Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g34025_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 8.5e-151 537.0 266 100.0
MBI06_g20927_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 2.1e-125 452.6 269 87.7
TAR629G2502 Trochodendron aralioides HOM05D000010 ORTHO05D000063 9.0e-36 154.8 294 38.8
Nn4g24728 Nelumbo nucifera HOM05D000010 ORTHO05D000063 2.0e-35 153.7 300 37.3
TAR227G0002 Trochodendron aralioides HOM05D000010 ORTHO05D000063 1.0e-34 151.4 282 40.8
MBI08_g16125_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 1.3e-34 151.0 297 39.7
GSVIVG01035214001 Vitis vinifera HOM05D000010 ORTHO05D000063 1.2e-32 144.4 281 38.1
MBI08_g28718_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 4.8e-29 132.5 224 40.6
QL02p064244 Quercus lobata HOM05D000010 ORTHO05D000063 3.1e-28 129.8 282 36.2
Prupe.3G014400 Prunus persica HOM05D000010 ORTHO05D000063 4.5e-27 125.9 297 34.3
Aqoxy3G04156 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 7.7e-27 125.2 291 32.0
Actinidia40415 Actinidia chinensis HOM05D000010 ORTHO05D000063 3.8e-26 122.9 273 33.7
FAN28G1629 Fragaria x ananassa HOM05D000010 ORTHO05D000063 5.0e-26 122.5 299 33.1
PSO782G4912 Papaver somniferum HOM05D000010 ORTHO05D000063 8.5e-26 121.7 286 35.0
PSO782G2931 Papaver somniferum HOM05D000010 ORTHO05D000063 1.9e-25 120.6 256 36.7
FvH4_1g27330 Fragaria vesca HOM05D000010 ORTHO05D000063 2.5e-25 120.2 299 32.8
FAN26G2900 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.5e-25 120.2 299 32.4
Hma1.2p1_0034F.1_g021410 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 2.5e-25 120.2 283 34.3
PSO063G0909 Papaver somniferum HOM05D000010 ORTHO05D000063 3.2e-25 119.8 286 34.6
MD09G1279900 Malus domestica HOM05D000010 ORTHO05D000063 4.2e-25 119.4 297 33.3
PSO832G4375 Papaver somniferum HOM05D000010 ORTHO05D000063 9.4e-25 118.2 256 35.9
Glyma.11G212400 Glycine max HOM05D000010 ORTHO05D000063 1.6e-24 117.5 285 34.4
RcHm_v2.0_Chr3g0488761 Rosa chinensis HOM05D000010 ORTHO05D000063 7.9e-24 115.2 264 33.3
FAN19G0740 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.3e-23 113.6 225 36.0
MD17G1286600 Malus domestica HOM05D000010 ORTHO05D000063 3.0e-23 113.2 298 33.6
Rhsim08G0021400 Rhododendron simsii HOM05D000010 ORTHO05D000063 3.9e-23 112.8 278 34.9
Actinidia17163 Actinidia chinensis HOM05D000010 ORTHO05D000063 5.1e-23 112.5 261 32.2
Glyma.18G043900 Glycine max HOM05D000010 ORTHO05D000063 1.1e-22 111.3 289 33.2
VMungo0647G1689 Vigna mungo HOM05D000010 ORTHO05D000063 1.1e-22 111.3 284 31.7
Cfa007745 Carpinus fangiana HOM05D000189 ORTHO05D000474 1.5e-22 110.9 217 36.9
Phvul.008G241200 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 2.0e-22 110.5 284 30.3
Potri.017G139500 Populus trichocarpa HOM05D000010 ORTHO05D000063 2.6e-22 110.2 296 30.7
CiPaw.04G049700 Carya illinoinensis HOM05D000010 ORTHO05D000063 3.3e-22 109.8 252 33.3
