Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 5.6e-43 177.2 88 100.0
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 1.3e-15 86.3 80 58.8
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 8.5e-15 83.6 89 52.8
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 1.6e-13 79.3 92 50.0
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 1.6e-13 79.3 91 56.0
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.6e-13 79.3 91 56.0
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 2.1e-13 79.0 69 60.9
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 4.6e-13 77.8 82 53.7
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 7.9e-13 77.0 69 60.9
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.4e-12 76.3 91 53.8
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 1.8e-12 75.9 93 50.5
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 3.0e-12 75.1 85 49.4
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 5.1e-12 74.3 80 51.2
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 5.1e-12 74.3 87 51.7
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 5.1e-12 74.3 88 48.9
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 8.8e-12 73.6 80 50.0
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 8.8e-12 73.6 85 47.1
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 1.1e-11 73.2 83 51.8
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 1.5e-11 72.8 87 47.1
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 2.0e-11 72.4 88 48.9
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 3.3e-11 71.6 57 66.7
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 3.3e-11 71.6 73 57.5
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 7.4e-11 70.5 87 47.1
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 9.7e-11 70.1 87 49.4
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 9.7e-11 70.1 86 48.8
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 1.3e-10 69.7 54 68.5
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 1.7e-10 69.3 80 46.2
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 1.7e-10 69.3 85 48.2
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 1.7e-10 69.3 87 44.8
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.2e-10 68.9 56 62.5
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 2.2e-10 68.9 54 68.5
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.8e-10 68.6 52 65.4
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 2.8e-10 68.6 86 46.5
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 3.7e-10 68.2 53 66.0
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 3.7e-10 68.2 58 60.3
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 3.7e-10 68.2 69 58.0
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 3.7e-10 68.2 53 62.3
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.8e-10 67.8 53 66.0
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 4.8e-10 67.8 93 48.4
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 6.3e-10 67.4 65 52.3
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 8.2e-10 67.0 54 61.1
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 8.2e-10 67.0 85 45.9
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.1e-09 66.6 52 61.5
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 1.1e-09 66.6 52 61.5
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 1.8e-09 65.9 53 62.3
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.8e-09 65.9 52 61.5
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 1.8e-09 65.9 51 66.7
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 2.4e-09 65.5 49 67.3
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.4e-09 65.5 70 55.7
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 5.3e-09 64.3 59 57.6
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 9.1e-09 63.5 49 63.3
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 1.2e-08 63.2 87 42.5
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 5.9e-08 60.8 61 50.8
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 7.7e-08 60.5 73 45.2
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 1.0e-07 60.1 85 42.4
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 1.7e-07 59.3 53 50.9
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 1.7e-07 59.3 59 54.2
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 2.9e-07 58.5 88 44.3
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 3.8e-07 58.2 46 63.0
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 3.8e-07 58.2 64 46.9
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 3.8e-07 58.2 71 49.3
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 6.5e-07 57.4 49 59.2
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 6.5e-07 57.4 47 63.8
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 1.4e-06 56.2 60 51.7
Phvul.009G134100 Phaseolus vulgaris HOM05D009255 ORTHO05D011239 2.5e-06 55.5 65 50.8
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 4.2e-06 54.7 46 60.9
TPR.G6325 Trifolium pratense HOM05D009255 ORTHO05D011239 5.5e-06 54.3 54 57.4
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 5.5e-06 54.3 51 56.9
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 9.4e-06 53.5 44 63.6
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 9.4e-06 53.5 47 61.7
Medtr3g089105 Medicago truncatula HOM05D009255 ORTHO05D011239 9.4e-06 53.5 66 47.0
VMungo1309G1730 Vigna mungo HOM05D009255 ORTHO05D011239 9.4e-06 53.5 65 50.8


User provided reference genes

Program Settings