Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI08_g09580_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 2.9e-42 174.9 92 100.0
MBI05_g39718_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 3.7e-29 131.3 68 92.6
QL06p052479 Quercus lobata HOM05D004334 ORTHO05D004763 2.2e-21 105.5 76 60.5
TAR376G1081 Trochodendron aralioides HOM05D004334 ORTHO05D004763 1.2e-19 99.8 67 67.2
Cpa.g.sc6.335 Carica papaya HOM05D004334 ORTHO05D004763 2.0e-19 99.0 67 61.2
Nn6g31831 Nelumbo nucifera HOM05D004334 ORTHO05D004763 2.7e-19 98.6 68 63.2
MBI08_g35872_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 4.5e-19 97.8 66 68.2
CiPaw.08G179800 Carya illinoinensis HOM05D004334 ORTHO05D004763 6.5e-18 94.0 67 55.2
Nn5g30900 Nelumbo nucifera HOM05D004334 ORTHO05D004763 8.5e-18 93.6 77 58.4
Dinv40159 Davidia involucrata HOM05D004334 ORTHO05D004763 1.1e-17 93.2 73 57.5
TWI73G1167 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 1.1e-17 93.2 68 60.3
CiPaw.07G005200 Carya illinoinensis HOM05D004334 ORTHO05D004763 3.2e-17 91.7 75 56.0
Glyma.11G082600 Glycine max HOM05D004334 ORTHO05D004763 3.2e-17 91.7 73 56.2
Thecc.01G009500 Theobroma cacao HOM05D004334 ORTHO05D004763 5.5e-17 90.9 76 55.3
FAN23G2490 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.2e-16 89.7 65 63.1
Dinv08539 Davidia involucrata HOM05D004334 ORTHO05D004763 1.6e-16 89.4 76 53.9
Gohir.D11G178000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 1.6e-16 89.4 76 55.3
Gorai.007G189900 Gossypium raimondii HOM05D004334 ORTHO05D004763 1.6e-16 89.4 76 55.3
VMungo1215G1979 Vigna mungo HOM05D004334 ORTHO05D004763 2.1e-16 89.0 71 57.7
Aqoxy6G01836 Aquilegia oxysepala HOM05D004334 ORTHO05D004763 2.8e-16 88.6 76 52.6
FAN26G1367 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.8e-16 88.6 65 61.5
TWI53G1416 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 3.6e-16 88.2 68 55.9
Prupe.7G177700 Prunus persica HOM05D004334 ORTHO05D004763 4.7e-16 87.8 65 61.5
Lj2g0016931 Lotus japonicus HOM05D004334 ORTHO05D004763 6.1e-16 87.4 68 57.4
Phvul.002G112900 Phaseolus vulgaris HOM05D004334 ORTHO05D004763 8.0e-16 87.0 73 53.4
PGR102G0214 Punica granatum HOM05D004334 ORTHO05D004763 8.0e-16 87.0 68 60.3
Gohir.A11G171000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 1.4e-15 86.3 76 53.9
ATR0661G230 Amborella trichopoda HOM05D004334 ORTHO05D004763 2.3e-15 85.5 75 46.7
FvH4_1g10780 Fragaria vesca HOM05D004334 ORTHO05D004763 2.3e-15 85.5 65 60.0
Oeu012549.1 Olea europaea HOM05D004334 ORTHO05D004763 2.3e-15 85.5 75 56.0
CSS0027377 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 3.0e-15 85.1 71 54.9
Gohir.A02G175700 Gossypium hirsutum HOM05D004334 ORTHO05D004763 3.0e-15 85.1 68 63.2
arahy.Tifrunner.gnm1.ann1.65IKEQ Arachis hypogaea HOM05D004334 ORTHO05D004763 4.0e-15 84.7 76 46.1
Cc07_g11490 Coffea canephora HOM05D004334 ORTHO05D004763 5.2e-15 84.3 63 58.7
arahy.Tifrunner.gnm1.ann1.106C79 Arachis hypogaea HOM05D004334 ORTHO05D004763 6.8e-15 84.0 76 44.7
arahy.Tifrunner.gnm1.ann1.R6TSSQ Arachis hypogaea HOM05D004334 ORTHO05D004763 6.8e-15 84.0 76 44.7
RcHm_v2.0_Chr2g0097961 Rosa chinensis HOM05D004334 ORTHO05D004763 6.8e-15 84.0 72 55.6
Eucgr.I02283 Eucalyptus grandis HOM05D004334 ORTHO05D004763 8.8e-15 83.6 67 56.7
AT3G51390 Arabidopsis thaliana HOM05D004334 ORTHO05D004763 1.5e-14 82.8 77 50.6
