Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 5.5e-195 684.1 344 100.0
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 9.5e-187 656.8 344 93.0
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 6.9e-145 517.7 344 72.4
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 7.1e-142 507.7 343 71.1
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.7e-141 505.8 342 71.9
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 7.9e-141 504.2 345 71.9
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.0e-140 503.8 344 70.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.0e-140 503.8 344 70.6
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.7e-140 503.1 345 71.0
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 3.9e-140 501.9 347 70.6
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 5.1e-140 501.5 344 70.9
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.1e-140 501.5 344 70.1
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.6e-140 501.1 344 70.1
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.5e-139 500.0 344 70.1
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.5e-139 500.0 343 70.0
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 3.3e-139 498.8 345 71.6
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 5.6e-139 498.0 344 69.5
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.6e-139 498.0 344 70.3
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 9.6e-139 497.3 343 70.0
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.6e-138 496.5 340 71.5
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 2.1e-138 496.1 347 69.7
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.8e-138 495.7 345 69.3
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.8e-138 495.7 344 69.8
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.6e-138 495.4 343 70.8
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.6e-138 495.4 343 70.8
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 3.6e-138 495.4 344 70.3
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 8.1e-138 494.2 345 69.3
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 8.1e-138 494.2 344 69.8
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 8.1e-138 494.2 345 71.9
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.1e-137 492.3 344 69.8
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.3e-137 491.5 344 70.1
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 6.9e-137 491.1 342 70.2
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 6.9e-137 491.1 344 69.8
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 9.0e-137 490.7 344 68.3
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.0e-136 489.6 345 68.7
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 2.0e-136 489.6 344 68.9
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 2.2e-135 486.1 345 68.4
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 2.9e-135 485.7 345 67.8
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 3.8e-135 485.3 344 68.9
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 3.8e-135 485.3 345 69.9
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 4.9e-135 485.0 344 67.4
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 6.4e-135 484.6 345 68.1
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.9e-134 483.0 345 67.8
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.4e-134 482.6 345 68.1
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.4e-134 482.6 344 67.7
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 5.4e-134 481.5 344 69.2
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.1e-133 479.6 345 66.7
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 4.6e-133 478.4 345 67.5
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 4.6e-133 478.4 345 67.5
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 6.0e-133 478.0 344 68.6
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 6.0e-133 478.0 346 69.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 6.0e-133 478.0 340 68.5
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.3e-132 476.1 345 67.2
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 5.1e-132 474.9 343 67.3
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 6.7e-132 474.6 344 67.4
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 1.9e-131 473.0 345 67.8
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 4.3e-131 471.9 336 67.6
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 7.4e-131 471.1 344 67.2
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.6e-130 469.9 342 67.8
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.1e-130 469.5 344 66.9
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.1e-130 469.5 342 66.4
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 3.7e-130 468.8 331 68.9
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.1e-129 467.2 342 67.5
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.4e-129 466.8 345 67.2
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 1.4e-129 466.8 342 65.8
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.8e-129 466.5 337 68.0
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 3.1e-129 465.7 344 66.9
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 4.0e-129 465.3 344 64.0
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 4.0e-129 465.3 339 68.1
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 5.3e-129 464.9 346 68.5
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 9.0e-129 464.2 343 67.6
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.2e-128 463.8 344 66.9
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.2e-128 463.8 345 66.4
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.0e-127 460.7 341 67.2
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 2.2e-127 459.5 345 65.8
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 6.5e-127 458.0 344 65.4
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 8.4e-127 457.6 354 64.7
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 8.4e-127 457.6 339 69.6
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.4e-126 456.8 346 66.2
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 1.4e-126 456.8 338 66.0
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.2e-126 455.3 344 66.6
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 4.2e-126 455.3 337 66.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 5.5e-126 454.9 341 64.5
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.2e-125 453.8 344 65.7
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.6e-125 453.4 345 66.1
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.0e-124 450.7 345 64.3
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 3.9e-124 448.7 344 65.1
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.1e-123 447.2 337 64.7
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 2.5e-123 446.0 338 67.5
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 3.7e-122 442.2 320 66.2
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 3.7e-122 442.2 338 66.0
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.6e-120 436.0 341 62.8
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 5.8e-120 434.9 342 62.9
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.8e-119 432.2 336 64.6
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.4e-118 430.3 342 63.7
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 4.2e-118 428.7 338 65.4
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.7e-117 426.0 344 62.5
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 8.7e-116 421.0 335 61.2
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 8.7e-116 421.0 337 60.8
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.5e-115 420.2 335 61.2
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 4.3e-115 418.7 345 59.4
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.6e-114 416.8 345 61.4
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 6.3e-114 414.8 336 61.0
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 6.9e-113 411.4 340 59.7
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.3e-111 407.1 344 58.7
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.3e-111 407.1 337 64.4
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.7e-111 406.8 337 64.1
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 2.9e-111 406.0 326 63.2
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 2.9e-111 406.0 333 65.2
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.1e-110 404.1 335 64.2
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 3.2e-110 402.5 339 62.8
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 4.2e-110 402.1 381 55.4
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 4.6e-109 398.7 345 58.0
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.3e-106 390.6 296 64.9
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.8e-106 389.4 297 66.7
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.8e-106 389.4 254 72.0
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.9e-100 369.0 342 57.6
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.6e-99 366.3 322 57.8
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.1e-91 340.9 264 64.0
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.2e-88 330.9 344 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.1e-86 324.3 392 45.9
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.1e-85 320.1 348 53.7
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.8e-84 317.0 347 52.7
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.4e-81 307.4 360 47.5
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 3.6e-77 292.7 402 45.0
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.5e-75 287.3 283 52.7
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 3.4e-75 286.2 408 41.7
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 3.7e-74 282.7 224 63.4
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.9e-74 282.3 216 64.8
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 6.3e-74 282.0 322 50.6
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.1e-73 281.2 191 69.1
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 7.8e-64 248.4 257 51.8
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 2.3e-60 236.9 333 40.8
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 4.0e-60 236.1 194 56.7
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 2.7e-56 223.4 155 68.4
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 8.6e-47 191.8 143 63.6
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.5e-46 191.0 381 36.2
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.2e-45 188.0 155 61.3
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 6.2e-45 185.7 254 43.3
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 9.9e-43 178.3 138 63.8
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 9.9e-43 178.3 138 63.8
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 8.1e-37 158.7 346 33.2
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 4.9e-34 149.4 140 52.9
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.5e-30 137.9 91 69.2
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 3.1e-28 130.2 144 48.6
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 6.2e-21 105.9 414 25.8
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 6.9e-20 102.4 116 46.6
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 9.0e-20 102.1 71 64.8
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 9.3e-17 92.0 76 57.9
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.4e-11 73.6 39 84.6
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 6.5e-10 69.3 71 49.3
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.0e-07 60.5 47 66.0
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 3.3e-06 57.0 75 42.7
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 9.6e-06 55.5 34 70.6


User provided reference genes

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