CiPaw.03G075700 Carya illinoinensis HOM05D000010 ORTHO05D000063 4.4e-22 109.4 293 29.7
FAN23G0511 Fragaria x ananassa HOM05D000010 ORTHO05D000063 4.4e-22 109.4 225 35.6
Glyma.02G240500 Glycine max HOM05D000010 ORTHO05D000063 5.7e-22 109.0 297 32.7
Phvul.006G087000 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 1.3e-21 107.8 292 32.9
Lj4C252T1 Lonicera japonica HOM05D000010 ORTHO05D000063 1.7e-21 107.5 201 38.8
Potri.004G081000 Populus trichocarpa HOM05D000010 ORTHO05D000063 1.7e-21 107.5 296 31.1
Dinv28245 Davidia involucrata HOM05D000010 ORTHO05D000063 2.2e-21 107.1 198 36.9
Lalb_Chr10g0104051 Lupinus albus HOM05D000010 ORTHO05D000063 6.3e-21 105.5 291 32.3
COL.COLO4_20040 Corchorus olitorius HOM05D000010 ORTHO05D000063 1.1e-20 104.8 276 31.5
Sabra04G0053800 Salix brachista HOM05D000010 ORTHO05D000063 1.1e-20 104.8 294 31.3
Thecc.04G059900 Theobroma cacao HOM05D000010 ORTHO05D000063 1.4e-20 104.4 274 31.4
DCAR_014143 Daucus carota HOM05D000010 ORTHO05D000063 3.1e-20 103.2 281 32.0
Sabra17G0117600 Salix brachista HOM05D000010 ORTHO05D000063 4.1e-20 102.8 298 30.2
vmacro18509 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 4.1e-20 102.8 277 33.2
Cc07_g12760 Coffea canephora HOM05D000010 ORTHO05D000063 5.3e-20 102.4 283 31.4
Manes.02G081200 Manihot esculenta HOM05D000010 ORTHO05D000063 6.9e-20 102.1 291 32.3
Lj6g0023621 Lotus japonicus HOM05D000010 ORTHO05D000063 1.5e-19 100.9 289 31.8
Lsat_1_v5_gn_3_67400 Lactuca sativa HOM05D000010 ORTHO05D000063 2.0e-19 100.5 271 31.0
Eucgr.F02910 Eucalyptus grandis HOM05D000010 ORTHO05D000063 5.9e-19 99.0 284 31.7
PGSC0003DMG400021474 Solanum tuberosum HOM05D000010 ORTHO05D000063 1.0e-18 98.2 272 32.0
Manes.01G123600 Manihot esculenta HOM05D000010 ORTHO05D000063 2.2e-18 97.1 261 31.4
LjContig00141g0019933 Lotus japonicus HOM05D000010 ORTHO05D000063 3.8e-18 96.3 296 32.1
Glyma.14G210000 Glycine max HOM05D000010 ORTHO05D000063 6.5e-18 95.5 288 31.6
Duzib138G1680 Durio zibethinus HOM05D000010 ORTHO05D000063 1.4e-17 94.4 288 30.6
Atru.chr1.2134 Acer truncatum HOM05D000010 ORTHO05D000063 1.9e-17 94.0 221 35.3
Solyc02g036430.2 Solanum lycopersicum HOM05D000010 ORTHO05D000063 1.9e-17 94.0 189 34.9
CANSAT78G2463 Cannabis sativa HOM05D000010 ORTHO05D000063 7.2e-17 92.0 223 32.3
CSS0038294 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 9.4e-17 91.7 221 32.1
CSS0049992 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 9.4e-17 91.7 221 32.1
TWI53G0309 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 9.4e-17 91.7 290 26.9
Haze_14328 Corylus avellana HOM05D000010 ORTHO05D000063 1.2e-16 91.3 202 31.7
Nitab4.5_0000483g0290 Nicotiana tabacum HOM05D006811 ORTHO05D008419 2.1e-16 90.5 279 31.5
HanXRQChr14g0443401 Helianthus annuus HOM05D000010 ORTHO05D000063 4.7e-16 89.4 186 32.3
