Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.9e-147 525.8 260 100.0
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.3e-99 365.2 261 69.0
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 2.0e-96 356.3 255 69.4
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.0e-96 356.3 246 70.7
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 5.8e-96 354.8 257 69.3
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 7.6e-96 354.4 260 67.3
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 2.4e-94 349.4 254 67.7
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 3.2e-94 349.0 248 70.6
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.2e-93 347.1 207 77.3
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.6e-93 346.7 254 68.1
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 3.5e-93 345.5 252 67.1
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 6.0e-93 344.7 258 65.1
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.8e-92 343.2 256 67.6
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 5.1e-92 341.7 203 78.8
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 6.7e-92 341.3 204 76.5
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.5e-91 340.1 212 73.6
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.5e-91 340.1 226 71.2
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.9e-91 339.7 207 76.8
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.9e-91 339.7 207 76.8
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 2.5e-91 339.3 200 77.0
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 5.6e-91 338.2 255 66.7
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 7.4e-91 337.8 251 66.1
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 2.8e-90 335.9 236 68.6
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 4.8e-90 335.1 255 65.9
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 4.8e-90 335.1 255 65.5
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 8.1e-90 334.3 255 65.9
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 8.1e-90 334.3 241 67.6
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 8.1e-90 334.3 257 64.6
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.1e-89 334.0 254 64.6
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.4e-89 333.6 261 62.1
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.4e-89 333.6 200 75.0
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.4e-89 333.6 203 76.8
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.4e-89 332.8 261 63.2
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 3.1e-89 332.4 203 74.4
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-89 332.4 203 74.4
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 5.3e-89 331.6 247 67.6
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 5.3e-89 331.6 257 62.6
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 6.9e-89 331.3 255 63.9
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 9.0e-89 330.9 200 74.5
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.5e-88 330.1 259 64.5
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.5e-88 330.1 231 68.0
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.5e-88 330.1 258 63.2
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.0e-88 329.7 247 65.6
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.4e-88 328.9 252 65.1
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 5.8e-88 328.2 251 64.5
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 5.8e-88 328.2 231 69.3
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 7.6e-88 327.8 258 63.2
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 9.9e-88 327.4 252 63.9
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.3e-87 327.0 258 62.8
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 1.3e-87 327.0 200 76.0
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 2.2e-87 326.2 234 65.4
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 2.2e-87 326.2 247 64.8
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.2e-87 326.2 247 64.8
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.2e-87 326.2 247 64.8
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 2.9e-87 325.9 259 63.7
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 3.8e-87 325.5 258 64.3
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 3.8e-87 325.5 232 66.4
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 3.8e-87 325.5 257 63.8
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 4.9e-87 325.1 205 72.7
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.9e-87 325.1 258 62.0
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 4.9e-87 325.1 262 64.9
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 6.4e-87 324.7 200 75.5
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 6.4e-87 324.7 257 63.4
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.1e-86 323.9 255 65.1
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.4e-86 323.6 202 71.8
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.4e-86 322.8 202 70.8
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.4e-86 322.8 202 70.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 3.2e-86 322.4 202 73.3
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 4.2e-86 322.0 244 63.1
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.5e-86 321.6 234 67.9
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 7.1e-86 321.2 251 62.9
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 9.3e-86 320.9 202 71.8
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 9.3e-86 320.9 254 63.8
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 1.2e-85 320.5 234 63.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.2e-85 320.5 202 70.8
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.6e-85 320.1 203 71.4
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 2.1e-85 319.7 202 70.8
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.1e-85 319.7 258 62.0
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 2.1e-85 319.7 200 73.5
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.1e-85 319.7 268 61.6
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.7e-85 319.3 254 62.2
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 4.6e-85 318.5 188 78.7
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 6.0e-85 318.2 200 71.0
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 6.0e-85 318.2 250 62.4
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 6.0e-85 318.2 251 60.6
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 3.0e-84 315.8 236 62.7
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 3.0e-84 315.8 236 62.7
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 3.0e-84 315.8 200 73.0
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 3.9e-84 315.5 200 70.5
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.1e-83 313.9 240 61.7
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.1e-83 313.9 198 73.2
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.9e-83 313.2 202 68.8
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-83 312.8 236 61.9
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.5e-83 312.8 224 65.2
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.3e-83 312.4 248 65.3
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 5.6e-83 311.6 236 64.0
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 7.4e-83 311.2 247 61.5
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 7.4e-83 311.2 247 60.7
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 3.7e-82 308.9 198 71.7
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.8e-81 306.6 224 63.8
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.5e-80 303.5 205 68.3
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.5e-79 298.1 294 53.4
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 4.2e-78 295.4 251 62.5
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 7.1e-78 294.7 170 79.4
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.7e-74 282.3 361 46.0
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.2e-71 273.1 254 55.9
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 5.1e-68 261.9 156 76.9
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.5e-67 260.4 301 48.5
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 4.5e-64 248.8 171 66.1
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 7.7e-64 248.1 135 84.4
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-58 230.7 209 56.5
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.2e-58 229.9 285 46.7
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 8.2e-58 228.0 193 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.4e-57 227.3 191 53.9
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.3e-57 225.3 148 70.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 2.2e-55 219.9 256 45.7
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 3.3e-51 206.1 117 81.2
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 5.7e-51 205.3 229 49.3
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 7.2e-46 188.3 241 45.2
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 9.4e-46 188.0 181 45.9
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 3.6e-45 186.0 154 57.8
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 3.3e-43 179.5 104 80.8
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.7e-42 176.0 169 52.7
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 7.0e-41 171.8 98 79.6
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.5e-40 169.1 98 78.6
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 5.0e-39 165.6 98 79.6
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 5.5e-38 162.2 132 60.6
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 7.2e-38 161.8 94 80.9
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 2.3e-36 156.8 131 58.0
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 7.5e-35 151.8 159 53.5
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.2e-34 150.2 84 76.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.0e-31 141.4 85 77.6
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 3.4e-27 126.3 181 42.5
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 1.7e-26 124.0 101 56.4
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 3.5e-24 116.3 89 64.0
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 3.5e-24 116.3 89 64.0
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 4.5e-24 115.9 69 78.3
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 5.9e-24 115.5 89 65.2
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 5.9e-24 115.5 92 64.1
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 2.3e-23 113.6 88 64.8
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 8.6e-23 111.7 75 61.3
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.1e-22 111.3 200 31.0
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 2.1e-21 107.1 100 57.0
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 7.0e-17 92.0 172 32.0
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 9.5e-14 81.6 76 53.9
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 6.2e-13 79.0 49 73.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 1.1e-12 78.2 44 79.5
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 1.1e-12 78.2 44 79.5
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 4.4e-11 72.8 54 55.6
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 2.9e-10 70.1 55 63.6
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 3.7e-10 69.7 42 81.0
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 8.3e-10 68.6 108 38.0
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 2.4e-09 67.0 56 57.1
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 7.0e-09 65.5 35 82.9
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 7.0e-09 65.5 35 82.9
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 9.2e-09 65.1 40 72.5
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 5.0e-07 59.3 77 36.4
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 2.5e-06 57.0 60 45.0
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 2.5e-06 57.0 40 62.5


User provided reference genes

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