Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.8e-85 318.5 215 100.0
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 7.8e-46 188.0 216 53.2
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 5.6e-28 128.6 216 39.8
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 7.3e-28 128.3 217 40.1
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 2.1e-27 126.7 219 39.3
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.6e-27 125.9 219 41.6
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 3.6e-27 125.9 225 40.0
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 6.2e-27 125.2 217 38.7
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 8.1e-27 124.8 221 41.6
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.8e-26 123.6 222 40.1
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.4e-26 123.2 221 39.4
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 3.1e-26 122.9 218 39.9
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 5.2e-26 122.1 217 40.1
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 5.2e-26 122.1 216 38.4
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 6.9e-26 121.7 226 38.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.2e-25 120.9 227 38.3
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.5e-25 120.6 217 38.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.4e-25 119.4 223 39.0
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 4.4e-25 119.0 211 40.3
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.8e-25 118.6 220 38.2
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 5.8e-25 118.6 218 40.4
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.3e-24 117.5 222 36.0
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.3e-24 117.5 215 39.5
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 4.9e-24 115.5 227 37.0
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.9e-23 113.6 225 37.3
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.9e-23 113.6 219 38.4
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.4e-23 113.2 217 38.2
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.4e-23 113.2 223 36.3
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.2e-23 112.8 218 38.1
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.4e-23 112.1 214 37.4
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 5.4e-23 112.1 219 36.5
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.1e-23 111.7 219 37.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 7.1e-23 111.7 215 39.1
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.6e-22 110.5 218 35.8
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.6e-22 110.5 233 37.3
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.1e-22 110.2 209 45.0
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.7e-22 109.8 213 37.6
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.7e-22 109.8 221 37.6
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.5e-22 109.4 215 37.7
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 3.5e-22 109.4 219 45.2
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 4.6e-22 109.0 229 35.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 7.8e-22 108.2 226 36.7
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.3e-21 107.5 216 35.6
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.3e-21 107.5 226 45.6
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.7e-21 107.1 225 35.6
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.7e-21 107.1 225 35.6
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.3e-21 106.7 227 35.2
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 5.1e-21 105.5 230 33.5
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.1e-21 105.5 231 35.5
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 6.6e-21 105.1 212 33.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 8.7e-21 104.8 229 36.7
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 8.7e-21 104.8 219 34.7
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 8.7e-21 104.8 227 34.8
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.1e-20 104.4 224 38.8
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.1e-20 104.4 232 35.8
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.5e-20 104.0 235 36.6
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.5e-20 104.0 231 35.1
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-20 102.8 220 34.5
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 3.3e-20 102.8 234 35.9
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 3.3e-20 102.8 215 35.8
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.3e-20 102.4 228 35.5
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.3e-20 101.7 233 33.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 9.6e-20 101.3 216 34.3
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.3e-19 100.9 224 41.5
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-19 100.1 221 34.4
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 2.1e-19 100.1 220 33.6
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.1e-19 100.1 220 33.2
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.1e-19 100.1 209 33.5
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 3.6e-19 99.4 213 33.8
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 3.6e-19 99.4 213 34.7
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.6e-19 99.4 219 36.1
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 4.8e-19 99.0 219 35.6
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 6.2e-19 98.6 204 36.8
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 6.2e-19 98.6 217 37.8
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.1e-18 97.8 217 33.6
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.8e-18 97.1 204 36.8
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.8e-18 97.1 213 35.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.4e-18 96.7 229 33.6
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.4e-18 96.7 221 33.5
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.4e-18 96.7 204 37.3
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.1e-18 96.3 216 33.8
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.1e-18 96.3 213 32.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 4.0e-18 95.9 217 33.2
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 6.9e-18 95.1 217 32.7
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 6.9e-18 95.1 221 33.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 6.9e-18 95.1 221 33.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 6.9e-18 95.1 221 33.9
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 9.0e-18 94.7 220 35.0
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.2e-17 94.4 223 31.4
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.5e-17 94.0 217 32.7
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.6e-17 93.2 221 33.0
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.6e-17 93.2 220 31.4
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.6e-17 93.2 90 55.6
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 3.4e-17 92.8 220 33.6
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.5e-17 92.4 228 34.2
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.8e-17 92.0 221 32.1
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.8e-17 92.0 226 35.8
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 5.8e-17 92.0 230 35.2
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 5.8e-17 92.0 222 33.8
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 5.8e-17 92.0 216 33.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 7.6e-17 91.7 219 35.6
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 9.9e-17 91.3 219 34.2
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 9.9e-17 91.3 206 37.9
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 9.9e-17 91.3 216 31.5
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.3e-16 90.9 223 32.7
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.2e-16 90.1 221 32.1
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.2e-16 90.1 224 30.8
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.2e-16 90.1 215 34.0
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.9e-16 89.7 209 30.1
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.9e-16 89.7 223 33.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 6.4e-16 88.6 216 33.8
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-15 87.8 220 33.2
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-15 87.8 220 33.2
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.1e-15 87.8 216 33.3
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-15 87.4 219 34.7
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.4e-15 87.4 219 34.7
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.9e-15 87.0 217 33.2
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.9e-15 87.0 112 49.1
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.2e-15 86.3 220 33.2
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-15 85.9 219 34.7
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 7.1e-15 85.1 220 32.7
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 7.1e-15 85.1 215 37.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 7.1e-15 85.1 224 44.2
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 9.3e-15 84.7 214 32.2
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-14 84.3 208 33.2
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 2.1e-14 83.6 216 31.9
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.1e-14 83.6 214 36.0
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.1e-14 83.6 214 36.0
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.1e-14 83.6 224 32.1
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.5e-14 82.8 206 31.1
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.0e-14 82.0 214 35.5
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.8e-13 80.5 214 43.9
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.9e-13 79.3 75 58.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 6.7e-13 78.6 226 33.2
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.5e-12 76.6 205 30.2
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.3e-12 76.3 208 31.7
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-12 76.3 208 31.7
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.3e-12 76.3 208 31.7
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.3e-12 76.3 81 53.1
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 4.3e-12 75.9 121 41.3
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-11 73.9 208 31.2
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.1e-11 73.6 206 32.5
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.8e-11 73.2 208 30.3
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 3.6e-11 72.8 206 30.1
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 8.1e-11 71.6 206 28.2
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 8.1e-11 71.6 206 28.2
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.4e-10 70.9 217 28.1
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.4e-10 70.1 202 30.7
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.1e-10 69.7 209 29.2
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 3.1e-10 69.7 216 28.7
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.0e-10 68.2 215 28.4
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 9.0e-10 68.2 209 29.2
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.5e-09 67.4 71 52.1
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.6e-09 66.6 208 29.8
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 4.5e-09 65.9 209 28.7
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-09 65.9 209 28.7
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 5.8e-09 65.5 86 47.7
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 5.8e-09 65.5 77 48.1
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 7.6e-09 65.1 206 29.6
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 7.6e-09 65.1 224 29.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.7e-08 63.9 72 51.4
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.2e-08 63.5 94 46.8
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.9e-08 62.4 110 41.8
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.9e-08 62.4 220 30.0
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 8.4e-08 61.6 55 54.5
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 8.4e-08 61.6 44 68.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.4e-07 60.1 55 52.7
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.5e-07 58.9 50 56.0
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.6e-06 57.4 52 53.8
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.1e-06 57.0 53 49.1
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 3.5e-06 56.2 76 42.1


User provided reference genes

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