Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g36652_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 4.5e-53 211.1 112 100.0
MBI03_g35425_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 3.5e-50 201.4 122 91.0
Nn1g09356 Nelumbo nucifera HOM05D006317 ORTHO05D007852 1.8e-41 172.6 122 73.8
ATR1101G062 Amborella trichopoda HOM05D006317 ORTHO05D007852 6.7e-41 170.6 122 74.6
RcHm_v2.0_Chr6g0296581 Rosa chinensis HOM05D006317 ORTHO05D007852 6.7e-41 170.6 122 73.8
Manes.02G167400 Manihot esculenta HOM05D006317 ORTHO05D007852 8.7e-41 170.2 122 73.0
Duzib041G0795 Durio zibethinus HOM05D006317 ORTHO05D007852 1.1e-40 169.9 122 72.1
Thecc.08G132100 Theobroma cacao HOM05D006317 ORTHO05D007852 1.1e-40 169.9 122 72.1
TAR375G0871 Trochodendron aralioides HOM05D006317 ORTHO05D007852 1.5e-40 169.5 122 72.1
GSVIVG01036785001 Vitis vinifera HOM05D006317 ORTHO05D007852 2.5e-40 168.7 122 73.8
Manes.18G081900 Manihot esculenta HOM05D006317 ORTHO05D007852 4.3e-40 167.9 122 72.1
CsaV3_6G034090 Cucumis sativus L. HOM05D006317 ORTHO05D007852 5.7e-40 167.5 122 71.3
Sed0004620 Sechium edule HOM05D006317 ORTHO05D007852 5.7e-40 167.5 122 72.1
Duzib116G0606 Durio zibethinus HOM05D006317 ORTHO05D007852 9.7e-40 166.8 122 70.5
Sc10g0008060 Simmondsia chinensis HOM05D006317 ORTHO05D007852 1.3e-39 166.4 122 69.7
FvH4_2g27730 Fragaria vesca HOM05D006317 ORTHO05D007852 2.8e-39 165.2 122 70.5
FAN20G1754 Fragaria x ananassa HOM05D006317 ORTHO05D007852 2.8e-39 165.2 122 70.5
Prupe.1G490600 Prunus persica HOM05D006317 ORTHO05D007852 3.7e-39 164.9 122 72.1
Atru.chr13.1550 Acer truncatum HOM05D006317 ORTHO05D007852 8.2e-39 163.7 122 71.3
Ciclev10002865m.g Citrus clementina HOM05D006317 ORTHO05D007852 8.2e-39 163.7 122 68.9
FAN24G3505 Fragaria x ananassa HOM05D006317 ORTHO05D007852 8.2e-39 163.7 122 69.7
Dinv27277 Davidia involucrata HOM05D006317 ORTHO05D007852 1.1e-38 163.3 122 70.5
MELO3C010655.2 Cucumis melo HOM05D006317 ORTHO05D007852 1.4e-38 162.9 122 70.5
Potri.019G066600 Populus trichocarpa HOM05D006317 ORTHO05D007852 1.4e-38 162.9 121 69.4
CSS0027136 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 2.4e-38 162.2 122 69.7
Oeu051968.1 Olea europaea HOM05D006317 ORTHO05D007852 2.4e-38 162.2 122 72.1
CSS0008085 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 3.1e-38 161.8 122 69.7
CANSAT35G0412 Cannabis sativa HOM05D006317 ORTHO05D007852 3.1e-38 161.8 122 69.7
CSS0006686 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 4.1e-38 161.4 122 69.7
QL09p032738 Quercus lobata HOM05D006317 ORTHO05D007852 4.1e-38 161.4 120 70.8
Rhsim11G0071000 Rhododendron simsii HOM05D006317 ORTHO05D007852 4.1e-38 161.4 122 69.7
