Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 2106.6 1059 100.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1612.4 1056 78.9
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1575.5 1060 77.5
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1504.6 1053 72.5
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1503.4 1053 73.7
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1488.0 1054 71.9
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1482.6 1064 70.7
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1477.6 1075 71.7
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1475.7 1082 71.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1472.6 1053 71.4
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1470.3 1056 72.6
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1469.9 1061 71.7
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1469.9 1058 71.3
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1466.4 1054 71.5
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1465.3 1053 71.7
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1464.1 1057 70.6
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1463.4 1054 71.7
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1463.0 1054 71.7
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1455.7 1061 71.1
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1453.7 1055 70.6
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1453.0 1060 69.9
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1438.3 1059 70.3
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1438.3 1053 70.7
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1437.2 1080 68.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1436.8 1062 70.3
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1436.4 1053 70.4
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1432.5 1014 72.4
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1432.5 1053 69.8
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1431.8 1054 69.7
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1430.6 1058 69.5
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1080 68.5
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1429.1 1053 70.0
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1428.3 1091 67.9
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1428.3 1057 69.3
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 1073 68.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1424.5 1070 68.4
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1421.4 1059 69.2
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1419.8 1060 68.6
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1416.4 1053 69.5
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1414.1 1053 69.5
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1412.1 1055 68.2
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1411.7 1063 69.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1409.8 1063 68.9
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1409.4 1059 67.9
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 1060 68.6
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 1054 69.0
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1402.9 1057 68.2
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1059 67.7
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1401.3 1061 69.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1401.3 1059 67.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1400.6 1052 69.0
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1399.8 1055 68.0
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1399.0 975 73.5
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1397.9 927 77.2
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1395.9 1055 67.6
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1394.8 1055 67.6
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1394.4 1055 67.6
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1394.0 1055 67.5
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1393.6 1056 67.8
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1393.3 1055 67.6
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1390.2 1057 67.6
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1059 68.6
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1387.9 981 72.6
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1387.5 1057 67.4
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1387.5 1059 67.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1383.6 1058 67.8
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1382.5 1055 68.1
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1382.1 1055 68.0
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1381.3 1091 66.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1379.8 1055 67.8
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1379.0 1055 66.8
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1370.9 1032 68.8
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1364.4 1059 66.0
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1360.1 1127 64.0
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1355.1 1058 66.9
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1353.2 1059 67.0
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1347.4 1053 66.4
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1347.0 1072 66.5
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1346.6 1022 68.5
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1344.3 1065 65.5
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 1058 66.6
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1318.5 1153 62.0
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1315.4 1061 64.6
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1313.9 1060 64.6
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1305.4 1054 65.5
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1302.3 1034 66.3
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1296.6 1056 63.9
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1294.6 1057 63.2
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1286.6 1060 62.5
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1274.6 967 68.7
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1271.9 1054 63.7
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1270.8 1053 63.4
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1270.4 1053 63.8
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1259.6 1069 62.5
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1256.9 1060 62.8
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1251.5 1062 63.4
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1248.4 1049 62.2
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1246.1 1062 61.7
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1240.7 1070 61.4
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1240.3 1083 61.0
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1232.6 1057 61.6
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1230.3 1080 60.4
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1226.8 1060 60.7
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1221.8 994 64.0
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1220.7 860 73.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1206.0 1189 56.3
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1199.1 1054 61.5
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1198.7 1090 59.3
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1197.2 1228 55.0
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1196.0 1065 59.2
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1191.0 918 67.0
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1188.7 1053 60.6
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1181.4 1062 57.4
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1176.4 1054 60.0
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1150.6 939 63.9
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1149.8 1063 58.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1124.8 904 66.2
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1115.5 1037 60.0
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 0.0e+00 1091.3 953 62.3
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1077.0 861 65.3
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 3.0e-308 1062.0 817 68.4
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.2e-283 980.3 879 60.0
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.8e-269 932.6 781 64.1
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.6e-269 932.2 1084 49.4
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 7.8e-264 914.4 1085 48.4
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 5.2e-252 875.2 626 71.7
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-246 857.4 699 66.2
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.6e-243 846.3 1033 45.7
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 4.3e-238 828.9 1064 45.6
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 4.9e-234 815.5 652 66.0
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.6e-232 810.4 1073 44.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 9.6e-222 774.6 1272 40.6
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 5.8e-219 765.4 619 65.1
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.3e-212 742.3 958 43.1
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 6.1e-176 622.5 436 74.1
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.7e-173 614.4 404 77.0
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 5.7e-158 562.8 470 64.7
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.7e-157 560.1 558 53.6
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 6.8e-151 539.3 490 62.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-147 528.1 468 62.4
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 3.1e-135 487.3 533 50.5
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 3.3e-105 387.5 238 83.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 4.2e-100 370.5 256 74.2
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.5e-97 361.3 257 72.0
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 3.4e-94 350.9 249 67.9
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 4.8e-88 330.5 240 70.4
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 4.3e-81 307.4 819 29.9
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 6.5e-77 293.5 272 61.4
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.2e-69 268.5 206 63.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.4e-66 259.2 194 66.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 2.8e-56 224.9 171 62.0
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.8e-50 203.8 171 67.8
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.5e-49 200.3 441 35.6
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 4.8e-48 197.6 293 44.7
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.2e-46 193.0 148 75.7
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 6.1e-43 180.6 158 55.7
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.2e-42 177.6 90 84.4
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-41 176.0 150 61.3
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.1e-35 155.6 212 46.2
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 4.1e-31 141.4 114 64.0
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.6e-30 139.4 81 74.1
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 8.9e-26 123.6 132 54.5
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.0e-25 122.5 121 52.1
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 9.8e-25 120.2 96 61.5
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.4e-23 115.5 96 67.7
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 2.0e-22 112.5 81 72.8
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.4e-18 99.8 95 54.7
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.4e-18 99.8 95 54.7
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 8.9e-18 97.1 77 63.6
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 7.8e-14 84.0 98 54.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 6.6e-13 80.9 53 71.7
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-11 76.3 46 78.3
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 3.6e-11 75.1 75 48.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.6e-09 68.9 65 52.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 3.4e-09 68.6 77 51.9


User provided reference genes

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