022 Brassica carinata HOM05D001008 ORTHO05D003146 2.1e-09 66.2 45 68.9
A06p13550 Brassica napus HOM05D001008 ORTHO05D003146 2.1e-09 66.2 45 68.9
C05p16060 Brassica napus HOM05D001008 ORTHO05D003146 2.1e-09 66.2 45 68.9
BolC5t30307H Brassica oleracea HOM05D001008 ORTHO05D003146 2.1e-09 66.2 45 68.9
BraA06t24507Z Brassica rapa HOM05D001008 ORTHO05D003146 2.1e-09 66.2 45 68.9
CARHR018260 Cardamine hirsuta HOM05D001008 ORTHO05D003146 2.8e-09 65.9 45 68.9
VMungo1080G1613 Vigna mungo HOM05D001008 ORTHO05D003146 2.8e-09 65.9 45 71.1
QL05p011285 Quercus lobata HOM05D001008 ORTHO05D003146 3.6e-09 65.5 45 71.1
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 4.7e-09 65.1 74 51.4
ATR0026G044 Amborella trichopoda HOM05D001008 ORTHO05D003146 4.7e-09 65.1 45 71.1
unitig_899.g14769 Utricularia gibba HOM05D001008 ORTHO05D003146 6.2e-09 64.7 45 68.9
Thhalv10008217m.g Eutrema salsugineum HOM05D001008 ORTHO05D003146 8.1e-09 64.3 44 68.2
AL1G29980 Arabidopsis lyrata HOM05D001008 ORTHO05D003146 1.1e-08 63.9 45 66.7
BcaC05g25687 Brassica carinata HOM05D001008 ORTHO05D003146 1.1e-08 63.9 45 66.7
Carub.0001s1739 Capsella rubella HOM05D001008 ORTHO05D003146 1.1e-08 63.9 45 66.7
PSO832G1576 Papaver somniferum HOM05D001008 ORTHO05D003146 1.1e-08 63.9 45 66.7
AT1G17650 Arabidopsis thaliana HOM05D001008 ORTHO05D003146 1.4e-08 63.5 45 66.7
PSO063G2064 Papaver somniferum HOM05D001008 ORTHO05D003146 1.4e-08 63.5 45 64.4
arahy.Tifrunner.gnm1.ann1.KWZP7D Arachis hypogaea HOM05D001008 ORTHO05D003146 2.4e-08 62.8 74 50.0
SEGI_08889 Sequoiadendron giganteum HOM05D001008 ORTHO05D003146 6.8e-08 61.2 74 43.2
MBI16_g21186_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 2.0e-07 59.7 32 84.4
AagrBONN_evm.TU.Sc2ySwM_228.1704 Anthoceros agrestis HOM05D001008 ORTHO05D003146 7.6e-07 57.8 75 42.7
MBI19_g27529_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 1.7e-06 56.6 39 66.7
Nitab4.5_0009462g0020 Nicotiana tabacum HOM05D001008 ORTHO05D003146 1.7e-06 56.6 76 46.1


User provided reference genes

Program Settings