Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 3.1e-262 907.9 453 100.0
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 2.3e-124 449.9 454 55.3
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.5e-99 367.5 383 51.4
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.5e-99 367.5 419 48.4
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.3e-98 364.4 445 46.1
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.1e-97 361.3 431 48.3
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.2e-93 347.8 421 47.0
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.6e-93 347.4 439 45.1
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 2.3e-92 343.6 396 47.7
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.6e-91 340.1 440 43.2
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.3e-90 337.8 319 52.4
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 2.2e-90 337.0 453 42.2
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.2e-88 331.3 365 49.0
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 1.0e-87 328.2 445 42.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.0e-87 328.2 445 42.0
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.0e-87 328.2 331 49.2
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 3.3e-86 323.2 363 47.1
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 5.6e-86 322.4 447 41.8
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 9.5e-86 321.6 443 41.3
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.2e-85 321.2 329 53.2
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.6e-85 320.9 416 46.2
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.8e-85 320.1 377 44.8
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 3.6e-85 319.7 331 49.8
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 3.6e-85 319.7 317 53.0
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.1e-84 316.6 438 41.6
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 4.0e-84 316.2 383 45.7
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.2e-83 314.7 333 48.6
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.0e-83 313.9 452 42.9
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 5.8e-83 312.4 437 40.3
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-82 311.2 324 51.9
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.9e-82 309.3 322 48.4
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 8.3e-82 308.5 322 48.8
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 8.3e-82 308.5 322 48.1
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-81 307.8 320 51.6
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-81 307.4 319 52.0
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.0e-81 305.4 309 51.1
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 9.2e-81 305.1 449 41.2
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.6e-80 304.3 313 50.8
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.6e-80 304.3 333 46.5
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.6e-80 304.3 348 46.8
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.1e-80 303.9 329 50.2
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.1e-80 303.9 443 40.6
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 3.5e-80 303.1 356 45.5
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.6e-80 302.8 317 52.7
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.6e-80 302.8 278 54.7
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 7.8e-80 302.0 329 50.2
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.3e-79 300.4 331 49.5
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 3.9e-79 299.7 459 41.0
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.5e-78 297.0 381 43.8
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 2.5e-78 297.0 440 38.9
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 7.3e-78 295.4 318 48.1
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 9.5e-78 295.0 336 48.8
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.6e-77 294.3 314 49.4
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.1e-76 290.0 356 44.1
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 8.9e-76 288.5 427 41.2
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.5e-75 287.7 367 43.6
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 2.0e-75 287.3 326 48.8
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.4e-75 286.2 404 41.3
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.7e-74 283.1 314 48.7
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 8.3e-74 282.0 313 50.2
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-73 281.6 303 48.8
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.4e-73 281.2 318 48.1
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.4e-73 281.2 387 40.6
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.9e-73 280.8 313 48.6
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.4e-73 279.3 306 47.7
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 7.1e-73 278.9 317 47.6
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.3e-71 274.6 311 47.3
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 5.1e-71 272.7 314 47.8
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.5e-70 270.4 298 49.7
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.0e-68 263.1 275 49.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.2e-67 261.5 290 49.3
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-67 260.4 275 48.7
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-66 256.9 320 43.1
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 4.9e-66 256.1 449 35.9
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-65 255.0 322 43.2
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.9e-65 254.2 316 44.3
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.4e-65 253.8 303 42.9
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 3.2e-65 253.4 307 47.9
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 5.4e-65 252.7 314 43.3
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.1e-64 250.8 262 51.1
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.8e-64 248.8 316 43.7
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 7.8e-64 248.8 336 41.4
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 7.8e-64 248.8 354 39.8
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.3e-63 247.3 317 45.1
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 3.9e-63 246.5 312 42.6
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 3.9e-63 246.5 327 43.4
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 8.7e-63 245.4 580 31.7
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 2.5e-62 243.8 315 46.0
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 3.3e-62 243.4 274 46.4
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 5.6e-62 242.7 312 42.9
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 5.6e-62 242.7 288 45.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.1e-61 240.7 312 40.4
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.1e-60 238.4 317 46.1
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.4e-60 238.0 312 42.3
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 6.9e-60 235.7 315 44.1
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 9.0e-60 235.3 312 41.0
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 9.0e-60 235.3 312 41.3
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 4.4e-59 233.0 305 43.3
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 4.4e-59 233.0 314 41.4
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 4.9e-58 229.6 323 39.9
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 6.4e-58 229.2 305 43.3
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 6.4e-58 229.2 310 42.3
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 6.4e-58 229.2 327 40.7
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 8.4e-58 228.8 334 43.1
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.4e-57 228.0 334 43.1
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 3.2e-57 226.9 305 43.0
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.2e-57 226.9 313 42.5
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 5.4e-57 226.1 318 43.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 7.1e-57 225.7 319 41.7
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.3e-55 220.7 310 41.9
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.9e-52 209.1 303 40.3
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 6.9e-52 209.1 210 50.5
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.0e-52 208.8 227 49.3
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.4e-50 202.2 274 43.8
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.2e-49 199.9 274 43.8
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 9.3e-49 198.7 282 43.6
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.3e-47 194.9 309 40.5
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 2.5e-46 190.7 263 39.9
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 1.5e-43 181.4 276 39.1
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.6e-43 180.6 313 33.9
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 6.4e-42 176.0 183 50.3
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 9.3e-41 172.2 232 42.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.0e-39 168.7 188 47.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.0e-39 168.7 188 47.9
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 5.7e-30 136.3 231 39.0
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 8.2e-29 132.5 150 42.0
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 6.9e-28 129.4 233 36.5
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 3.8e-26 123.6 183 36.6
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.0e-23 115.5 174 40.8
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 3.3e-22 110.5 121 48.8
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.3e-22 110.2 102 50.0
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.2e-19 102.1 148 39.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 7.4e-14 82.8 76 51.3
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.7e-13 81.6 146 37.7
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.4e-07 62.0 67 49.3
SEGI_13457 Sequoiadendron giganteum HOM05D035915 ORTHO05D004606 8.8e-07 59.3 82 40.2


User provided reference genes

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