Sed0014816 Sechium edule HOM05D006317 ORTHO05D007852 4.1e-38 161.4 122 69.7
Hma1.2p1_0420F.1_g149670 Hydrangea macrophylla HOM05D006317 ORTHO05D007852 5.3e-38 161.0 121 68.6
TWI32G0551 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 5.3e-38 161.0 120 69.2
Cpa.g.sc64.145 Carica papaya HOM05D006317 ORTHO05D007852 9.1e-38 160.2 122 68.9
Cfa018120 Carpinus fangiana HOM05D006317 ORTHO05D007852 9.1e-38 160.2 120 70.0
Dinv14667 Davidia involucrata HOM05D006317 ORTHO05D007852 9.1e-38 160.2 122 68.9
Gohir.A05G237800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 3.4e-37 158.3 122 68.9
Gohir.D05G239800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 3.4e-37 158.3 122 68.9
Gorai.009G248700 Gossypium raimondii HOM05D006317 ORTHO05D007852 3.4e-37 158.3 122 68.9
TWI34G0863 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 3.4e-37 158.3 120 69.2
MSTRG.25364 Avicennia marina HOM05D006317 ORTHO05D007852 4.5e-37 157.9 120 68.3
Eucgr.D00248 Eucalyptus grandis HOM05D006317 ORTHO05D007852 5.9e-37 157.5 122 68.0
Actinidia29484 Actinidia chinensis HOM05D006317 ORTHO05D007852 1.0e-36 156.8 119 70.6
Oeu021883.1 Olea europaea HOM05D006317 ORTHO05D007852 1.0e-36 156.8 122 69.7
THA.LOC104813677 Tarenaya hassleriana HOM05D006317 ORTHO05D007852 1.0e-36 156.8 122 68.9
Aqoxy1G01739 Aquilegia oxysepala HOM05D006317 ORTHO05D007852 1.3e-36 156.4 122 68.9
PGR044G1554 Punica granatum HOM05D006317 ORTHO05D007852 1.3e-36 156.4 122 68.0
Ah.01g020580 Amaranthus hybridus HOM05D006317 ORTHO05D007852 2.9e-36 155.2 122 67.2
Nitab4.5_0001168g0010 Nicotiana tabacum HOM05D006317 ORTHO05D007852 6.5e-36 154.1 122 65.6
Cc10_g12550 Coffea canephora HOM05D006317 ORTHO05D007852 1.1e-35 153.3 120 70.0
Nitab4.5_0002045g0100 Nicotiana tabacum HOM05D006317 ORTHO05D007852 1.4e-35 152.9 122 65.6
CAN.G342.14 Capsicum annuum HOM05D006317 ORTHO05D007852 1.9e-35 152.5 122 65.6
CiPaw.15G032500 Carya illinoinensis HOM05D006317 ORTHO05D007852 1.9e-35 152.5 120 66.7
Migut.N03266 Erythranthe guttata HOM05D006317 ORTHO05D007852 3.2e-35 151.8 115 70.4
Peaxi162Scf01003g00121 Petunia axillaris HOM05D006317 ORTHO05D007852 3.2e-35 151.8 122 65.6
ECA246G3352 Erigeron canadensis HOM05D006317 ORTHO05D007852 5.5e-35 151.0 122 65.6
Lsat_1_v5_gn_6_109060 Lactuca sativa HOM05D006317 ORTHO05D007852 9.4e-35 150.2 122 64.8
Solyc11g005000.2 Solanum lycopersicum HOM05D006317 ORTHO05D007852 9.4e-35 150.2 122 65.6
Thhalv10019323m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 1.2e-34 149.8 122 64.8
VMungo1309G0699 Vigna mungo HOM05D006317 ORTHO05D007852 1.2e-34 149.8 120 66.7
AUR62016336 Chenopodium quinoa HOM05D006317 ORTHO05D007852 1.6e-34 149.4 122 65.6
