Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.4e-53 211.8 104 100.0
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.4e-53 211.8 104 100.0
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.7e-36 155.2 97 77.3
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 4.3e-18 94.7 104 44.2
GSVIVG01021451001 Vitis vinifera HOM05D007839 ORTHO05D009924 4.3e-18 94.7 99 44.4
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 5.7e-18 94.4 101 48.5
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 7.4e-18 94.0 100 45.0
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 2.2e-17 92.4 104 44.2
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 2.2e-17 92.4 104 50.0
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 2.8e-17 92.0 102 48.0
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 4.8e-17 91.3 101 44.6
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 8.2e-17 90.5 105 38.1
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 1.1e-16 90.1 105 43.8
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 2.4e-16 89.0 106 43.4
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 3.1e-16 88.6 100 41.0
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 4.1e-16 88.2 100 41.0
AT2G34530 Arabidopsis thaliana HOM05D007839 ORTHO05D009924 1.2e-15 86.7 102 48.0
BcaB02g09533 Brassica carinata HOM05D007839 ORTHO05D009924 2.0e-15 85.9 102 46.1
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 2.0e-15 85.9 109 41.3
Haze_05595 Corylus avellana HOM05D007839 ORTHO05D009924 2.6e-15 85.5 106 40.6
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 2.6e-15 85.5 98 44.9
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 2.6e-15 85.5 100 41.0
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 4.5e-15 84.7 102 46.1
BcaB06g28780 Brassica carinata HOM05D007839 ORTHO05D009924 5.9e-15 84.3 99 45.5
Sp4g16790 Schrenkiella parvula HOM05D007839 ORTHO05D009924 7.7e-15 84.0 102 45.1
BcaC02g11515 Brassica carinata HOM05D007839 ORTHO05D009924 1.0e-14 83.6 102 46.1
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 1.7e-14 82.8 104 42.3
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 2.2e-14 82.4 107 41.1
AL4G30500 Arabidopsis lyrata HOM05D007839 ORTHO05D009924 2.9e-14 82.0 102 46.1
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 3.8e-14 81.6 109 43.1
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.1e-13 80.1 102 41.2
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 1.9e-13 79.3 102 42.2
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 3.2e-13 78.6 101 43.6
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 4.2e-13 78.2 107 35.5
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 5.5e-13 77.8 103 39.8
C04p63860 Brassica napus HOM05D007839 ORTHO05D009924 7.2e-13 77.4 103 43.7
BraA04t18149Z Brassica rapa HOM05D007839 ORTHO05D009924 7.2e-13 77.4 103 43.7
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 7.2e-13 77.4 103 41.7
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 1.6e-12 76.3 109 39.4
A04p26450 Brassica napus HOM05D007839 ORTHO05D009924 2.7e-12 75.5 100 44.0
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 2.7e-12 75.5 91 41.8
CsaV3_6G051740 Cucumis sativus L. HOM05D007839 ORTHO05D009924 2.7e-12 75.5 103 39.8
Sabra11G0067200 Salix brachista HOM05D007839 ORTHO05D009924 2.7e-12 75.5 100 39.0
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 3.6e-12 75.1 110 40.0
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 4.6e-12 74.7 98 42.9
BolC4t23033H Brassica oleracea HOM05D007839 ORTHO05D009924 6.1e-12 74.3 101 43.6
BraA05t20061Z Brassica rapa HOM05D007839 ORTHO05D009924 6.1e-12 74.3 101 43.6
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 6.1e-12 74.3 102 40.2
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 7.9e-12 73.9 103 37.9
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 1.8e-11 72.8 99 39.4
THA.LOC104814297 Tarenaya hassleriana HOM05D007839 ORTHO05D009924 1.8e-11 72.8 107 40.2
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 3.0e-11 72.0 106 39.6
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 3.0e-11 72.0 101 36.6
Gohir.A06G137400 Gossypium hirsutum HOM05D007839 ORTHO05D009924 3.9e-11 71.6 101 36.6
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 3.9e-11 71.6 101 36.6
Phvul.006G164900 Phaseolus vulgaris HOM05D007839 ORTHO05D009924 3.9e-11 71.6 107 41.1
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 8.8e-11 70.5 104 40.4
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 1.1e-10 70.1 106 40.6
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 1.1e-10 70.1 97 39.2
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 2.5e-10 68.9 99 38.4
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 1.3e-09 66.6 95 40.0
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 2.2e-09 65.9 94 41.5
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 6.3e-09 64.3 99 37.4
ATR1091G017 Amborella trichopoda HOM05D007839 ORTHO05D009924 1.2e-07 60.1 117 33.3
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 3.4e-07 58.5 59 49.2
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 7.7e-07 57.4 60 46.7
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 7.7e-07 57.4 60 46.7
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 7.7e-07 57.4 60 46.7
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 1.0e-06 57.0 60 46.7
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 1.3e-06 56.6 60 46.7
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 1.3e-06 56.6 60 46.7
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 1.3e-06 56.6 106 33.0
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 2.9e-06 55.5 60 45.0
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 2.9e-06 55.5 60 45.0
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 2.9e-06 55.5 60 45.0
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 3.8e-06 55.1 60 45.0
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 5.0e-06 54.7 60 43.3
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 5.0e-06 54.7 60 45.0
Gorai.010G238500 Gossypium raimondii HOM05D007839 ORTHO05D009924 6.5e-06 54.3 102 32.4
RcHm_v2.0_Chr5g0014111 Rosa chinensis HOM05D007839 ORTHO05D009924 6.5e-06 54.3 36 72.2
GSVIVG01021458001 Vitis vinifera HOM05D007839 ORTHO05D009924 6.5e-06 54.3 36 69.4
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 8.5e-06 53.9 60 43.3
Gohir.D06G204450 Gossypium hirsutum HOM05D007839 ORTHO05D009924 8.5e-06 53.9 102 32.4
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 8.5e-06 53.9 60 43.3


User provided reference genes

Program Settings