Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 6.7e-60 233.8 116 100.0
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 5.6e-59 230.7 116 97.4
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.9e-54 215.7 115 88.7
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.9e-54 215.7 115 88.7
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 3.2e-54 214.9 116 87.9
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 4.2e-54 214.5 115 87.8
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 9.3e-54 213.4 115 88.7
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.6e-53 212.6 115 88.7
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.6e-53 212.6 115 88.7
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.5e-53 211.5 115 87.8
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 4.6e-53 211.1 115 86.1
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 7.9e-53 210.3 115 85.2
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 7.9e-53 210.3 115 86.1
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.3e-52 209.5 115 86.1
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.3e-52 209.5 115 86.1
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.8e-52 209.1 115 85.2
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.8e-52 209.1 115 86.1
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.8e-52 209.1 115 86.1
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.8e-52 209.1 115 86.1
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 83.5
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 3.9e-52 208.0 115 86.1
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.9e-52 208.0 115 86.1
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 3.9e-52 208.0 115 85.2
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 3.9e-52 208.0 115 86.1
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 5.1e-52 207.6 115 86.1
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 6.7e-52 207.2 113 85.0
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 8.7e-52 206.8 114 84.2
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.1e-51 206.5 114 86.8
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.1e-51 206.5 115 87.0
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.1e-51 206.5 115 86.1
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.5e-51 206.1 115 84.3
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.9e-51 205.7 115 85.2
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 2.5e-51 205.3 115 86.1
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.5e-51 205.3 115 85.2
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 3.3e-51 204.9 115 86.1
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.3e-51 204.5 115 84.3
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 5.7e-51 204.1 115 83.5
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 7.4e-51 203.8 115 84.3
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 7.4e-51 203.8 115 84.3
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 7.4e-51 203.8 115 84.3
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 7.4e-51 203.8 115 82.6
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.3e-50 203.0 115 84.3
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-50 203.0 115 84.3
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.3e-50 203.0 113 85.8
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.6e-50 202.6 115 81.7
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.6e-50 202.6 115 82.6
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.8e-50 201.8 114 86.0
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 3.7e-50 201.4 115 84.3
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.7e-50 201.4 114 84.2
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 3.7e-50 201.4 122 79.5
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 3.7e-50 201.4 115 84.3
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 83.6
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 4.8e-50 201.1 115 84.3
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 82.8
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 82.8
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 82.8
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 83.6
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 4.8e-50 201.1 113 85.0
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 4.8e-50 201.1 117 84.6
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 8.2e-50 200.3 115 82.6
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 1.1e-49 199.9 116 81.9
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 82.6
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.4e-49 199.5 116 83.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.4e-49 199.5 116 81.9
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.8e-49 199.1 116 81.9
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.8e-49 199.1 116 81.9
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.8e-49 199.1 116 81.9
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.8e-49 199.1 115 81.7
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 2.4e-49 198.7 116 82.8
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.4e-49 198.7 116 81.0
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 3.1e-49 198.4 116 81.9
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 3.1e-49 198.4 116 81.0
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 3.1e-49 198.4 111 83.8
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 4.1e-49 198.0 116 81.0
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 4.1e-49 198.0 116 81.0
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.3e-49 197.6 125 77.6
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 9.0e-49 196.8 115 81.7
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.2e-48 196.4 114 82.5
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.5e-48 196.1 116 81.0
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.5e-48 196.1 113 82.3
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.6e-48 195.3 115 80.9
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 2.6e-48 195.3 116 81.0
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 2.6e-48 195.3 116 81.0
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 2.6e-48 195.3 116 80.2
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 3.4e-48 194.9 117 81.2
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 3.4e-48 194.9 117 81.2
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 3.4e-48 194.9 115 81.7
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 3.4e-48 194.9 116 81.0
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 3.4e-48 194.9 116 81.0
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 3.4e-48 194.9 116 81.0
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 3.4e-48 194.9 116 81.0
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 3.4e-48 194.9 116 81.0
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 3.4e-48 194.9 116 81.0
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 7.7e-48 193.7 115 79.1
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.7e-48 193.7 115 80.9
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 7.7e-48 193.7 116 79.3
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.3e-47 193.0 115 76.5
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.7e-47 192.6 116 80.2
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.2e-47 192.2 116 79.3
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 5.0e-47 191.0 115 79.1
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 5.0e-47 191.0 114 79.8
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.1e-46 189.9 115 79.1
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.9e-46 189.1 118 78.0
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 4.2e-46 188.0 115 77.4
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 5.5e-46 187.6 115 76.5
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 5.5e-46 187.6 115 76.5
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 5.5e-46 187.6 117 80.3
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 7.2e-46 187.2 115 73.0
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.2e-45 186.4 116 78.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.7e-45 185.3 117 76.1
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 3.0e-44 181.8 112 78.6
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 8.8e-44 180.3 115 75.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.5e-43 179.5 127 69.3
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 2.0e-43 179.1 132 69.7
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 7.4e-43 177.2 165 56.4
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 9.7e-43 176.8 115 73.9
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 4.8e-42 174.5 115 75.7
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.8e-42 174.5 115 75.7
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 4.1e-41 171.4 97 85.6
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 4.1e-41 171.4 97 85.6
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 9.1e-41 170.2 100 81.0
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.6e-40 168.7 104 76.9
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.6e-40 168.7 96 85.4
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 5.9e-40 167.5 98 81.6
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 2.2e-39 165.6 117 73.5
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.7e-37 158.7 122 67.2
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 7.9e-37 157.1 98 78.6
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 5.1e-36 154.5 114 61.4
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.0e-35 152.5 98 73.5
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 3.3e-35 151.8 99 71.7
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.4e-35 150.6 96 78.1
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 4.8e-34 147.9 113 61.1
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 2.0e-32 142.5 116 57.8
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 2.6e-32 142.1 109 60.6
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.3e-31 139.8 95 74.7
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 4.2e-30 134.8 93 73.1
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.4e-25 119.0 115 54.8
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 2.2e-23 112.5 64 85.9
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.9e-23 112.1 69 79.7
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 2.9e-23 112.1 64 85.9
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.9e-23 112.1 80 66.2
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 8.5e-23 110.5 65 80.0
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 5.5e-22 107.8 66 81.8
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.2e-21 106.7 60 83.3
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 2.1e-21 105.9 60 83.3
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 3.6e-21 105.1 61 82.0
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 6.1e-21 104.4 64 76.6
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 4.0e-20 101.7 50 92.0
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.5e-19 99.8 50 90.0
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 2.0e-19 99.4 54 85.2
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 9.7e-19 97.1 70 70.0
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.3e-18 96.7 85 63.5
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.3e-18 96.7 50 84.0
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.8e-18 95.5 50 86.0
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 6.3e-18 94.4 52 78.8
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 3.1e-17 92.0 138 39.1
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.3e-15 86.7 129 40.3
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 1.2e-11 73.6 49 75.5
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 2.2e-10 69.3 72 50.0
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 1.7e-07 59.7 101 45.5
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 1.7e-07 59.7 35 82.9


User provided reference genes

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