Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI08_g05068_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 4.2e-78 294.7 152 100.0
MBI14_g09475_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D004104 5.9e-64 247.7 134 94.0
MBI03_g44580_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 6.1e-61 237.7 138 89.9
MBI17_g30844_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 1.4e-54 216.5 119 94.1
MBI19_g38425_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 2.6e-35 152.5 84 91.7
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 2.1e-21 106.3 84 67.9
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 8.0e-21 104.4 89 64.0
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 2.3e-20 102.8 85 65.9
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 2.3e-20 102.8 84 66.7
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 4.0e-20 102.1 95 58.9
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.2e-19 100.5 85 64.7
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 1.2e-19 100.5 79 63.3
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 1.5e-19 100.1 82 67.1
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.0e-19 99.8 106 55.7
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 2.6e-19 99.4 85 63.5
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 3.4e-19 99.0 84 64.3
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 4.4e-19 98.6 84 65.5
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 5.7e-19 98.2 116 52.6
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 9.8e-19 97.4 82 65.9
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 9.8e-19 97.4 84 66.7
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 9.8e-19 97.4 84 65.5
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 1.3e-18 97.1 84 60.7
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 1.3e-18 97.1 90 56.7
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 1.7e-18 96.7 84 64.3
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 2.2e-18 96.3 81 63.0
Haze_19031 Corylus avellana HOM05D003568 ORTHO05D004104 2.8e-18 95.9 86 61.6
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 2.8e-18 95.9 65 75.4
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 3.7e-18 95.5 78 67.9
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 4.9e-18 95.1 82 63.4
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 6.3e-18 94.7 84 64.3
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 6.3e-18 94.7 62 79.0
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 1.4e-17 93.6 64 71.9
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 1.8e-17 93.2 65 70.8
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 1.8e-17 93.2 64 71.9
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 1.8e-17 93.2 112 53.6
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 1.8e-17 93.2 84 64.3
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 2.4e-17 92.8 80 65.0
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 2.4e-17 92.8 80 65.0
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 2.4e-17 92.8 81 59.3
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 2.4e-17 92.8 87 58.6
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 2.4e-17 92.8 64 70.3
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 4.1e-17 92.0 86 58.1
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 4.1e-17 92.0 84 60.7
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 4.1e-17 92.0 84 59.5
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 5.4e-17 91.7 66 69.7
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 5.4e-17 91.7 64 71.9
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 5.4e-17 91.7 64 71.9
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 5.4e-17 91.7 62 77.4
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 5.4e-17 91.7 66 71.2
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 5.4e-17 91.7 64 68.8
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 7.0e-17 91.3 81 59.3
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 7.0e-17 91.3 77 63.6
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.2e-16 90.5 64 70.3
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 1.2e-16 90.5 64 70.3
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 2.0e-16 89.7 78 60.3
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 2.0e-16 89.7 78 60.3
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 2.0e-16 89.7 81 58.0
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 2.0e-16 89.7 73 63.0
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 3.5e-16 89.0 72 65.3
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 3.5e-16 89.0 85 56.5
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 4.5e-16 88.6 64 70.3
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 4.5e-16 88.6 64 70.3
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 4.5e-16 88.6 64 70.3
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 5.9e-16 88.2 63 71.4
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 5.9e-16 88.2 63 71.4
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 5.9e-16 88.2 63 68.3
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 7.8e-16 87.8 80 57.5
HanXRQChr14g0445661 Helianthus annuus HOM05D003568 ORTHO05D004104 1.0e-15 87.4 132 43.2
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 1.3e-15 87.0 64 70.3
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 1.3e-15 87.0 63 71.4
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 1.3e-15 87.0 64 70.3
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 2.3e-15 86.3 66 66.7
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 2.9e-15 85.9 89 53.9
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 3.8e-15 85.5 75 60.0
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 3.8e-15 85.5 64 71.9
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 3.8e-15 85.5 77 59.7
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 3.8e-15 85.5 81 56.8
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 5.0e-15 85.1 61 72.1
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 5.0e-15 85.1 61 72.1
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 5.0e-15 85.1 61 72.1
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 6.6e-15 84.7 70 65.7
SEGI_20614 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 6.6e-15 84.7 78 60.3
SEGI_24596 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 6.6e-15 84.7 78 60.3
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 6.6e-15 84.7 78 60.3
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 8.6e-15 84.3 70 64.3
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 8.6e-15 84.3 64 65.6
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.1e-14 84.0 84 57.1
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 1.5e-14 83.6 62 67.7
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 4.3e-14 82.0 84 56.0
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 4.3e-14 82.0 84 57.1
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 5.6e-14 81.6 84 53.6
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 9.5e-14 80.9 69 60.9
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.2e-13 80.5 84 51.2
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 1.6e-13 80.1 54 70.4
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.6e-13 80.1 84 53.6
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 1.6e-13 80.1 79 55.7
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 2.1e-13 79.7 84 48.8
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 3.6e-13 79.0 58 70.7
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 4.7e-13 78.6 59 62.7
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 6.1e-13 78.2 84 51.2
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 8.0e-13 77.8 64 60.9
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 8.0e-13 77.8 62 62.9
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 8.0e-13 77.8 84 51.2
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 1.0e-12 77.4 53 69.8
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 1.4e-12 77.0 90 47.8
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.4e-12 77.0 79 49.4
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 1.4e-12 77.0 66 60.6
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 1.4e-12 77.0 84 48.8
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 1.8e-12 76.6 57 68.4
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 1.8e-12 76.6 58 67.2
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 3.0e-12 75.9 93 45.2
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 4.0e-12 75.5 57 66.7
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 4.0e-12 75.5 62 61.3
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 5.2e-12 75.1 65 60.0
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 5.2e-12 75.1 65 60.0
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 5.2e-12 75.1 60 63.3
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 6.8e-12 74.7 59 66.1
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 6.8e-12 74.7 65 60.0
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 8.9e-12 74.3 61 63.9
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 8.9e-12 74.3 84 50.0
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 1.2e-11 73.9 62 59.7
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 2.0e-11 73.2 98 50.0
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 5.7e-11 71.6 63 58.7
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 7.5e-11 71.2 64 56.2
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 7.5e-11 71.2 64 56.2
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 9.8e-11 70.9 62 56.5
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 3.7e-10 68.9 44 75.0
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 3.7e-10 68.9 67 55.2
Solyc10g019120.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.1e-09 67.4 53 62.3
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 1.4e-09 67.0 58 58.6
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 1.4e-09 67.0 58 58.6
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 5.4e-09 65.1 63 57.1
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 5.4e-09 65.1 58 58.6
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 7.0e-09 64.7 58 56.9
MBI16_g18645_MAGBIO Magnolia biondii HOM05D051642 ORTHO05D242200 9.2e-09 64.3 37 78.4
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 1.6e-08 63.5 40 75.0
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 4.6e-08 62.0 59 57.6
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 4.6e-08 62.0 58 55.2
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 1.0e-07 60.8 58 55.2
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 3.9e-07 58.9 49 63.3
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 8.6e-07 57.8 37 67.6
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 8.6e-07 57.8 41 61.0
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 2.5e-06 56.2 58 44.8


User provided reference genes

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