Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g09330_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D014600 4.0e-59 231.1 106 100.0
MBI07_g09332_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D000869 2.7e-15 85.5 43 88.4
Sed0025288 Sechium edule HOM05D000012 ORTHO05D000869 3.4e-10 68.6 43 69.8
Dinv34659 Davidia involucrata HOM05D000012 ORTHO05D000869 1.3e-09 66.6 41 73.2
Ca_08725_v3 Cicer arietinum L. HOM05D000012 ORTHO05D000869 1.7e-09 66.2 43 67.4
Glyma.19G167100 Glycine max HOM05D000012 ORTHO05D000869 1.7e-09 66.2 43 65.1
Medtr7g098150 Medicago truncatula HOM05D000012 ORTHO05D000869 1.7e-09 66.2 43 67.4
Medtr7g098160 Medicago truncatula HOM05D000012 ORTHO05D000869 1.7e-09 66.2 43 67.4
Medtr7g098040 Medicago truncatula HOM05D000012 ORTHO05D000869 2.2e-09 65.9 43 67.4
Aqoxy2G03716 Aquilegia oxysepala HOM05D000012 ORTHO05D000869 2.9e-09 65.5 45 71.1
ClCG07G001280 Citrullus lanatus HOM05D000012 ORTHO05D000869 2.9e-09 65.5 43 69.8
Glyma.03G165900 Glycine max HOM05D000012 ORTHO05D000869 2.9e-09 65.5 43 65.1
Prupe.8G218400 Prunus persica HOM05D000012 ORTHO05D000869 2.9e-09 65.5 43 69.8
CiPaw.03G268600 Carya illinoinensis HOM05D000012 ORTHO05D000869 4.9e-09 64.7 43 65.1
Thecc.01G253000 Theobroma cacao HOM05D000012 ORTHO05D000869 4.9e-09 64.7 43 65.1
Haze_24679 Corylus avellana HOM05D000012 ORTHO05D000869 6.4e-09 64.3 43 65.1
Glyma.19G167000 Glycine max HOM05D000012 ORTHO05D000869 6.4e-09 64.3 43 62.8
TWI12G1254 Tripterygium wilfordii HOM05D000012 ORTHO05D000869 6.4e-09 64.3 43 65.1
CSS0048037 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D000869 8.4e-09 63.9 41 65.9
TAR636G3597 Trochodendron aralioides HOM05D000012 ORTHO05D000869 8.4e-09 63.9 39 71.8
Atru.chr5.1800 Acer truncatum HOM05D000012 ORTHO05D000869 1.1e-08 63.5 40 70.0
Atru.chr5.1801 Acer truncatum HOM05D000012 ORTHO05D000869 1.1e-08 63.5 40 70.0
Lj1g0001214 Lotus japonicus HOM05D000012 ORTHO05D000869 1.1e-08 63.5 43 60.5
Medtr7g098090 Medicago truncatula HOM05D000012 ORTHO05D000869 1.4e-08 63.2 43 65.1
Duzib138G1062 Durio zibethinus HOM05D000012 ORTHO05D000869 1.9e-08 62.8 41 65.9
FvH4_2g20850 Fragaria vesca HOM05D000012 ORTHO05D000869 1.9e-08 62.8 43 67.4
Lj1g0007674 Lotus japonicus HOM05D000012 ORTHO05D000869 1.9e-08 62.8 43 65.1
RcHm_v2.0_Chr6g0287251 Rosa chinensis HOM05D000012 ORTHO05D000869 1.9e-08 62.8 43 67.4
TPR.G21517 Trifolium pratense HOM05D000012 ORTHO05D014600 1.9e-08 62.8 43 62.8
FAN15G2176 Fragaria x ananassa HOM05D000012 ORTHO05D000869 2.4e-08 62.4 41 68.3
GSVIVG01028391001 Vitis vinifera HOM05D000012 ORTHO05D000869 2.4e-08 62.4 43 62.8
GSVIVG01028392001 Vitis vinifera HOM05D000012 ORTHO05D000869 2.4e-08 62.4 42 64.3
Ciclev10023447m.g Citrus clementina HOM05D000012 ORTHO05D000869 3.2e-08 62.0 39 66.7
Duzib052G1032 Durio zibethinus HOM05D000012 ORTHO05D000869 3.2e-08 62.0 35 65.7
QL09p040953 Quercus lobata HOM05D000012 ORTHO05D000869 3.2e-08 62.0 43 62.8
MELO3C021761.2 Cucumis melo HOM05D000012 ORTHO05D014600 4.1e-08 61.6 43 60.5
Gohir.A07G150700 Gossypium hirsutum HOM05D000012 ORTHO05D000869 4.1e-08 61.6 41 63.4
