Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 0.0e+00 1088.2 553 100.0
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 6.2e-164 581.6 568 57.4
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 9.9e-162 574.3 554 57.9
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.4e-161 571.6 575 55.7
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.2e-160 568.9 544 57.4
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.6e-159 565.5 555 57.3
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.5e-157 560.5 560 56.8
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 3.3e-157 559.3 562 56.6
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 4.3e-157 558.9 549 57.6
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 4.8e-156 555.4 575 55.0
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 2.4e-155 553.1 556 55.2
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.0e-154 550.1 574 54.2
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 2.0e-154 550.1 569 55.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 5.8e-154 548.5 560 53.2
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.3e-153 547.4 556 55.6
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.3e-153 547.4 560 53.0
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.2e-153 546.6 557 54.9
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.9e-153 546.2 562 55.7
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 3.8e-153 545.8 564 55.5
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 3.8e-153 545.8 574 54.5
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.2e-152 542.7 572 53.3
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 3.2e-152 542.7 542 56.8
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 7.1e-152 541.6 562 53.9
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.1e-151 540.0 563 54.5
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 2.1e-151 540.0 541 56.6
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 2.7e-151 539.7 560 54.3
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.7e-151 539.7 563 54.4
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.6e-151 538.9 562 53.9
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 6.0e-151 538.5 576 54.0
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 7.9e-151 538.1 535 56.6
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.8e-150 537.0 578 50.9
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.3e-150 536.6 560 54.1
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 6.7e-150 535.0 562 53.6
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 8.7e-150 534.6 539 54.9
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.1e-149 534.3 562 53.6
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.9e-149 533.5 576 53.6
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.9e-149 533.5 560 53.2
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 3.3e-149 532.7 534 53.6
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.3e-149 532.3 566 53.0
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.6e-148 530.4 559 53.0
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.1e-148 530.0 588 52.7
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 3.7e-148 529.3 563 52.6
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 4.8e-148 528.9 560 54.1
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 8.2e-148 528.1 591 53.0
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 8.2e-148 528.1 564 53.7
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.4e-147 527.3 564 52.5
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 6.9e-147 525.0 572 53.3
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 9.0e-147 524.6 560 53.8
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 9.0e-147 524.6 589 50.4
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.5e-146 523.9 568 52.6
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.5e-146 523.9 545 53.9
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.5e-146 523.9 559 53.5
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.6e-146 523.1 542 53.3
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.6e-146 523.1 566 53.4
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.4e-146 522.7 556 53.1
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 3.4e-146 522.7 591 50.4
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.3e-145 520.8 561 51.0
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.7e-145 520.4 544 54.6
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.5e-144 516.5 545 53.4
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 5.5e-144 515.4 564 52.3
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 9.3e-144 514.6 585 50.3
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 9.3e-144 514.6 556 50.4
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.1e-143 513.5 566 51.9
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.7e-143 513.1 568 50.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.5e-143 512.7 557 51.7
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 4.6e-143 512.3 552 51.6
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 4.6e-143 512.3 547 52.5
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 4.6e-143 512.3 560 51.1
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 6.1e-143 511.9 556 52.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 3.9e-142 509.2 540 53.1
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 8.7e-142 508.1 543 51.4
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.7e-142 508.1 532 52.6
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.2e-140 503.4 496 55.6
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 3.7e-140 502.7 567 50.8
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 2.4e-139 500.0 593 46.9
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 6.9e-139 498.4 527 52.4
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.5e-138 497.3 556 51.3
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.5e-138 497.3 556 51.3
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.0e-138 496.9 531 52.4
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.0e-138 496.9 531 52.4
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 4.5e-138 495.7 562 50.2
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.3e-137 494.2 543 50.8
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.2e-137 493.4 543 51.4
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.8e-137 492.7 550 50.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 5.0e-137 492.3 571 49.7
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 5.0e-137 492.3 574 50.3
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 8.5e-137 491.5 546 51.1
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 8.5e-137 491.5 531 51.6
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 2.7e-135 486.5 570 49.5
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-134 483.8 543 51.0
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.2e-130 471.1 567 49.6
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.7e-127 459.9 499 50.9
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.0e-126 458.0 498 50.8
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.4e-126 457.6 604 47.4
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.3e-121 441.0 568 47.4
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.6e-114 417.5 461 51.4
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.5e-113 411.8 527 46.3
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.0e-110 403.3 472 50.6
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 4.0e-110 402.9 531 43.9
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 8.8e-110 401.7 478 48.3
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 2.6e-109 400.2 559 43.8
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 8.3e-108 395.2 539 43.2
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 1.7e-105 387.5 556 44.6
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 8.3e-100 368.6 267 68.2
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 5.6e-96 355.9 243 72.0
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.2e-90 338.2 420 47.6
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 7.8e-90 335.5 239 68.6
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 7.8e-90 335.5 239 68.6
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 2.4e-83 313.9 199 75.4
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 2.4e-83 313.9 199 75.4
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.1e-78 297.0 269 59.1
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 7.3e-72 275.8 404 42.3
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.5e-69 268.1 392 41.1
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 5.8e-69 266.2 182 70.9
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 7.6e-69 265.8 198 66.2
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 9.9e-69 265.4 358 41.6
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 6.8e-62 242.7 178 69.7
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 6.4e-60 236.1 358 44.1
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.0e-57 227.3 237 56.1
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.1e-57 226.5 206 60.7
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.1e-57 226.5 163 69.3
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 7.6e-53 212.6 221 54.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.3e-49 201.1 318 41.5
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 5.6e-48 196.4 210 55.2
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 7.4e-48 196.1 309 40.8
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 4.8e-39 166.8 169 55.0
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.6e-37 161.0 158 55.1
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-33 149.1 150 52.7
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 3.9e-33 147.1 573 24.1
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.2e-31 139.4 245 38.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.9e-27 128.3 137 49.6
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.1e-26 123.2 114 55.3
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.3e-24 117.5 160 48.8
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 6.5e-20 103.2 548 26.6
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 4.6e-18 97.1 54 81.5
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.9e-14 83.2 95 46.3
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.7e-12 78.6 147 38.8
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-11 75.5 78 47.4
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.5e-11 74.7 324 28.4
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.1e-10 71.6 53 67.9
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.7e-09 66.6 107 39.3
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 8.8e-09 66.2 154 33.1
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.0e-08 65.1 57 49.1
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.3e-07 62.4 49 65.3


User provided reference genes

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