Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.1e-307 1058.1 513 100.0
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 7.4e-204 714.1 733 56.8
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.1e-178 630.6 582 63.9
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 2.5e-74 283.9 517 37.7
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.6e-65 253.4 524 33.8
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.0e-64 251.9 495 36.4
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 4.0e-64 250.0 454 38.3
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 3.7e-62 243.4 454 37.9
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 6.4e-62 242.7 498 34.3
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.1e-61 241.9 454 35.2
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.4e-61 240.7 459 35.7
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 2.4e-61 240.7 474 35.0
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 2.4e-61 240.7 498 34.3
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 2.4e-61 240.7 456 35.7
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.0e-61 239.2 454 36.3
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 7.0e-61 239.2 495 35.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 7.0e-61 239.2 451 35.0
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.2e-60 238.4 454 37.7
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.2e-60 238.4 502 34.5
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 2.7e-60 237.3 458 36.5
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.5e-60 236.9 501 34.5
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.6e-60 236.5 452 36.7
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 5.9e-60 236.1 517 33.8
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 2.3e-59 234.2 456 35.1
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 6.6e-59 232.6 446 35.9
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.5e-58 231.5 462 36.1
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.9e-58 231.1 451 35.0
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.5e-58 230.7 462 35.9
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 3.3e-58 230.3 473 35.5
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.3e-58 230.3 473 35.5
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.6e-57 228.0 467 34.9
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 4.7e-57 226.5 498 32.1
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 3.1e-56 223.8 454 34.1
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 2.0e-55 221.1 467 34.7
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.7e-54 218.0 453 33.6
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.7e-54 218.0 375 38.4
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.7e-52 210.7 518 32.8
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.6e-51 206.1 493 33.3
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.1e-49 201.1 464 32.1
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 3.6e-49 200.3 462 32.0
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 4.7e-49 199.9 462 34.0
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 8.1e-49 199.1 446 32.1
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 1.8e-48 198.0 470 31.9
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 5.2e-48 196.4 464 32.1
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.2e-47 195.3 457 33.5
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 4.4e-47 193.4 475 33.9
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 5.8e-47 193.0 472 30.5
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 5.8e-47 193.0 517 30.9
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 5.8e-47 193.0 472 32.8
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 7.5e-47 192.6 449 32.7
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 3.7e-46 190.3 468 32.1
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 6.4e-46 189.5 448 32.6
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.9e-45 188.0 452 31.6
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 3.2e-45 187.2 472 30.3
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 4.1e-45 186.8 460 31.7
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 9.2e-45 185.7 454 30.0
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.2e-44 185.3 454 30.0
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.6e-44 184.9 461 34.7
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 2.7e-44 184.1 450 30.0
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 3.5e-44 183.7 454 30.2
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.3e-43 181.8 474 30.6
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.3e-43 181.0 451 29.9
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 2.3e-43 181.0 470 30.2
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 3.9e-43 180.3 482 31.7
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 3.9e-43 180.3 450 30.0
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 3.9e-43 180.3 449 31.2
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 3.9e-43 180.3 465 31.0
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 5.1e-43 179.9 481 31.8
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 1.1e-42 178.7 457 31.3
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 3.3e-42 177.2 376 34.3
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.2e-41 175.3 470 30.2
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 2.1e-41 174.5 395 32.2
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 3.6e-41 173.7 383 33.4
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 3.6e-41 173.7 475 28.4
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.6e-41 173.7 509 31.0
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 4.7e-41 173.3 459 31.8
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.4e-40 171.8 429 32.2
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.8e-40 171.4 473 31.7
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 2.3e-40 171.0 448 32.1
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 4.0e-40 170.2 474 33.1
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.5e-39 168.3 364 35.2
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 2.0e-39 167.9 375 32.8
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.6e-39 167.5 384 32.3
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.2e-38 164.5 264 38.6
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 3.8e-38 163.7 485 29.3
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.9e-37 161.4 449 31.0
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 7.1e-37 159.5 459 29.6
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 9.2e-37 159.1 470 29.8
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.1e-36 157.9 356 33.1
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 7.8e-36 156.0 511 29.9
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.7e-35 154.8 473 30.9
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 6.6e-35 152.9 355 32.1
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.5e-34 151.8 390 30.5
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.3e-34 150.2 484 28.7
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 4.3e-34 150.2 365 32.6
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.2e-31 142.1 494 28.1
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.0e-31 141.4 484 27.9
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 6.4e-30 136.3 218 41.7
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 1.1e-29 135.6 454 25.3
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 4.6e-28 130.2 270 33.7
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.7e-27 128.3 343 33.2
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.0e-27 127.5 468 30.6
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.3e-26 123.6 396 28.5
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.6e-26 123.2 396 27.8
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 6.2e-25 119.8 264 33.0
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 8.1e-25 119.4 454 27.3
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.1e-24 119.0 454 26.9
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.4e-24 118.6 465 27.5
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.5e-23 115.2 326 29.8
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 5.8e-23 113.2 456 29.2
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 7.6e-23 112.8 281 29.5
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.3e-22 112.1 455 29.2
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.9e-22 110.9 436 26.6
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 3.8e-22 110.5 278 32.7
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.4e-22 109.8 326 30.4
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 5.4e-21 106.7 455 28.4
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 7.1e-21 106.3 517 24.2
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.9e-19 100.5 277 29.6
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 7.4e-18 96.3 223 32.7
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 1.6e-17 95.1 238 32.8
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-13 82.4 279 27.2
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.9e-12 76.3 195 31.8
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.7e-11 73.2 129 39.5
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 4.3e-10 70.5 54 53.7
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.7e-09 67.4 276 26.8
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 9.0e-08 62.8 173 27.7
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 2.0e-07 61.6 54 57.4
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.5e-07 60.5 164 30.5
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 4.9e-06 57.0 51 47.1
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 4.9e-06 57.0 51 47.1


User provided reference genes

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