CAN.G269.9 Capsicum annuum HOM05D000010 ORTHO05D000063 8.0e-16 88.6 221 29.9
Gohir.D11G176800 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.4e-15 87.8 282 31.2
Gorai.007G188800 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.8e-15 87.4 286 30.8
arahy.Tifrunner.gnm1.ann1.XKF840 Arachis hypogaea HOM05D000010 ORTHO05D000063 5.2e-15 85.9 230 31.7
Nitab4.5_0002648g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 5.2e-15 85.9 267 30.0
SalBow5G4598 Salvia bowleyana HOM05D000010 ORTHO05D000063 6.7e-15 85.5 274 28.5
SalBow5G5382 Salvia bowleyana HOM05D000010 ORTHO05D000063 6.7e-15 85.5 274 28.5
Medtr5g076850 Medicago truncatula HOM05D000010 ORTHO05D000063 1.5e-14 84.3 284 27.8
Ciclev10011293m.g Citrus clementina HOM05D000010 ORTHO05D000063 2.6e-14 83.6 228 32.9
Oeu032294.1 Olea europaea HOM05D000010 ORTHO05D000063 3.3e-14 83.2 247 32.0
Sopen02g025910 Solanum pennellii HOM05D006811 ORTHO05D008419 3.3e-14 83.2 244 26.6
CAN.G1681.12 Capsicum annuum HOM05D000010 ORTHO05D000063 7.4e-14 82.0 232 28.0
Nitab4.5_0013401g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 1.3e-13 81.3 282 30.5
TPR.G5302 Trifolium pratense HOM05D000010 ORTHO05D000063 1.3e-13 81.3 252 30.6
Gohir.A11G170000 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.7e-13 80.9 284 28.9
HanXRQChr16g0532331 Helianthus annuus HOM05D000010 ORTHO05D000063 3.7e-13 79.7 263 29.7
arahy.Tifrunner.gnm1.ann1.1GPE0T Arachis hypogaea HOM05D000010 ORTHO05D000063 4.8e-13 79.3 230 30.4
Gorai.004G048200 Gossypium raimondii HOM05D000010 ORTHO05D000063 4.8e-13 79.3 176 34.7
Gohir.A08G038500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 6.3e-13 79.0 153 35.9
Medtr3g064580 Medicago truncatula HOM05D000010 ORTHO05D000063 1.1e-12 78.2 295 26.1
EL10Ac4g08934 Beta vulgaris HOM05D000010 ORTHO05D000063 1.4e-12 77.8 236 25.8
Os03g0119966 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D000063 1.4e-12 77.8 256 30.9
SGA_v2.0_scaffold45G17109 Striga asiatica HOM05D000010 ORTHO05D000063 1.4e-12 77.8 149 34.9
Gohir.D08G048700 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.8e-12 77.4 156 36.5
DCAR_003409 Daucus carota HOM05D000010 ORTHO05D000063 5.3e-12 75.9 200 32.0
Lalb_Chr18g0053691 Lupinus albus HOM05D000010 ORTHO05D000063 5.3e-12 75.9 217 33.2
Nitab4.5_0002297g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 5.3e-12 75.9 263 29.3
Psat5g142520 Pisum sativum HOM05D000010 ORTHO05D000063 5.3e-12 75.9 226 32.3
MELO3C025099.2 Cucumis melo HOM05D000010 ORTHO05D000063 1.6e-11 74.3 154 35.1
Lsat_1_v5_gn_2_71740 Lactuca sativa HOM05D000010 ORTHO05D000063 2.6e-11 73.6 212 28.8
ClCG01G008530 Citrullus lanatus HOM05D000010 ORTHO05D000063 4.5e-11 72.8 133 37.6
arahy.Tifrunner.gnm1.ann1.JBNT97 Arachis hypogaea HOM05D000010 ORTHO05D000063 5.9e-11 72.4 272 26.5
PGR004G2042 Punica granatum HOM05D000010 ORTHO05D000063 7.7e-11 72.0 208 30.8
