Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 0.0e+00 1242.6 630 100.0
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.3e-302 1041.2 624 85.7
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.3e-302 1041.2 627 84.4
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.1e-294 1016.1 618 84.1
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 3.4e-291 1004.6 628 83.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 9.9e-291 1003.0 607 83.9
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 9.9e-291 1003.0 620 83.1
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.2e-289 998.0 623 82.0
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 8.6e-287 989.9 595 83.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 9.5e-286 986.5 623 81.1
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 3.6e-285 984.6 604 82.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 3.1e-284 981.5 597 83.1
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.2e-283 979.5 605 82.5
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 7.6e-283 976.9 612 80.7
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 9.9e-283 976.5 621 81.2
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.2e-282 975.3 595 83.0
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 4.9e-282 974.2 602 81.9
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.4e-282 973.8 595 82.9
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 7.1e-281 970.3 608 81.4
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.6e-280 969.1 624 79.6
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.1e-280 968.8 609 81.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 2.7e-280 968.4 636 78.8
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 2.7e-280 968.4 621 78.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 6.0e-280 967.2 600 82.5
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.0e-279 966.5 639 79.8
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.3e-279 966.1 595 82.4
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.7e-279 965.7 608 80.3
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 6.6e-279 963.8 595 81.7
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.1e-278 963.0 623 79.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.1e-277 958.7 623 80.1
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 3.6e-277 958.0 620 79.2
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.8e-277 957.6 628 80.1
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.1e-276 956.4 639 78.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.1e-276 954.9 619 79.2
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.3e-276 954.1 610 79.3
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.2e-275 953.0 631 78.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.5e-275 952.6 637 78.6
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 3.4e-275 951.4 609 79.0
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 4.4e-275 951.0 631 78.3
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.3e-274 949.5 623 79.0
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.9e-274 948.3 597 80.4
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 6.4e-274 947.2 610 79.8
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.1e-273 946.4 637 78.2
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.2e-272 943.0 626 79.4
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.5e-272 941.4 622 78.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.3e-271 939.5 636 78.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.9e-271 937.9 609 79.3
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 6.6e-271 937.2 622 77.5
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 8.7e-271 936.8 645 76.9
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.5e-270 935.3 603 79.8
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 9.6e-270 933.3 622 77.8
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 8.1e-269 930.2 601 78.7
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.4e-268 929.5 604 78.6
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 2.4e-268 928.7 604 78.8
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.6e-267 925.2 601 78.0
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 3.4e-267 924.9 606 77.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 5.8e-267 924.1 604 78.5
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 8.4e-266 920.2 608 76.6
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.1e-265 919.8 604 78.1
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.9e-265 919.1 628 76.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.4e-265 918.7 590 79.3
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 4.2e-265 917.9 559 84.4
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 7.1e-265 917.1 601 77.7
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 3.5e-264 914.8 601 77.7
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.3e-263 912.9 636 75.8
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 6.7e-263 910.6 597 78.1
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 8.7e-263 910.2 603 78.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.5e-262 908.7 630 76.0
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.3e-262 908.3 579 80.3
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.8e-261 904.4 602 78.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 8.1e-261 903.7 622 76.0
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 6.9e-260 900.6 603 77.1
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 4.2e-257 891.3 590 75.6
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.2e-256 889.8 610 74.9
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.8e-255 885.9 601 74.7
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.0e-255 885.2 609 75.2
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.5e-254 882.9 612 74.5
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 5.3e-252 874.4 524 84.0
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 6.9e-252 874.0 609 74.5
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.3e-250 869.8 617 74.9
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 4.2e-249 864.8 526 82.3
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 6.1e-248 860.9 581 76.6
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.5e-246 856.3 628 71.8
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.4e-246 854.0 575 76.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.3e-245 853.2 670 67.5
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 8.2e-245 850.5 621 72.6
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.8e-244 849.4 599 74.3
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.1e-244 848.6 601 73.9
