Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.4e-47 191.8 95 100.0
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.2e-16 89.0 67 65.7
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 8.3e-16 87.0 62 71.0
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.4e-15 86.3 81 53.1
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.4e-15 86.3 63 68.3
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.4e-15 86.3 68 58.8
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.4e-15 85.5 61 67.2
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 7.0e-15 84.0 63 60.3
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 1.2e-14 83.2 60 63.3
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.6e-14 82.8 66 60.6
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.5e-14 81.3 56 66.1
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.5e-14 81.3 69 59.4
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.9e-14 80.9 62 66.1
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.9e-14 80.9 60 61.7
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.9e-14 80.9 65 58.5
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 7.7e-14 80.5 68 57.4
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 1.0e-13 80.1 61 62.3
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.0e-13 80.1 62 66.1
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.3e-13 79.7 68 57.4
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 2.3e-13 79.0 68 55.9
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.9e-13 78.6 56 66.1
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.9e-13 78.6 62 64.5
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.9e-13 78.6 62 64.5
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.9e-13 78.6 62 54.8
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.9e-13 78.6 59 62.7
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 5.0e-13 77.8 53 69.8
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 8.6e-13 77.0 62 58.1
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 8.6e-13 77.0 62 62.9
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.1e-12 76.6 71 50.7
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.1e-12 76.6 59 61.0
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.1e-12 76.6 53 67.9
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 1.1e-12 76.6 59 66.1
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 1.5e-12 76.3 58 60.3
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 1.5e-12 76.3 60 60.0
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.9e-12 75.9 60 68.3
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.5e-12 75.5 64 60.9
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.5e-12 75.5 68 58.8
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.5e-12 75.5 63 65.1
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 4.2e-12 74.7 59 57.6
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 4.2e-12 74.7 53 67.9
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 5.5e-12 74.3 53 64.2
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 5.5e-12 74.3 64 57.8
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 7.2e-12 73.9 59 55.9
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 7.2e-12 73.9 67 61.2
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 9.5e-12 73.6 59 57.6
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 9.5e-12 73.6 63 65.1
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.2e-11 73.2 48 70.8
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.6e-11 72.8 62 62.9
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 2.1e-11 72.4 56 60.7
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.1e-11 72.4 68 54.4
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 2.1e-11 72.4 61 50.8
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 2.8e-11 72.0 53 64.2
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 2.8e-11 72.0 54 63.0
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 4.7e-11 71.2 57 66.7
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 8.0e-11 70.5 73 54.8
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 8.0e-11 70.5 61 59.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 8.0e-11 70.5 53 64.2
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 8.0e-11 70.5 57 61.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 8.0e-11 70.5 72 54.2
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.0e-10 70.1 51 70.6
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.0e-10 70.1 54 64.8
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.4e-10 69.7 59 54.2
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.8e-10 69.3 59 52.5
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.8e-10 69.3 59 54.2
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.8e-10 69.3 59 54.2
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.8e-10 69.3 59 54.2
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.8e-10 69.3 70 57.1
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 2.3e-10 68.9 59 52.5
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 2.3e-10 68.9 59 52.5
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 2.3e-10 68.9 57 59.6
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.3e-10 68.9 61 60.7
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 2.3e-10 68.9 59 52.5
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 2.3e-10 68.9 60 55.0
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 3.0e-10 68.6 59 54.2
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 3.0e-10 68.6 59 54.2
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 3.0e-10 68.6 59 54.2
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 3.0e-10 68.6 50 68.0
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.0e-10 68.6 50 66.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.0e-10 68.2 50 68.0
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 5.2e-10 67.8 60 51.7
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.2e-10 67.8 51 58.8
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 6.8e-10 67.4 57 61.4
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.8e-10 67.4 57 61.4
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.8e-10 67.4 57 61.4
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.8e-10 67.4 57 61.4
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.8e-10 67.4 57 61.4
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 6.8e-10 67.4 61 60.7
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 8.8e-10 67.0 60 51.7
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 8.8e-10 67.0 60 51.7
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 8.8e-10 67.0 60 51.7
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.8e-10 67.0 61 60.7
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 1.2e-09 66.6 48 64.6
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-09 66.2 59 50.8
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.5e-09 66.2 67 52.2
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 1.5e-09 66.2 54 63.0
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.5e-09 66.2 57 63.2
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.5e-09 66.2 54 61.1
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.0e-09 65.9 69 56.5
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.0e-09 65.9 56 55.4
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.0e-09 65.9 53 60.4
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.6e-09 65.5 61 49.2
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 2.6e-09 65.5 78 51.3
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 2.6e-09 65.5 78 51.3
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 2.6e-09 65.5 53 58.5
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.4e-09 65.1 69 55.1
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.4e-09 64.7 53 54.7
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 4.4e-09 64.7 61 52.5
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 9.8e-09 63.5 60 50.0
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 2.8e-08 62.0 47 59.6
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 3.7e-08 61.6 59 49.2
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 3.7e-08 61.6 61 54.1
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 3.7e-08 61.6 58 53.4
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 3.7e-08 61.6 65 53.8
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 3.7e-08 61.6 59 54.2
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 6.3e-08 60.8 56 55.4
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 6.3e-08 60.8 48 50.0
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 60 58.3
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-07 60.1 59 47.5
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 59 47.5
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 59 47.5
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.1e-07 60.1 59 47.5
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.1e-07 60.1 59 47.5
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 59 54.2
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 1.1e-07 60.1 71 52.1
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.1e-07 60.1 57 56.1
AUR62019592 Chenopodium quinoa HOM05D005059 ORTHO05D004248 2.4e-07 58.9 65 50.8
AUR62037560 Chenopodium quinoa HOM05D005059 ORTHO05D004248 3.1e-07 58.5 65 49.2
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 3.1e-07 58.5 73 47.9
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.1e-07 58.2 56 46.4
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 7.0e-07 57.4 61 50.8
Lsat_1_v5_gn_7_102441 Lactuca sativa HOM05D005059 ORTHO05D004248 7.0e-07 57.4 66 47.0
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 9.2e-07 57.0 54 51.9
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 9.2e-07 57.0 60 56.7
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 1.2e-06 56.6 64 46.9
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.6e-06 56.2 56 46.4
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.6e-06 56.2 56 46.4
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 2.0e-06 55.8 58 53.4
Lsat_1_v5_gn_7_102341 Lactuca sativa HOM05D005059 ORTHO05D004248 2.0e-06 55.8 66 47.0
Aa31LG7G1380 Aethionema arabicum HOM05D009829 ORTHO05D012418 2.7e-06 55.5 63 46.0
Cpa.g.sc77.29 Carica papaya HOM05D067836 ORTHO05D043529 2.7e-06 55.5 59 52.5
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 3.5e-06 55.1 60 48.3
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 3.5e-06 55.1 60 50.0
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 4.5e-06 54.7 63 46.0
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.5e-06 54.7 60 46.7
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 5.9e-06 54.3 63 47.6
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 5.9e-06 54.3 60 48.3
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 5.9e-06 54.3 51 51.0
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 5.9e-06 54.3 66 45.5
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 7.8e-06 53.9 60 48.3
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 7.8e-06 53.9 60 48.3
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 7.8e-06 53.9 50 58.0


User provided reference genes

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