Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 1.5e-59 233.4 203 100.0
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 3.3e-46 189.1 203 80.8
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.3e-45 187.2 203 71.4
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 6.2e-45 184.9 107 86.9
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 6.2e-45 184.9 107 86.9
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 6.2e-45 184.9 203 70.0
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.4e-44 183.7 213 76.5
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 1.4e-44 183.7 107 89.7
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 3.1e-44 182.6 107 86.0
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 3.1e-44 182.6 108 89.8
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 3.1e-44 182.6 108 89.8
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 9.0e-44 181.0 107 87.9
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 9.0e-44 181.0 107 87.9
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 9.0e-44 181.0 107 87.9
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 1.2e-43 180.6 107 88.8
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 1.2e-43 180.6 107 86.0
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.2e-43 180.6 107 86.0
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.5e-43 180.3 107 85.0
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.5e-43 180.3 104 87.5
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 2.0e-43 179.9 105 86.7
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.6e-43 179.5 107 85.0
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.6e-43 179.5 107 85.0
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 3.4e-43 179.1 105 86.7
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 3.4e-43 179.1 107 86.9
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.4e-43 179.1 107 86.9
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.4e-43 179.1 107 86.9
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 4.5e-43 178.7 107 86.9
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 4.5e-43 178.7 107 86.9
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 4.5e-43 178.7 112 83.9
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 5.8e-43 178.3 107 85.0
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 5.8e-43 178.3 107 86.0
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 5.8e-43 178.3 107 86.0
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 5.8e-43 178.3 107 84.1
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 7.6e-43 177.9 107 86.0
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 7.6e-43 177.9 106 85.8
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 7.6e-43 177.9 107 85.0
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 7.6e-43 177.9 107 85.0
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 9.9e-43 177.6 107 85.0
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 9.9e-43 177.6 107 86.0
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.3e-42 177.2 107 85.0
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.3e-42 177.2 107 85.0
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.3e-42 177.2 107 86.0
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.3e-42 177.2 107 86.0
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.7e-42 176.8 203 73.4
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.2e-42 176.4 203 76.4
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.9e-42 176.0 203 75.4
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 2.9e-42 176.0 106 84.0
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 2.9e-42 176.0 107 84.1
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 3.8e-42 175.6 107 85.0
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 3.8e-42 175.6 107 84.1
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 4.9e-42 175.3 107 85.0
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 4.9e-42 175.3 107 86.0
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 6.4e-42 174.9 104 86.5
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 6.4e-42 174.9 107 84.1
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 6.4e-42 174.9 106 84.0
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 6.4e-42 174.9 107 83.2
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 8.4e-42 174.5 202 73.3
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 8.4e-42 174.5 107 82.2
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 8.4e-42 174.5 107 82.2
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 8.4e-42 174.5 107 82.2
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 8.4e-42 174.5 107 82.2
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.4e-41 173.7 107 82.2
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.9e-41 173.3 106 83.0
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.9e-41 173.3 105 84.8
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 2.4e-41 172.9 107 82.2
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 4.2e-41 172.2 107 83.2
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.2e-41 172.2 107 82.2
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 7.1e-41 171.4 107 83.2
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 7.1e-41 171.4 107 81.3
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 7.1e-41 171.4 107 81.3
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.3e-41 171.0 105 82.9
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 2.1e-40 169.9 107 81.3
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 2.7e-40 169.5 107 81.3
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 2.7e-40 169.5 105 81.9
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.7e-40 169.5 105 82.9
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.7e-40 169.5 105 82.9
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.7e-40 169.5 107 81.3
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.7e-40 169.5 107 81.3
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 2.7e-40 169.5 107 83.2
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 4.6e-40 168.7 107 80.4
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 6.0e-40 168.3 107 81.3
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 7.9e-40 167.9 107 81.3
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 7.9e-40 167.9 104 81.7
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 7.9e-40 167.9 107 78.5
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.0e-39 167.5 107 77.6
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.0e-39 167.5 107 77.6
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.3e-39 167.2 107 80.4
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 3.0e-39 166.0 131 67.9
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 3.9e-39 165.6 107 79.4
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 3.9e-39 165.6 107 77.6
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 6.7e-39 164.9 105 79.0
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 8.7e-39 164.5 107 79.4
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 1.1e-38 164.1 105 79.0
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 1.1e-38 164.1 107 82.2
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-38 163.7 107 78.5
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-38 163.7 107 78.5
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 1.5e-38 163.7 107 78.5
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 1.5e-38 163.7 107 78.5
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.5e-38 163.7 108 81.5
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 1.5e-38 163.7 108 81.5
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.9e-38 163.3 107 77.6
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 2.5e-38 162.9 109 78.0
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 2.5e-38 162.9 109 78.0
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 2.5e-38 162.9 109 78.0
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 2.5e-38 162.9 109 78.0
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 2.5e-38 162.9 103 80.6
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 2.5e-38 162.9 103 80.6
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 3.3e-38 162.5 103 78.6
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.3e-38 162.2 107 78.5
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 5.6e-38 161.8 126 68.3
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 5.6e-38 161.8 107 76.6
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 7.4e-38 161.4 107 75.7
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 2.1e-37 159.8 107 77.6
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 2.1e-37 159.8 107 77.6
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 2.6e-35 152.9 183 52.5
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 3.4e-35 152.5 109 71.6
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 5.8e-35 151.8 109 69.7
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.0e-34 151.0 98 77.6
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.2e-32 144.1 268 65.3
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.6e-32 143.7 108 70.4
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 1.8e-31 140.2 108 67.6
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 1.3e-29 134.0 78 85.9
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 1.6e-29 133.7 76 88.2
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 4.8e-29 132.1 116 64.7
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 4.1e-28 129.0 76 85.5
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 5.3e-28 128.6 65 96.9
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 5.3e-28 128.6 65 96.9
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 2.6e-27 126.3 76 81.6
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 7.6e-27 124.8 74 83.8
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 6.5e-26 121.7 73 82.2
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.1e-25 120.9 227 39.2
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.9e-25 120.2 74 79.7
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 2.7e-24 116.3 76 73.7
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.9e-23 112.5 68 83.8
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 2.5e-22 109.8 65 84.6
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 6.9e-20 101.7 79 69.6
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 7.7e-19 98.2 134 51.5
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 1.0e-18 97.8 72 65.3
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 5.0e-18 95.5 84 63.1
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.1e-17 94.4 68 73.5
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 3.6e-16 89.4 108 54.6
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 3.6e-16 89.4 115 47.8
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 4.6e-16 89.0 104 51.9
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 6.1e-16 88.6 60 75.0
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 5.1e-15 85.5 80 58.8
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 2.0e-14 83.6 79 58.2
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.7e-13 80.5 77 57.1
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 1.3e-10 70.9 35 91.4
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 5.0e-10 68.9 88 47.7
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 6.5e-10 68.6 42 85.7
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 6.5e-10 68.6 42 85.7
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 6.5e-10 68.6 44 81.8
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 2.7e-08 63.2 42 78.6
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.0e-07 61.2 44 72.7
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 6.7e-07 58.5 39 76.9
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 2.6e-06 56.6 35 80.0
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 7.4e-06 55.1 42 69.0


User provided reference genes

Program Settings