Gohir.D07G157250 Gossypium hirsutum HOM05D000012 ORTHO05D008823 4.1e-08 61.6 41 63.4
Gorai.001G180200 Gossypium raimondii HOM05D000012 ORTHO05D000869 4.1e-08 61.6 41 63.4
Potri.002G258900 Populus trichocarpa HOM05D000012 ORTHO05D000869 4.1e-08 61.6 41 65.9
Potri.002G258700 Populus trichocarpa HOM05D000012 ORTHO05D000869 5.4e-08 61.2 40 65.0
TAR365G0794 Trochodendron aralioides HOM05D000012 ORTHO05D000869 5.4e-08 61.2 41 63.4
Cpa.g.sc165.44 Carica papaya HOM05D000012 ORTHO05D000869 7.1e-08 60.8 38 73.7
Cfa002468 Carpinus fangiana HOM05D000012 ORTHO05D000869 9.2e-08 60.5 43 62.8
COL.COLO4_08953 Corchorus olitorius HOM05D000012 ORTHO05D000869 9.2e-08 60.5 38 73.7
MELO3C031234.2 Cucumis melo HOM05D000012 ORTHO05D014600 9.2e-08 60.5 43 60.5
Ca_08727_v3 Cicer arietinum L. HOM05D000012 ORTHO05D000869 1.2e-07 60.1 43 62.8
Cc01_g17970 Coffea canephora HOM05D000012 ORTHO05D000869 1.2e-07 60.1 40 65.0
Phvul.001G163400 Phaseolus vulgaris HOM05D000012 ORTHO05D000869 1.2e-07 60.1 43 55.8
QL09p040918 Quercus lobata HOM05D000012 ORTHO05D008823 1.2e-07 60.1 43 62.8
Gohir.A07G204900 Gossypium hirsutum HOM05D000012 ORTHO05D000869 1.6e-07 59.7 38 71.1
Gohir.D07G210900 Gossypium hirsutum HOM05D000012 ORTHO05D000869 1.6e-07 59.7 38 71.1
Gorai.001G238300 Gossypium raimondii HOM05D000012 ORTHO05D000869 1.6e-07 59.7 38 71.1
Manes.13G037300 Manihot esculenta HOM05D000012 ORTHO05D000869 1.6e-07 59.7 43 60.5
Psat3g055360 Pisum sativum HOM05D000012 ORTHO05D000869 1.6e-07 59.7 43 58.1
Prupe.8G218300 Prunus persica HOM05D000012 ORTHO05D000869 1.6e-07 59.7 39 71.8
VMungo1383G2920 Vigna mungo HOM05D000012 ORTHO05D000869 1.6e-07 59.7 43 58.1
MELO3C012851.2 Cucumis melo HOM05D000012 ORTHO05D000869 2.1e-07 59.3 43 60.5
CsaV3_3G028210 Cucumis sativus L. HOM05D000012 ORTHO05D000869 2.1e-07 59.3 43 60.5
Eucgr.A01363 Eucalyptus grandis HOM05D000012 ORTHO05D000869 2.7e-07 58.9 39 71.8
FAN24G0407 Fragaria x ananassa HOM05D000012 ORTHO05D000869 2.7e-07 58.9 39 66.7
PGR031G3785 Punica granatum HOM05D000012 ORTHO05D000869 2.7e-07 58.9 38 71.1
Eucgr.A01361 Eucalyptus grandis HOM05D000012 ORTHO05D000869 3.5e-07 58.5 39 71.8
FAN15G0164 Fragaria x ananassa HOM05D000012 ORTHO05D000869 3.5e-07 58.5 43 58.1
FAN20G0295 Fragaria x ananassa HOM05D000012 ORTHO05D000869 3.5e-07 58.5 38 68.4
Duzib212G0377 Durio zibethinus HOM05D000012 ORTHO05D000869 4.6e-07 58.2 35 62.9
Psat3g055560 Pisum sativum HOM05D000012 ORTHO05D000869 4.6e-07 58.2 43 58.1
RcHm_v2.0_Chr6g0287241 Rosa chinensis HOM05D000012 ORTHO05D000869 4.6e-07 58.2 43 58.1
TPR.G25031 Trifolium pratense HOM05D000012 ORTHO05D008823 4.6e-07 58.2 43 58.1
FvH4_2g20840 Fragaria vesca HOM05D000012 ORTHO05D020692 6.0e-07 57.8 44 61.4
MD05G1192100 Malus domestica HOM05D000012 ORTHO05D000869 6.0e-07 57.8 43 65.1
Sabra02G0196900 Salix brachista HOM05D000012 ORTHO05D000869 6.0e-07 57.8 40 60.0
GSVIVG01027876001 Vitis vinifera HOM05D000012 ORTHO05D000869 6.0e-07 57.8 36 61.1
Zm00001eb003170 Zea mays HOM05D000012 ORTHO05D000869 6.0e-07 57.8 38 63.2
Cfa002467 Carpinus fangiana HOM05D000012 ORTHO05D000869 7.8e-07 57.4 38 65.8