AUR62003400 Chenopodium quinoa HOM05D000010 ORTHO05D000063 1.3e-10 71.2 229 26.6
Peaxi162Scf00294g00625 Petunia axillaris HOM05D000010 ORTHO05D000063 1.3e-10 71.2 242 29.3
Cpa.g.sc178.32 Carica papaya HOM05D000010 ORTHO05D000063 1.7e-10 70.9 143 32.2
CsaV3_5G020440 Cucumis sativus L. HOM05D000010 ORTHO05D000063 1.7e-10 70.9 147 34.7
SGA_v2.0_scaffold115G32049 Striga asiatica HOM05D000010 ORTHO05D000063 1.7e-10 70.9 149 36.2
Sed0019689 Sechium edule HOM05D000010 ORTHO05D000063 3.8e-10 69.7 125 36.8
AUR62004778 Chenopodium quinoa HOM05D000010 ORTHO05D000063 5.0e-10 69.3 232 26.3
Nitab4.5_0000091g0390 Nicotiana tabacum HOM05D000010 ORTHO05D000063 5.0e-10 69.3 262 28.6
MSTRG.15637 Avicennia marina HOM05D000010 ORTHO05D000063 1.5e-09 67.8 205 29.8
Sc09g0004480 Simmondsia chinensis HOM05D000010 ORTHO05D000063 2.5e-09 67.0 232 26.3
Peaxi162Scf00521g00049 Petunia axillaris HOM05D000010 ORTHO05D000063 3.2e-09 66.6 208 27.9
Zm00001eb001460 Zea mays HOM05D000010 ORTHO05D000063 3.2e-09 66.6 159 32.1
Oeu012319.2 Olea europaea HOM05D000010 ORTHO05D000063 4.2e-09 66.2 224 26.8
HanXRQChr12g0365731 Helianthus annuus HOM05D000010 ORTHO05D000063 5.5e-09 65.9 221 30.3
Sp5g20960 Schrenkiella parvula HOM05D000010 ORTHO05D000063 1.2e-08 64.7 147 34.0
Hund06873 Selenicereus undatus HOM05D000010 ORTHO05D000063 1.2e-08 64.7 194 27.8
Migut.K00745 Erythranthe guttata HOM05D000010 ORTHO05D000063 1.6e-08 64.3 200 31.5
Lalb_Chr15g0085221 Lupinus albus HOM05D000010 ORTHO05D000063 1.6e-08 64.3 308 25.6
ECA238G0794 Erigeron canadensis HOM05D006811 ORTHO05D008419 2.1e-08 63.9 275 26.5
Sed0007727 Sechium edule HOM05D000010 ORTHO05D000063 2.1e-08 63.9 141 32.6
Sc20g0000800 Simmondsia chinensis HOM05D000010 ORTHO05D000063 2.1e-08 63.9 217 25.8
Carub.0002s1185 Capsella rubella HOM05D000010 ORTHO05D000063 2.7e-08 63.5 198 30.8
Zm00001eb403880 Zea mays HOM05D000010 ORTHO05D000063 4.7e-08 62.8 208 27.9
AL2G23290 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 6.1e-08 62.4 161 31.1
AT1G65910 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 1.8e-07 60.8 211 30.8
Ah.06g191640 Amaranthus hybridus HOM05D000010 ORTHO05D000063 8.8e-07 58.5 104 33.7
Thhalv10018275m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 8.8e-07 58.5 200 27.5
BcaC03g14726 Brassica carinata HOM05D000010 ORTHO05D000063 1.2e-06 58.2 141 31.9
C02p21710 Brassica napus HOM05D000010 ORTHO05D000063 1.2e-06 58.2 141 31.9
Peaxi162Scf00713g00018 Petunia axillaris HOM05D000010 ORTHO05D000063 1.2e-06 58.2 207 26.6
A02p13410 Brassica napus HOM05D000010 ORTHO05D000063 4.4e-06 56.2 139 30.9
Hund22199 Selenicereus undatus HOM05D000010 ORTHO05D000063 4.4e-06 56.2 188 27.1
Solyc02g081270.4 Solanum lycopersicum HOM05D000010 ORTHO05D000063 4.4e-06 56.2 149 29.5


User provided reference genes

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