Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 1.3e-302 1042.3 554 100.0
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 3.5e-215 751.9 556 72.7
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 7.0e-208 727.6 560 70.9
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 5.4e-200 701.4 562 68.3
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 3.7e-193 678.7 558 66.3
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 7.1e-192 674.5 560 66.4
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 1.2e-188 663.7 550 65.1
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 1.1e-187 660.6 547 65.4
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.2e-186 657.1 563 64.3
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 8.4e-185 651.0 547 64.4
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 8.4e-185 651.0 559 63.3
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 3.2e-184 649.0 552 63.4
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 5.4e-184 648.3 552 65.8
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 7.8e-183 644.4 545 63.5
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.3e-182 643.7 551 64.8
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 1.7e-182 643.3 555 64.5
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.7e-182 643.3 555 64.5
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 2.3e-182 642.9 553 66.2
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 3.0e-182 642.5 559 63.3
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 6.6e-182 641.3 551 63.7
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 8.7e-182 641.0 550 62.7
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 2.5e-181 639.4 557 62.8
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 4.3e-181 638.6 561 66.0
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.6e-180 636.7 554 63.5
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 2.1e-180 636.3 552 62.9
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 2.8e-180 636.0 563 62.0
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 3.6e-180 635.6 546 67.0
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 3.6e-180 635.6 553 65.8
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 6.2e-180 634.8 552 63.4
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.2e-180 634.8 555 64.9
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 8.1e-180 634.4 555 64.7
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 1.8e-179 633.3 550 62.4
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.8e-179 633.3 553 62.6
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.1e-179 632.5 555 64.7
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 6.9e-179 631.3 560 64.5
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 6.9e-179 631.3 551 61.2
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.5e-178 630.2 576 62.3
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 3.4e-178 629.0 562 61.6
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 7.6e-178 627.9 547 62.5
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 7.6e-178 627.9 560 64.6
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.3e-177 627.1 560 64.5
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.3e-177 627.1 558 62.9
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 2.2e-177 626.3 566 60.8
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.9e-177 625.9 551 63.0
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 3.8e-177 625.5 548 62.4
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 4.9e-177 625.2 525 65.7
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 6.4e-177 624.8 548 62.8
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.1e-176 624.0 560 62.1
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.4e-176 623.6 543 62.1
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 3.2e-176 622.5 563 60.4
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 3.2e-176 622.5 551 62.4
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 5.4e-176 621.7 549 61.2
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 5.4e-176 621.7 585 60.3
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 9.3e-176 620.9 548 61.7
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.2e-175 620.5 549 61.2
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 2.1e-175 619.8 560 61.6
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 2.1e-175 619.8 562 61.0
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.7e-175 619.4 546 61.7
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 3.5e-175 619.0 567 59.6
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 6.0e-175 618.2 559 60.1
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 6.0e-175 618.2 562 61.4
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 7.8e-175 617.8 545 63.1
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.3e-174 617.1 536 62.5
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.3e-174 617.1 580 60.0
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 6.6e-174 614.8 533 62.9
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 6.6e-174 614.8 545 60.6
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 4.3e-173 612.1 530 62.1
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 1.3e-172 610.5 565 60.9
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 1.6e-172 610.1 531 64.8
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.1e-172 609.8 548 60.0
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 2.1e-172 609.8 558 59.5
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.8e-172 609.4 553 63.1
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 3.6e-172 609.0 544 61.0
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.4e-171 607.1 588 58.3
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 2.4e-171 606.3 545 62.0
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 3.1e-171 605.9 584 59.1
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 5.3e-171 605.1 547 61.2
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 9.0e-171 604.4 552 60.9
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 9.0e-171 604.4 562 58.9
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.5e-170 603.6 546 61.2
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 1.5e-170 603.6 546 61.2
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 2.0e-170 603.2 555 60.9
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 1.3e-169 600.5 588 59.7
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 3.8e-169 599.0 564 58.5
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 5.4e-168 595.1 557 58.0
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 9.3e-168 594.3 555 59.3
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 2.1e-167 593.2 552 59.6
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 3.9e-166 589.0 569 58.9
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.1e-165 587.4 564 59.8
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 1.5e-165 587.0 608 55.3
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 8.1e-164 581.3 574 58.7
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 2.6e-162 576.2 573 56.7
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 4.9e-161 572.0 513 59.8
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 2.1e-159 566.6 462 63.9
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.1e-155 554.3 591 55.0
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 1.6e-151 540.4 454 63.4
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 5.1e-134 482.3 524 55.5
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.1e-123 448.0 505 52.5
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 7.0e-123 445.3 327 72.5
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.0e-117 427.2 308 71.4
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 3.7e-116 422.9 478 49.0
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 2.7e-114 416.8 393 60.3
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.3e-113 414.5 306 70.6
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.9e-112 410.6 519 45.7
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 5.4e-107 392.5 441 49.9
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 1.8e-102 377.5 276 72.1
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 3.0e-102 376.7 357 58.5
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 3.4e-101 373.2 356 58.7
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.5e-96 357.8 395 51.6
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 4.3e-96 356.3 349 56.7
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 4.7e-95 352.8 349 56.4
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 6.1e-95 352.4 303 60.7
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 8.9e-94 348.6 577 37.8
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 7.5e-93 345.5 303 60.1
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 2.4e-91 340.5 338 55.9
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 4.6e-90 336.3 397 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 5.0e-89 332.8 584 37.3
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 8.3e-84 315.5 556 37.2
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 3.1e-78 297.0 259 63.3
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 3.3e-72 276.9 274 57.3
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 3.3e-64 250.4 177 73.4
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 8.7e-49 199.1 189 56.1
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.8e-46 191.4 555 29.9
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 1.2e-45 188.7 186 59.1
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 2.5e-43 181.0 260 45.4
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.2e-37 162.2 124 70.2
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 1.6e-34 151.8 421 30.2
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 1.8e-33 148.3 446 26.7
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.8e-33 148.3 376 27.1
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.0e-28 132.5 107 67.3
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.5e-27 127.9 364 28.8
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.2e-27 127.5 152 48.0
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 7.9e-26 122.9 339 26.8
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.4e-25 122.1 128 51.6
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.8e-25 121.7 82 70.7
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 8.8e-25 119.4 90 68.9
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.6e-18 98.6 164 45.7
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.4e-17 95.5 449 24.1
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 2.6e-16 91.3 511 23.7
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 2.5e-11 74.7 117 43.6
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.2e-10 72.4 379 22.4
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 1.1e-08 65.9 50 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 2.8e-07 61.2 237 29.5
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 1.1e-06 59.3 217 26.7
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 1.1e-06 59.3 220 25.0
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 2.4e-06 58.2 220 25.5
RcHm_v2.0_Chr4g0435621 Rosa chinensis HOM05D005032 ORTHO05D006268 7.0e-06 56.6 222 24.8


User provided reference genes

Program Settings