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.1e-244 848.2 613 71.5
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.6e-243 845.5 612 72.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 4.5e-243 844.7 578 75.3
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 2.2e-242 842.4 580 74.0
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.8e-242 841.6 611 72.2
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 3.8e-242 841.6 593 73.5
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 5.0e-242 841.3 593 73.9
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.9e-241 839.3 574 75.4
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.2e-241 838.2 617 72.0
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 5.5e-241 837.8 593 73.2
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.7e-240 835.5 610 71.8
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.3e-239 832.4 593 73.2
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 3.9e-239 831.6 593 73.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 3.9e-239 831.6 593 73.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 5.1e-239 831.2 622 70.7
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.0e-238 829.3 619 70.4
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.2e-237 825.9 615 69.4
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 8.2e-237 823.9 614 70.4
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.4e-236 823.2 606 73.4
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 6.9e-236 820.8 601 71.7
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.0e-235 819.3 551 75.9
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.6e-235 818.9 549 76.0
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.4e-233 813.1 572 74.5
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 4.2e-233 811.6 580 73.4
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.1e-232 809.3 596 71.8
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.7e-232 808.1 590 71.0
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 3.0e-231 805.4 571 75.3
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 6.3e-229 797.7 580 72.1
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.3e-229 797.7 608 68.4
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 5.3e-228 794.7 574 72.3
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 5.3e-228 794.7 574 72.3
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.8e-226 788.5 578 71.3
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.7e-223 777.7 582 70.3
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 6.7e-223 777.7 615 69.9
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.1e-220 770.4 597 68.7
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-218 763.5 637 64.5
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.9e-217 759.6 470 81.1
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.7e-216 755.7 550 70.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 6.8e-215 751.1 621 65.4
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.5e-214 750.0 624 63.9
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 8.3e-213 744.2 519 73.0
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.0e-211 739.6 516 73.8
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 4.7e-208 728.4 617 65.2
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.7e-208 728.4 620 64.7
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 7.5e-206 721.1 420 85.5
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.8e-204 716.5 414 86.0
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.7e-203 712.6 410 86.1
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 3.5e-203 712.2 563 66.8
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.5e-203 711.8 531 68.9
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.6e-202 707.6 545 67.2
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-201 706.4 578 63.8
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.5e-198 696.8 414 85.3
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 4.3e-193 678.7 495 69.9
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-191 674.1 523 66.2
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.0e-191 672.2 509 68.8
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.1e-188 664.1 507 67.1
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 5.6e-185 651.7 478 74.3
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.0e-170 604.4 578 54.7
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.5e-163 579.3 359 81.9
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.4e-159 566.6 479 60.5
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.9e-157 559.7 381 74.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 9.0e-151 538.1 522 57.9
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-143 514.6 341 76.8
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.3e-136 491.1 453 60.7
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.7e-109 401.0 239 82.8
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.6e-76 289.7 157 91.1
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-66 258.1 145 89.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.1e-46 191.4 159 61.0
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.3e-44 184.1 161 57.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 6.2e-43 179.9 156 57.7
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 4.0e-42 177.2 156 57.1
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 8.4e-40 169.5 123 69.9
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.0e-37 162.5 98 83.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 5.6e-28 130.2 95 68.4
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.2e-25 122.5 99 62.6
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.5e-23 113.6 115 55.7
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.3e-21 108.2 312 28.8
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.0e-21 107.8 513 25.5
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.7e-20 103.6 60 86.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.3e-16 92.4 126 38.9
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 5.0e-16 90.5 100 56.0
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 8.5e-16 89.7 86 54.7
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 3.2e-15 87.8 70 74.3
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.1e-14 85.1 190 31.1
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-14 84.7 195 34.4
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.2e-11 73.2 74 59.5
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 7.7e-09 66.6 56 51.8
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.7e-08 65.5 67 53.7


User provided reference genes

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