Lalb_Chr23g0271161 Lupinus albus HOM05D006317 ORTHO05D007852 1.6e-34 149.4 121 65.3
Phvul.009G129100 Phaseolus vulgaris HOM05D006317 ORTHO05D007852 2.1e-34 149.1 120 65.8
Glyma.06G116700 Glycine max HOM05D006317 ORTHO05D007852 3.6e-34 148.3 120 64.2
Glyma.04G246100 Glycine max HOM05D006317 ORTHO05D007852 4.7e-34 147.9 120 65.0
AT1G77350 Arabidopsis thaliana HOM05D006317 ORTHO05D007852 6.1e-34 147.5 123 65.0
Aa31LG4G7370 Aethionema arabicum HOM05D006317 ORTHO05D007852 7.9e-34 147.1 122 63.9
A06p17730 Brassica napus HOM05D006317 ORTHO05D007852 7.9e-34 147.1 122 63.1
Carub.0002s2423 Capsella rubella HOM05D006317 ORTHO05D007852 7.9e-34 147.1 122 63.1
CARHR070830 Cardamine hirsuta HOM05D006317 ORTHO05D007852 7.9e-34 147.1 122 63.9
Sp1g19190 Schrenkiella parvula HOM05D006317 ORTHO05D007852 7.9e-34 147.1 122 63.9
A08p28870 Brassica napus HOM05D006317 ORTHO05D007852 1.0e-33 146.7 122 63.9
CDE06G2198 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 1.0e-33 146.7 122 64.8
unitig_22.g5398 Utricularia gibba HOM05D006317 ORTHO05D007852 1.4e-33 146.4 120 67.5
Sopen11g001020 Solanum pennellii HOM05D006317 ORTHO05D007852 1.8e-33 146.0 122 63.9
BcaB07g32159 Brassica carinata HOM05D006317 ORTHO05D007852 2.3e-33 145.6 122 62.3
Lj1g0010212 Lotus japonicus HOM05D006317 ORTHO05D007852 2.3e-33 145.6 120 65.8
PGSC0003DMG400006049 Solanum tuberosum HOM05D006317 ORTHO05D007852 2.3e-33 145.6 122 63.9
C08p20980 Brassica napus HOM05D006317 ORTHO05D007852 3.0e-33 145.2 122 63.1
BolC8t49735H Brassica oleracea HOM05D006317 ORTHO05D007852 3.0e-33 145.2 122 63.1
Medtr3g088525 Medicago truncatula HOM05D006317 ORTHO05D007852 3.0e-33 145.2 120 63.3
Lalb_Chr08g0241161 Lupinus albus HOM05D006317 ORTHO05D007852 3.9e-33 144.8 120 65.0
BraA06t24865Z Brassica rapa HOM05D006317 ORTHO05D007852 5.1e-33 144.4 122 61.5
unitig_8.g3836 Utricularia gibba HOM05D006317 ORTHO05D007852 5.1e-33 144.4 120 67.5
BraA08t34818Z Brassica rapa HOM05D006317 ORTHO05D007852 1.1e-32 143.3 122 62.3
Psat5g085080 Pisum sativum HOM05D006317 ORTHO05D007852 1.5e-32 142.9 120 63.3
CDE07G1891 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 2.0e-32 142.5 122 64.8
ClCG08G005990 Citrullus lanatus HOM05D006317 ORTHO05D007852 2.0e-32 142.5 172 50.0
Thhalv10009123m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 2.0e-32 142.5 123 63.4
Sabra19G0078300 Salix brachista HOM05D006317 ORTHO05D007852 4.4e-32 141.4 135 59.3
Zm00001eb128810 Zea mays HOM05D006317 ORTHO05D007852 5.7e-32 141.0 122 62.3
SGA_v2.0_scaffold25G11134 Striga asiatica HOM05D006317 ORTHO05D007852 9.7e-32 140.2 109 68.8
arahy.Tifrunner.gnm1.ann1.0GY0RD Arachis hypogaea HOM05D006317 ORTHO05D007852 1.3e-31 139.8 112 67.0
