Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.2e-269 932.6 478 100.0
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.7e-232 808.5 478 89.7
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.6e-192 676.4 482 74.9
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.6e-187 659.8 482 73.0
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.5e-187 658.7 461 76.1
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.0e-186 657.1 477 73.6
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 5.0e-186 654.8 482 73.9
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.5e-185 653.3 485 73.4
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 3.2e-185 652.1 482 73.0
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 7.2e-185 651.0 485 72.2
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.2e-184 650.2 482 72.8
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.6e-184 649.8 482 72.8
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.7e-184 649.0 484 73.1
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.6e-184 648.7 483 72.5
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.0e-183 645.6 489 72.2
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.2e-182 643.7 484 72.9
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.2e-182 643.7 485 71.5
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.5e-182 643.3 487 71.9
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.6e-182 642.5 484 72.9
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.6e-182 642.5 483 71.4
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.6e-182 642.5 485 72.2
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 5.7e-182 641.3 483 71.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.3e-181 640.2 481 72.3
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.3e-181 640.2 481 72.3
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 2.8e-181 639.0 487 71.7
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 4.8e-181 638.3 477 71.7
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 6.3e-181 637.9 485 71.1
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.3e-181 637.9 483 70.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 8.3e-181 637.5 484 70.9
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.4e-180 636.7 480 71.5
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.8e-180 636.3 482 69.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.8e-180 636.3 484 70.2
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.4e-180 636.0 482 71.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.4e-180 636.0 481 71.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.2e-179 633.6 486 70.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.2e-179 633.6 480 71.0
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.6e-179 633.3 485 70.9
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.6e-179 633.3 482 71.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.6e-179 633.3 484 70.9
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.6e-179 633.3 484 71.5
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.7e-179 632.5 482 70.5
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.7e-179 632.5 482 70.5
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 4.5e-179 631.7 482 71.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 5.9e-179 631.3 484 69.8
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 5.9e-179 631.3 481 70.7
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 7.7e-179 630.9 479 70.1
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 7.7e-179 630.9 481 70.7
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.0e-178 630.6 481 70.7
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.0e-178 630.6 484 71.7
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-178 629.8 481 70.5
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.7e-178 629.8 485 70.3
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.7e-178 629.8 479 70.8
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.7e-178 629.8 479 70.6
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.7e-178 629.8 481 70.5
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 2.2e-178 629.4 480 70.6
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.2e-178 629.4 486 69.8
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.2e-178 629.4 478 70.5
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 2.9e-178 629.0 489 70.1
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.0e-178 628.2 482 69.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.5e-178 627.9 486 69.3
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 6.5e-178 627.9 476 72.1
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 8.5e-178 627.5 485 69.9
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.9e-177 626.3 486 69.5
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.9e-177 626.3 482 71.2
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.9e-177 626.3 483 68.9
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.5e-177 625.9 479 70.6
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.5e-177 625.9 482 68.9
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 3.2e-177 625.5 478 69.7
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 4.2e-177 625.2 485 70.3
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 5.5e-177 624.8 481 70.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 5.5e-177 624.8 485 69.5
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 7.2e-177 624.4 435 75.4
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 9.4e-177 624.0 480 69.4
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 9.4e-177 624.0 480 69.4
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 9.4e-177 624.0 485 70.1
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.7e-176 622.5 480 71.0
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 3.6e-176 622.1 482 70.1
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 3.6e-176 622.1 484 69.6
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 4.7e-176 621.7 483 68.3
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 4.7e-176 621.7 487 69.8
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 4.7e-176 621.7 480 69.2
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 6.1e-176 621.3 486 68.9
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.1e-176 621.3 442 73.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 8.0e-176 620.9 442 73.1
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 8.0e-176 620.9 480 71.0
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.4e-175 620.2 484 68.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.8e-175 619.8 481 69.4
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.8e-175 619.8 481 69.4
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.8e-175 619.8 466 70.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.3e-175 619.4 477 69.4
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.3e-175 619.4 438 73.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 4.0e-175 618.6 449 73.1
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 8.8e-175 617.5 430 76.3
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 8.8e-175 617.5 483 69.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 8.8e-175 617.5 480 70.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.6e-174 615.9 445 72.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 7.5e-174 614.4 426 75.6
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.7e-173 613.2 477 69.4
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.9e-173 611.7 476 68.5
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 4.9e-173 611.7 477 69.2
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-172 610.5 478 69.0
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-172 610.5 478 69.0
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.4e-172 610.1 466 71.7
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.8e-172 609.8 479 68.1
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.8e-172 609.8 436 73.9
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 3.1e-172 609.0 436 73.2
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 3.1e-172 609.0 436 73.2
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.1e-172 609.0 455 71.0
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.1e-172 608.6 427 74.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.0e-172 607.8 463 70.6
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.5e-169 600.1 425 74.1
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.5e-169 599.4 441 71.4
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 5.6e-169 598.2 490 66.9
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.6e-168 595.5 422 75.6
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 2.0e-166 589.7 509 62.7
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 9.8e-166 587.4 426 72.5
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 6.4e-165 584.7 419 72.8
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 4.3e-161 572.0 482 66.8
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 2.6e-158 562.8 478 65.5
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.9e-156 556.6 422 71.6
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.1e-151 540.8 486 63.4
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.4e-148 529.6 380 73.9
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.2e-147 527.3 432 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 8.6e-146 521.2 451 61.9
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 8.9e-143 511.1 373 72.7
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.7e-141 506.9 344 78.8
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 9.6e-137 491.1 403 65.3
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 2.8e-136 489.6 414 61.1
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.4e-135 487.3 415 59.3
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 3.1e-135 486.1 407 60.4
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.0e-135 485.7 416 61.5
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 9.9e-134 481.1 416 61.1
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-133 480.7 416 61.1
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 4.9e-133 478.8 417 60.0
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 8.7e-130 468.0 411 59.1
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.3e-129 465.7 408 58.1
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 7.3e-129 464.9 406 58.4
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.6e-128 463.8 406 57.4
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.1e-127 461.1 419 59.2
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.0e-126 456.8 422 56.2
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 9.3e-124 448.0 432 54.9
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.4e-116 423.3 402 54.0
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.8e-114 417.2 359 64.1
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 5.3e-103 379.0 407 52.3
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.1e-87 328.2 324 55.6
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 2.4e-87 327.0 401 48.4
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 8.5e-77 292.0 240 64.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.5e-70 270.0 204 71.6
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.2e-61 240.7 381 38.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 6.8e-58 229.2 144 83.3
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 2.0e-57 227.6 154 72.1
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.3e-53 214.9 215 54.0
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 5.7e-49 199.5 139 70.5
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.6e-41 174.1 217 45.2
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 5.0e-37 159.8 172 57.0
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.5e-33 148.3 81 90.1
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 6.6e-29 132.9 135 53.3
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-28 131.7 84 84.5
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.3e-24 118.6 85 61.2
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 9.2e-23 112.5 106 54.7
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.2e-22 112.1 172 39.5
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 5.8e-17 93.2 53 77.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.4e-15 87.8 86 52.3
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 3.2e-07 60.8 36 80.6


User provided reference genes

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