CSS0049695 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 2.6e-14 82.0 69 55.1
Actinidia17393 Actinidia chinensis HOM05D004334 ORTHO05D004763 3.4e-14 81.6 61 62.3
Gohir.D03G004200 Gossypium hirsutum HOM05D004334 ORTHO05D004763 3.4e-14 81.6 68 60.3
Gorai.003G004400 Gossypium raimondii HOM05D004334 ORTHO05D004763 3.4e-14 81.6 68 60.3
SGA_v2.0_scaffold108G30985 Striga asiatica HOM05D004334 ORTHO05D004763 3.4e-14 81.6 64 54.7
Rhsim08G0028900 Rhododendron simsii HOM05D004334 ORTHO05D004763 4.4e-14 81.3 66 57.6
MSTRG.2739 Avicennia marina HOM05D004334 ORTHO05D004763 7.5e-14 80.5 70 54.3
AL5G31840 Arabidopsis lyrata HOM05D004334 ORTHO05D004763 9.8e-14 80.1 77 50.6
Carub.0005s1777 Capsella rubella HOM05D004334 ORTHO05D004763 9.8e-14 80.1 77 50.6
MD15G1235400 Malus domestica HOM05D004334 ORTHO05D004763 1.3e-13 79.7 59 62.7
arahy.Tifrunner.gnm1.ann1.5JBS04 Arachis hypogaea HOM05D004334 ORTHO05D004763 1.7e-13 79.3 76 43.4
Ciclev10025980m.g Citrus clementina HOM05D004334 ORTHO05D004763 1.7e-13 79.3 64 56.2
Migut.H02192 Erythranthe guttata HOM05D004334 ORTHO05D004763 2.2e-13 79.0 69 50.7
Nitab4.5_0004994g0030 Nicotiana tabacum HOM05D004334 ORTHO05D004763 2.2e-13 79.0 70 51.4
Haze_03684 Corylus avellana HOM05D004334 ORTHO05D004763 2.8e-13 78.6 65 55.4
Cfa007045 Carpinus fangiana HOM05D004334 ORTHO05D004763 4.9e-13 77.8 65 53.8
Lsat_1_v5_gn_4_143501 Lactuca sativa HOM05D004334 ORTHO05D004763 4.9e-13 77.8 68 54.4
Oeu039717.1 Olea europaea HOM05D004334 ORTHO05D004763 4.9e-13 77.8 75 52.0
Thhalv10010516m.g Eutrema salsugineum HOM05D004334 ORTHO05D004763 8.3e-13 77.0 77 48.1
MD02G1121800 Malus domestica HOM05D004334 ORTHO05D004763 1.1e-12 76.6 61 57.4
Manes.03G080400 Manihot esculenta HOM05D004334 ORTHO05D004763 1.1e-12 76.6 69 49.3
CARHR160990 Cardamine hirsuta HOM05D004334 ORTHO05D004763 1.4e-12 76.3 73 54.8
Lalb_Chr05g0212061 Lupinus albus HOM05D004334 ORTHO05D004763 1.8e-12 75.9 70 47.1
FAN05G4181 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.4e-12 75.5 66 57.6
Hund03662 Selenicereus undatus HOM05D004334 ORTHO05D004763 3.1e-12 75.1 71 53.5
Atru.chr3.934 Acer truncatum HOM05D004334 ORTHO05D004763 4.1e-12 74.7 63 55.6
CAN.G890.9 Capsicum annuum HOM05D004334 ORTHO05D004763 4.1e-12 74.7 70 47.1
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 4.1e-12 74.7 72 47.2
Eucgr.J02517 Eucalyptus grandis HOM05D004334 ORTHO05D004763 4.1e-12 74.7 55 63.6
PSO541G2607 Papaver somniferum HOM05D004334 ORTHO05D004763 4.1e-12 74.7 72 48.6
PSO675G0891 Papaver somniferum HOM05D004334 ORTHO05D004763 5.4e-12 74.3 72 48.6
Sopen02g027910 Solanum pennellii HOM05D004334 ORTHO05D004763 5.4e-12 74.3 70 47.1
vmacro18446 Vaccinium macrocarpon HOM05D004334 ORTHO05D004763 7.0e-12 73.9 66 53.0
MELO3C007955.2 Cucumis melo HOM05D004334 ORTHO05D004763 1.2e-11 73.2 73 49.3
FAN09G1010 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.2e-11 73.2 66 56.1
FAN09G3278 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.2e-11 73.2 66 56.1
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla HOM05D004334 ORTHO05D004763 1.2e-11 73.2 69 49.3
Sp5g10830 Schrenkiella parvula HOM05D004334 ORTHO05D004763 1.2e-11 73.2 77 42.9
Solyc02g083150.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 1.2e-11 73.2 70 47.1
Psat2g151080 Pisum sativum HOM05D004334 ORTHO05D004763 1.6e-11 72.8 73 47.9
TPR.G25124 Trifolium pratense HOM05D004334 ORTHO05D004763 1.6e-11 72.8 76 43.4
