Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 3.3e-33 144.4 72 100.0
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.2e-22 109.4 58 91.4
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 5.3e-15 84.0 58 72.4
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 3.4e-14 81.3 53 69.8
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 4.5e-14 80.9 53 71.7
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 5.9e-14 80.5 58 69.0
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 7.7e-14 80.1 53 71.7
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 1.0e-13 79.7 53 75.5
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 1.0e-13 79.7 53 75.5
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 1.3e-13 79.3 53 75.5
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 1.3e-13 79.3 52 76.9
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 1.7e-13 79.0 53 69.8
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 1.7e-13 79.0 53 69.8
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 1.7e-13 79.0 53 73.6
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 2.2e-13 78.6 53 71.7
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 2.9e-13 78.2 51 74.5
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 2.9e-13 78.2 53 71.7
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 2.9e-13 78.2 49 75.5
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 3.8e-13 77.8 58 69.0
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 3.8e-13 77.8 49 75.5
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 3.8e-13 77.8 53 73.6
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 5.0e-13 77.4 59 67.8
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 6.5e-13 77.0 54 70.4
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 6.5e-13 77.0 48 79.2
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 6.5e-13 77.0 53 71.7
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 6.5e-13 77.0 53 73.6
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 8.5e-13 76.6 71 56.3
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 8.5e-13 76.6 51 70.6
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 8.5e-13 76.6 45 80.0
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 8.5e-13 76.6 56 67.9
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 1.1e-12 76.3 70 61.4
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 1.1e-12 76.3 51 74.5
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 1.9e-12 75.5 54 68.5
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 1.9e-12 75.5 51 74.5
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 2.5e-12 75.1 48 75.0
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 2.5e-12 75.1 53 69.8
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 2.5e-12 75.1 56 64.3
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 2.5e-12 75.1 49 73.5
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.5e-12 75.1 48 75.0
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 3.2e-12 74.7 55 72.7
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 4.2e-12 74.3 52 76.9
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 4.2e-12 74.3 58 70.7
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 4.2e-12 74.3 53 67.9
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 5.5e-12 73.9 52 71.2
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 5.5e-12 73.9 52 71.2
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 7.2e-12 73.6 52 69.2
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 7.2e-12 73.6 52 69.2
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 7.2e-12 73.6 53 71.7
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 9.4e-12 73.2 53 69.8
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 9.4e-12 73.2 53 69.8
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.2e-11 72.8 52 69.2
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 1.2e-11 72.8 54 68.5
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 2.1e-11 72.0 53 67.9
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 2.7e-11 71.6 53 66.0
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 3.6e-11 71.2 53 66.0
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 4.6e-11 70.9 53 64.2
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 4.6e-11 70.9 51 70.6
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 4.6e-11 70.9 52 65.4
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 6.1e-11 70.5 51 66.7
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 7.9e-11 70.1 53 69.8
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 1.0e-10 69.7 58 58.6
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 1.0e-10 69.7 53 64.2
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 1.0e-10 69.7 53 64.2
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 1.4e-10 69.3 52 65.4
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.4e-10 69.3 53 62.3
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 1.4e-10 69.3 53 66.0
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 1.8e-10 68.9 48 68.8
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 1.8e-10 68.9 48 68.8
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 1.8e-10 68.9 48 68.8
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 2.3e-10 68.6 53 64.2
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 2.3e-10 68.6 52 65.4
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 3.0e-10 68.2 58 60.3
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 3.0e-10 68.2 54 63.0
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 3.9e-10 67.8 48 66.7
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 3.9e-10 67.8 53 64.2
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 5.1e-10 67.4 48 66.7
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 5.1e-10 67.4 54 63.0
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 5.1e-10 67.4 48 66.7
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 1.1e-09 66.2 48 68.8
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.5e-09 65.9 61 57.4
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 2.0e-09 65.5 58 55.2
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 2.0e-09 65.5 58 55.2
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 3.3e-09 64.7 55 58.2
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 3.3e-09 64.7 55 58.2
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 3.3e-09 64.7 51 64.7
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 5.7e-09 63.9 40 72.5
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 7.4e-09 63.5 53 58.5
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 7.4e-09 63.5 55 58.2
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 9.7e-09 63.2 53 62.3
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 9.7e-09 63.2 53 64.2
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 9.7e-09 63.2 44 75.0
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 1.3e-08 62.8 55 58.2
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.7e-08 62.4 53 58.5
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 2.2e-08 62.0 45 71.1
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 3.7e-08 61.2 40 75.0
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 6.3e-08 60.5 44 65.9
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 6.3e-08 60.5 38 78.9
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 8.2e-08 60.1 53 60.4
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 1.4e-07 59.3 40 72.5
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.4e-07 58.5 40 70.0
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 4.1e-07 57.8 42 73.8
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.2e-06 56.2 60 50.0
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 2.0e-06 55.5 57 52.6
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 4.5e-06 54.3 40 65.0


User provided reference genes

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