arahy.Tifrunner.gnm1.ann1.ID1H8K Arachis hypogaea HOM05D006317 ORTHO05D007852 1.3e-31 139.8 112 67.0
HanXRQChr05g0148711 Helianthus annuus HOM05D006317 ORTHO05D007852 1.3e-31 139.8 115 65.2
SHI09189 Sapria himalayana HOM05D006317 ORTHO05D007852 2.8e-31 138.7 131 56.5
SalBow2G0856 Salvia bowleyana HOM05D006317 ORTHO05D007852 1.1e-30 136.7 113 67.3
BcaB03g14259 Brassica carinata HOM05D006317 ORTHO05D007852 2.4e-30 135.6 122 60.7
BcaC06g34898 Brassica carinata HOM05D006317 ORTHO05D007852 2.4e-30 135.6 121 62.0
BolC7t42733H Brassica oleracea HOM05D006317 ORTHO05D007852 2.4e-30 135.6 121 62.0
Mapoly0014s0111 Marchantia polymorpha HOM05D006317 ORTHO05D007852 3.1e-30 135.2 115 60.0
A07p14980 Brassica napus HOM05D006317 ORTHO05D007852 4.1e-30 134.8 121 62.0
BraA07t29244Z Brassica rapa HOM05D006317 ORTHO05D007852 4.1e-30 134.8 121 62.0
HPP92_021212 Vanilla planifolia HOM05D006317 ORTHO05D007852 5.3e-30 134.4 122 63.1
C07p22030 Brassica napus HOM05D006317 ORTHO05D007852 6.9e-30 134.0 120 61.7
AagrBONN_evm.TU.Sc2ySwM_344.4689 Anthoceros agrestis HOM05D006317 ORTHO05D007852 3.4e-29 131.7 119 60.5
Os05g0486200 Oryza sativa ssp. japonica HOM05D006317 ORTHO05D007852 4.5e-29 131.3 123 58.5
AL2G37550 Arabidopsis lyrata HOM05D006317 ORTHO05D007852 1.3e-28 129.8 148 53.4
COL.COLO4_05688 Corchorus olitorius HOM05D006317 ORTHO05D007852 6.7e-25 117.5 91 69.2
SMO298G0052 Selaginella moellendorffii HOM05D006317 ORTHO05D007852 2.6e-24 115.5 101 61.4
FAN27G3154 Fragaria x ananassa HOM05D006317 ORTHO05D007852 5.7e-24 114.4 91 65.9
vmacro00858 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 2.2e-23 112.5 97 64.9
vmacro16444 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 6.3e-23 110.9 94 66.0
CBR_g12067 Chara braunii HOM05D006317 ORTHO05D007852 4.1e-22 108.2 103 56.3
EL10Ac9g21899 Beta vulgaris HOM05D006317 ORTHO05D007852 7.7e-21 104.0 91 61.5
Haze_17997 Corylus avellana HOM05D001650 ORTHO05D001592 9.4e-19 97.1 62 71.0
BcaB03g14260 Brassica carinata HOM05D006317 ORTHO05D007852 6.7e-17 90.9 125 44.8
Nn7g37402 Nelumbo nucifera HOM05D006317 ORTHO05D007852 2.6e-16 89.0 70 67.1
DCAR_018876 Daucus carota HOM05D006317 ORTHO05D007852 1.2e-13 80.1 69 65.2
SGA_v2.0_scaffold28G11977 Striga asiatica HOM05D006317 ORTHO05D007852 6.5e-12 74.3 59 69.5
Gohir.A02G071601 Gossypium hirsutum HOM05D006317 ORTHO05D007852 4.2e-11 71.6 50 78.0
BolC5t30761H Brassica oleracea HOM05D006317 ORTHO05D007852 8.0e-10 67.4 53 67.9
QL05p046423 Quercus lobata HOM05D006317 ORTHO05D007852 4.0e-09 65.1 51 60.8


User provided reference genes

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