Dinv29826 Davidia involucrata HOM05D000012 ORTHO05D000869 7.8e-07 57.4 35 62.9
MELO3C028698.2 Cucumis melo HOM05D000012 ORTHO05D014600 1.0e-06 57.0 43 55.8
Dinv27091 Davidia involucrata HOM05D000012 ORTHO05D000869 1.0e-06 57.0 35 65.7
FvH4_2g20841 Fragaria vesca HOM05D000012 ORTHO05D000869 1.0e-06 57.0 43 55.8
Duzib151G0292 Durio zibethinus HOM05D000012 ORTHO05D000869 1.3e-06 56.6 35 60.0
PSO170G4278 Papaver somniferum HOM05D000012 ORTHO05D000869 1.3e-06 56.6 42 57.1
TPR.G25010 Trifolium pratense HOM05D000012 ORTHO05D000869 1.3e-06 56.6 41 58.5
TAR362G1013 Trochodendron aralioides HOM05D000012 ORTHO05D000869 1.3e-06 56.6 35 62.9
Actinidia37540 Actinidia chinensis HOM05D000012 ORTHO05D000869 1.7e-06 56.2 38 68.4
MELO3C034166.2 Cucumis melo HOM05D000012 ORTHO05D014600 1.7e-06 56.2 43 58.1
DCAR_000588 Daucus carota HOM05D000012 ORTHO05D000869 1.7e-06 56.2 41 63.4
ClCG05G004110 Citrullus lanatus HOM05D000012 ORTHO05D000869 2.3e-06 55.8 32 75.0
Duzib151G0264 Durio zibethinus HOM05D000012 ORTHO05D000869 2.3e-06 55.8 35 60.0
Gohir.A02G041600 Gossypium hirsutum HOM05D000012 ORTHO05D000869 2.3e-06 55.8 35 60.0
Gohir.D02G047300 Gossypium hirsutum HOM05D000012 ORTHO05D000869 2.3e-06 55.8 35 60.0
Gohir.D07G157200 Gossypium hirsutum HOM05D000012 ORTHO05D000869 2.3e-06 55.8 38 68.4
Gorai.005G052500 Gossypium raimondii HOM05D000012 ORTHO05D000869 2.3e-06 55.8 35 60.0
Lj1g0017907 Lotus japonicus HOM05D000012 ORTHO05D000869 2.3e-06 55.8 38 65.8
Sabra08G0129900 Salix brachista HOM05D000012 ORTHO05D000869 2.3e-06 55.8 35 62.9
Thecc.04G260500 Theobroma cacao HOM05D000012 ORTHO05D000869 2.3e-06 55.8 35 60.0
TPR.G24984 Trifolium pratense HOM05D000012 ORTHO05D008823 2.3e-06 55.8 43 60.5
Actinidia30137 Actinidia chinensis HOM05D000012 ORTHO05D000869 3.0e-06 55.5 38 68.4
SGA_v2.0_scaffold43G16212 Striga asiatica HOM05D000012 ORTHO05D000869 3.0e-06 55.5 40 65.0
TPR.G9208 Trifolium pratense HOM05D000012 ORTHO05D000869 3.0e-06 55.5 38 63.2
CsaV3_3G011840 Cucumis sativus L. HOM05D000012 ORTHO05D000869 5.1e-06 54.7 32 68.8
PSO478G2397 Papaver somniferum HOM05D000012 ORTHO05D000869 5.1e-06 54.7 40 65.0
PSO765G0113 Papaver somniferum HOM05D000012 ORTHO05D000869 5.1e-06 54.7 42 54.8
Psat3g055440 Pisum sativum HOM05D000012 ORTHO05D000869 5.1e-06 54.7 43 58.1
PGR044G0242 Punica granatum HOM05D000012 ORTHO05D000869 5.1e-06 54.7 43 60.5
Cpa.g.sc44.20 Carica papaya HOM05D000012 ORTHO05D000869 6.6e-06 54.3 35 57.1
Ca_08732_v3 Cicer arietinum L. HOM05D000012 ORTHO05D000869 6.6e-06 54.3 43 55.8
MELO3C032984.2 Cucumis melo HOM05D000012 ORTHO05D014600 6.6e-06 54.3 43 55.8
Medtr7g098220 Medicago truncatula HOM05D000012 ORTHO05D000869 6.6e-06 54.3 43 62.8
Oeu064634.1 Olea europaea HOM05D000012 ORTHO05D000869 6.6e-06 54.3 38 65.8
Sed0003445 Sechium edule HOM05D000012 ORTHO05D000869 6.6e-06 54.3 40 62.5
ATR0789G089 Amborella trichopoda HOM05D000012 ORTHO05D000869 8.6e-06 53.9 30 73.3
CANSAT78G1343 Cannabis sativa HOM05D000012 ORTHO05D000869 8.6e-06 53.9 33 63.6
Lj1g0020893 Lotus japonicus HOM05D000012 ORTHO05D000869 8.6e-06 53.9 41 58.5


User provided reference genes

Program Settings