Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 0.0e+00 1363.2 681 100.0
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.6e-310 1068.9 702 77.8
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.1e-238 827.8 558 75.1
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.1e-238 827.8 558 75.1
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.3e-237 825.9 549 74.1
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.9e-237 823.9 549 74.1
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.5e-236 823.2 556 74.1
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 8.0e-230 800.8 561 73.3
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 9.8e-228 793.9 556 72.5
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 4.1e-226 788.5 556 73.2
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.6e-225 786.6 560 73.0
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 8.6e-224 780.8 397 97.2
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.5e-223 780.0 560 71.4
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.5e-223 780.0 556 72.7
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 9.5e-223 777.3 556 72.3
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 1.2e-222 776.9 560 71.4
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-222 776.9 568 68.8
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.6e-222 776.5 558 72.8
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.1e-221 773.9 560 71.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 2.0e-220 769.6 557 71.1
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 5.8e-220 768.1 561 70.6
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 9.8e-220 767.3 556 70.9
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.4e-218 763.5 559 71.6
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.9e-218 763.1 557 71.5
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.7e-216 756.5 568 69.0
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.8e-214 749.2 558 69.2
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.1e-213 747.3 560 70.4
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.3e-213 746.1 560 70.2
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 5.2e-213 745.0 555 70.8
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 4.9e-211 738.4 563 68.4
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.4e-210 736.9 564 67.9
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.4e-210 736.9 558 69.0
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.2e-210 735.7 552 67.0
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 4.1e-210 735.3 559 67.8
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.2e-209 733.8 555 69.9
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 2.3e-208 729.6 562 68.1
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 8.6e-208 727.6 558 67.6
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.1e-207 727.2 559 66.9
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.1e-207 727.2 564 65.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.9e-207 726.5 557 67.9
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 5.6e-207 724.9 560 67.5
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.6e-206 723.4 560 68.8
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.1e-205 720.7 563 66.3
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.0e-205 718.8 560 66.8
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-204 717.2 555 67.2
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.2e-204 717.2 554 65.2
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.2e-204 717.2 549 65.2
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 2.0e-204 716.5 556 66.0
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.7e-203 713.4 551 64.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.9e-203 712.6 556 66.4
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.9e-203 712.6 559 66.5
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.8e-203 712.2 555 67.4
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 4.9e-203 711.8 559 66.0
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.9e-202 709.9 556 66.9
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 5.4e-202 708.4 555 66.5
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.4e-202 708.4 492 74.0
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 7.1e-202 708.0 556 65.6
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 4.6e-201 705.3 549 65.0
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.3e-200 703.7 549 65.2
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 3.9e-200 702.2 431 80.3
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 8.7e-200 701.0 543 67.2
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.5e-199 700.3 564 65.2
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.9e-199 699.9 564 64.2
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 7.3e-199 698.0 555 65.9
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-198 697.2 581 62.5
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 4.0e-197 692.2 568 63.2
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 5.3e-197 691.8 556 62.9
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 9.0e-197 691.0 553 67.6
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.6e-196 689.5 554 63.5
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.2e-195 686.4 574 63.1
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.9e-195 686.0 545 66.8
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 8.4e-195 684.5 576 63.4
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-194 682.9 577 62.7
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 2.4e-194 682.9 577 62.7
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 2.4e-194 682.9 577 62.7
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.2e-194 682.2 573 63.2
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 2.1e-193 679.9 569 63.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.1e-193 679.9 578 62.8
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-192 677.6 558 64.7
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.7e-192 676.8 466 71.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.7e-192 676.8 570 63.3
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.7e-192 676.8 573 62.8
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 8.7e-192 674.5 572 63.3
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 8.7e-192 674.5 550 63.8
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.1e-191 674.1 556 62.8
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.8e-190 669.5 560 63.0
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 6.2e-190 668.3 575 61.9
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 4.0e-189 665.6 573 61.8
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 9.9e-188 661.0 565 61.6
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 9.9e-188 661.0 557 63.0
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 4.9e-187 658.7 570 61.6
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.2e-185 654.1 566 60.2
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.6e-185 653.7 558 61.8
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-185 653.3 557 62.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.3e-184 650.6 559 62.3
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 5.1e-184 648.7 560 61.6
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 5.1e-184 648.7 554 61.7
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 6.7e-184 648.3 557 61.8
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 6.7e-184 648.3 573 61.4
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.1e-183 647.5 557 61.0
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 2.5e-183 646.4 562 62.8
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.3e-182 644.0 557 61.4
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 3.7e-182 642.5 562 62.5
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.4e-181 640.6 451 72.5
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.7e-179 633.6 472 67.8
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 8.4e-179 631.3 555 62.2
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-178 630.6 574 59.2
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 5.5e-178 628.6 554 59.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.6e-177 627.1 467 65.7
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.5e-175 620.5 559 61.0
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 3.3e-175 619.4 569 59.1
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.1e-174 616.7 569 60.6
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 4.1e-173 612.5 581 58.0
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-169 600.5 535 60.2
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-164 582.8 401 70.8
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 3.8e-163 579.3 552 55.8
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.7e-161 573.2 555 55.9
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 6.7e-160 568.5 384 71.4
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.8e-158 563.1 521 57.6
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 2.0e-156 557.0 337 78.6
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.1e-154 551.2 547 58.9
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.5e-154 550.1 564 56.6
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.0e-152 543.1 545 56.1
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.0e-141 505.4 301 80.1
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.0e-131 472.6 445 49.4
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 6.6e-123 445.7 481 55.7
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.1e-122 444.9 384 60.9
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.5e-106 391.3 380 47.9
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 4.3e-106 389.8 503 48.1
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-102 377.1 295 66.8
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.4e-101 374.8 323 67.2
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.1e-89 334.3 197 77.2
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.9e-86 323.2 390 47.4
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.9e-85 321.2 357 49.3
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.6e-84 316.6 210 69.0
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.6e-74 283.1 155 85.2
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 4.5e-55 220.3 199 57.3
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-51 208.8 213 58.7
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.8e-49 200.3 273 47.6
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 8.5e-46 189.5 291 43.6
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.4e-45 188.7 176 64.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-34 152.5 91 79.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 9.7e-34 149.4 91 78.0
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 1.7e-30 138.7 470 25.7
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 4.8e-25 120.6 79 73.4
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.2e-23 115.9 115 53.0
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 3.5e-23 114.4 70 77.1
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-22 112.8 70 75.7
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-22 112.5 70 75.7
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.4e-19 102.4 152 42.8
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.2e-17 95.1 180 31.1
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 3.5e-15 87.8 58 72.4
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 5.9e-15 87.0 73 58.9
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 4.2e-13 80.9 117 46.2
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.8e-11 73.6 87 48.3
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.1e-08 64.7 50 64.0
Nitab4.5_0003733g0050 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.7e-06 58.9 42 69.0


User provided reference genes

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