A09p44490 Brassica napus HOM05D004334 ORTHO05D004763 2.0e-11 72.4 77 42.9
C08p26670 Brassica napus HOM05D004334 ORTHO05D004763 2.0e-11 72.4 77 42.9
BraA09t39907Z Brassica rapa HOM05D004334 ORTHO05D004763 2.0e-11 72.4 77 42.9
Ca_24954_v3 Cicer arietinum L. HOM05D004334 ORTHO05D004763 2.0e-11 72.4 74 44.6
CsaV3_6G047640 Cucumis sativus L. HOM05D004334 ORTHO05D004763 2.0e-11 72.4 73 49.3
ClCG01G020710 Citrullus lanatus HOM05D004334 ORTHO05D004763 2.7e-11 72.0 76 47.4
Sed0027006 Sechium edule HOM05D004334 ORTHO05D004763 2.7e-11 72.0 69 49.3
FAN02G4027 Fragaria x ananassa HOM05D004334 ORTHO05D004763 3.5e-11 71.6 66 54.5
Nitab4.5_0005413g0010 Nicotiana tabacum HOM05D004334 ORTHO05D004763 3.5e-11 71.6 70 45.7
FvH4_6g14950 Fragaria vesca HOM05D004334 ORTHO05D004763 4.5e-11 71.2 66 56.1
FAN14G2747 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.8e-11 70.5 66 56.1
Sabra07G0050800 Salix brachista HOM05D004334 ORTHO05D004763 1.0e-10 70.1 51 58.8
Sc03g0003810 Simmondsia chinensis HOM05D004334 ORTHO05D004763 1.0e-10 70.1 65 50.8
PGSC0003DMG400001577 Solanum tuberosum HOM05D004334 ORTHO05D004763 1.0e-10 70.1 70 45.7
BolC8t50281H Brassica oleracea HOM05D004334 ORTHO05D004763 1.3e-10 69.7 77 41.6
Potri.005G104700 Populus trichocarpa HOM05D004334 ORTHO05D004763 1.7e-10 69.3 49 59.2
Potri.005G104800 Populus trichocarpa HOM05D004334 ORTHO05D004763 1.7e-10 69.3 49 59.2
THA.LOC104821351 Tarenaya hassleriana HOM05D004334 ORTHO05D004763 2.3e-10 68.9 76 48.7
BcaB01g00520 Brassica carinata HOM05D004334 ORTHO05D004763 2.9e-10 68.6 77 41.6
Medtr5g023230 Medicago truncatula HOM05D004334 ORTHO05D004763 2.9e-10 68.6 73 46.6
AUR62026202 Chenopodium quinoa HOM05D004334 ORTHO05D004763 5.0e-10 67.8 67 50.7
Sabra05G0086000 Salix brachista HOM05D004334 ORTHO05D004763 5.0e-10 67.8 49 57.1
Potri.007G060100 Populus trichocarpa HOM05D004334 ORTHO05D004763 1.1e-09 66.6 59 50.8
BraA01t02255Z Brassica rapa HOM05D004334 ORTHO05D004763 1.9e-09 65.9 77 46.8
PGR119G0893 Punica granatum HOM05D004334 ORTHO05D004763 1.9e-09 65.9 49 57.1
AUR62026391 Chenopodium quinoa HOM05D004334 ORTHO05D004763 5.6e-09 64.3 67 49.3
Peaxi162Scf00300g00517 Petunia axillaris HOM05D004334 ORTHO05D004763 1.2e-08 63.2 77 42.9
Ah.02g129060 Amaranthus hybridus HOM05D004334 ORTHO05D004763 2.1e-08 62.4 61 50.8
EL10Ac6g13347 Beta vulgaris HOM05D004334 ORTHO05D004763 4.7e-08 61.2 69 49.3
FAN19G0005 Fragaria x ananassa HOM05D004334 ORTHO05D004763 4.7e-08 61.2 44 65.9
BcaNung00388 Brassica carinata HOM05D004334 ORTHO05D004763 1.0e-07 60.1 62 46.8
SGA_v2.0_scaffold2G00960 Striga asiatica HOM05D004334 ORTHO05D004763 1.4e-07 59.7 49 53.1
unitig_27.g25346 Utricularia gibba HOM05D004334 ORTHO05D004763 4.0e-07 58.2 52 51.9
SalBow3G0047 Salvia bowleyana HOM05D004334 ORTHO05D004763 8.9e-07 57.0 49 55.1
HPP92_022390 Vanilla planifolia HOM05D004334 ORTHO05D004763 8.9e-07 57.0 54 51.9
RcHm_v2.0_Chr3g0494861 Rosa chinensis HOM05D004334 ORTHO05D004763 1.2e-06 56.6 41 63.4
CDE02G4661 Ceratophyllum demersum HOM05D004334 ORTHO05D004763 1.5e-06 56.2 61 39.3
CAN.G23.17 Capsicum annuum HOM05D004334 ORTHO05D004763 3.4e-06 55.1 54 48.1
HanXRQChr09g0256961 Helianthus annuus HOM05D004334 ORTHO05D004763 4.4e-06 54.7 68 44.1
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 7.5e-06 53.9 47 53.2


User provided reference genes

Program Settings