Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 6.3e-82 307.4 153 100.0
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.8e-28 129.8 78 84.6
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.2e-27 127.1 78 82.1
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 1.2e-27 127.1 78 80.8
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 2.6e-27 125.9 84 75.0
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 3.4e-27 125.6 78 82.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 3.4e-27 125.6 78 79.5
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 4.4e-27 125.2 78 80.8
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.4e-27 125.2 78 82.1
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.4e-27 125.2 78 82.1
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 5.8e-27 124.8 84 75.0
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 7.5e-27 124.4 78 82.1
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 9.8e-27 124.0 78 80.8
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 9.8e-27 124.0 78 80.8
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 9.8e-27 124.0 114 58.8
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.3e-26 123.6 78 80.8
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.2e-26 122.9 81 77.8
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 2.2e-26 122.9 78 80.8
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 2.9e-26 122.5 78 79.5
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 2.9e-26 122.5 78 75.6
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 3.7e-26 122.1 78 79.5
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.7e-26 122.1 78 78.2
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 3.7e-26 122.1 78 79.5
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 4.9e-26 121.7 78 76.9
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 4.9e-26 121.7 78 78.2
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 4.9e-26 121.7 78 79.5
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 4.9e-26 121.7 78 79.5
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 4.9e-26 121.7 78 79.5
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 8.3e-26 120.9 83 74.7
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 8.3e-26 120.9 78 76.9
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.1e-25 120.6 78 78.2
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.1e-25 120.6 78 76.9
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 1.1e-25 120.6 78 75.6
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 1.1e-25 120.6 78 79.5
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.4e-25 120.2 78 76.9
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.4e-25 120.2 78 78.2
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.4e-25 120.2 78 76.9
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.9e-25 119.8 78 75.6
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.9e-25 119.8 78 79.5
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.9e-25 119.8 78 78.2
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 2.4e-25 119.4 78 76.9
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 2.4e-25 119.4 78 76.9
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 3.2e-25 119.0 78 78.2
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 3.2e-25 119.0 78 78.2
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 4.1e-25 118.6 78 79.5
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 4.1e-25 118.6 78 75.6
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 5.4e-25 118.2 78 73.1
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 5.4e-25 118.2 78 73.1
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 5.4e-25 118.2 78 74.4
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 5.4e-25 118.2 78 76.9
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 9.2e-25 117.5 78 74.4
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-24 117.1 77 76.6
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.2e-24 117.1 78 76.9
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.6e-24 116.7 78 75.6
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.6e-24 116.7 78 74.4
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 2.7e-24 115.9 78 75.6
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 3.5e-24 115.5 78 73.1
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 3.5e-24 115.5 78 75.6
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 4.6e-24 115.2 78 73.1
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 6.0e-24 114.8 78 74.4
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 7.8e-24 114.4 78 73.1
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.0e-23 114.0 78 73.1
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.0e-23 114.0 78 71.8
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.0e-23 114.0 78 73.1
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.0e-23 114.0 78 71.8
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.0e-23 114.0 78 73.1
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 1.0e-23 114.0 78 73.1
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.0e-23 114.0 81 74.1
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.0e-23 114.0 81 71.6
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-23 113.6 78 71.8
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-23 113.6 78 73.1
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 1.3e-23 113.6 78 74.4
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.3e-23 113.6 78 73.1
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 3.0e-23 112.5 78 73.1
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.0e-23 112.5 78 74.4
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 3.0e-23 112.5 78 71.8
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 3.0e-23 112.5 78 69.2
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 3.9e-23 112.1 78 71.8
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 5.0e-23 111.7 78 71.8
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 5.0e-23 111.7 78 71.8
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 5.0e-23 111.7 78 71.8
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 5.0e-23 111.7 78 71.8
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 6.6e-23 111.3 81 71.6
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 8.6e-23 110.9 81 70.4
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 8.6e-23 110.9 78 70.5
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.1e-22 110.5 78 70.5
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 1.1e-22 110.5 78 70.5
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 1.1e-22 110.5 78 73.1
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.9e-22 109.8 78 69.2
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.9e-22 109.8 78 69.2
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.9e-22 109.8 78 67.9
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.9e-22 109.8 78 70.5
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 3.3e-22 109.0 78 70.5
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.3e-22 109.0 78 70.5
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 3.3e-22 109.0 78 69.2
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 4.3e-22 108.6 78 70.5
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 5.6e-22 108.2 78 69.2
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 9.5e-22 107.5 78 66.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.2e-21 107.1 78 69.2
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 2.1e-21 106.3 78 67.9
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 4.7e-21 105.1 78 67.9
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 8.1e-21 104.4 78 67.9
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 8.1e-21 104.4 78 66.7
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.8e-20 103.2 78 67.9
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 3.1e-20 102.4 78 66.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 5.2e-20 101.7 72 70.8
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.6e-19 99.4 78 65.4
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 6.4e-18 94.7 111 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 3.5e-16 89.0 78 60.3
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.6e-16 88.6 86 60.5
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 2.8e-13 79.3 78 52.6
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.8e-13 79.3 78 52.6
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 6.8e-12 74.7 78 51.3
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 8.9e-12 74.3 78 55.1
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-10 70.5 77 53.2
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.4e-09 67.0 73 46.6
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.9e-09 66.6 78 44.9
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 5.4e-09 65.1 78 44.9
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 5.4e-09 65.1 78 48.7
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 2.5e-06 56.2 76 40.8
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 4.3e-06 55.5 64 46.9
MBI08_g20551_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D242885 7.3e-06 54.7 28 85.7


User provided reference genes

Program Settings