Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 1.4e-143 513.1 282 100.0
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 4.9e-64 248.8 262 55.0
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.9e-63 246.9 285 52.6
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 1.2e-62 244.2 270 52.6
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 2.0e-62 243.4 267 54.3
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 3.5e-62 242.7 261 54.0
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 1.3e-61 240.7 273 50.5
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 1.5e-60 237.3 275 51.3
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 1.2e-59 234.2 274 51.1
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 5.2e-58 228.8 260 50.0
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 6.8e-58 228.4 271 50.6
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 6.8e-58 228.4 271 49.1
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 1.5e-57 227.3 260 51.5
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.0e-57 226.9 276 49.3
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 2.6e-57 226.5 269 48.7
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 4.4e-57 225.7 279 49.8
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 5.8e-57 225.3 273 48.7
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 2.9e-56 223.0 295 46.4
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 3.7e-56 222.6 282 47.2
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 4.9e-56 222.2 260 50.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 6.4e-56 221.9 269 48.3
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 8.3e-56 221.5 266 48.1
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 8.3e-56 221.5 261 56.3
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 1.9e-55 220.3 275 50.2
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 2.4e-55 219.9 272 48.2
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 4.1e-55 219.2 280 48.2
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 5.4e-55 218.8 279 48.4
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 7.1e-55 218.4 272 47.8
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 7.1e-55 218.4 273 47.3
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.2e-54 217.6 266 50.8
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.2e-54 217.6 290 46.6
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 1.6e-54 217.2 274 48.2
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 6.0e-54 215.3 282 47.5
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 6.0e-54 215.3 286 46.2
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 5.1e-53 212.2 291 44.3
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 6.6e-53 211.8 266 48.5
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 8.6e-53 211.5 275 47.6
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 1.1e-52 211.1 291 47.1
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 1.5e-52 210.7 263 46.8
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 1.9e-52 210.3 269 47.6
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.9e-52 210.3 272 47.4
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 1.9e-52 210.3 269 47.2
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 4.3e-52 209.1 271 45.4
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 5.6e-52 208.8 300 45.3
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 7.3e-52 208.4 275 45.8
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 9.5e-52 208.0 269 45.4
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.1e-51 206.8 296 44.9
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.1e-51 206.8 271 45.0
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 2.1e-51 206.8 294 45.6
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 2.8e-51 206.5 284 45.4
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 2.8e-51 206.5 275 47.3
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 3.6e-51 206.1 270 47.8
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 3.6e-51 206.1 271 45.0
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 4.7e-51 205.7 283 45.9
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 6.2e-51 205.3 279 45.9
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 8.1e-51 204.9 255 49.8
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 1.1e-50 204.5 269 45.7
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 5.2e-50 202.2 271 45.0
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 6.8e-50 201.8 241 49.4
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 1.2e-49 201.1 276 45.3
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.5e-49 200.7 266 44.0
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 2.0e-49 200.3 289 42.6
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.0e-49 200.3 285 44.2
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 2.6e-49 199.9 259 46.3
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 5.8e-49 198.7 255 46.3
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 5.8e-49 198.7 261 45.6
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 9.9e-49 198.0 261 45.6
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.2e-48 196.8 253 45.8
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 3.7e-48 196.1 261 44.8
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.7e-48 196.1 290 46.2
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 3.7e-48 196.1 282 44.3
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 2.4e-47 193.4 265 44.5
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 2.1e-46 190.3 304 41.1
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 3.9e-45 186.0 230 46.5
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 8.6e-45 184.9 211 47.9
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 1.9e-44 183.7 272 41.5
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.9e-44 183.7 231 51.1
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 3.3e-44 183.0 265 41.9
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 9.6e-44 181.4 306 39.9
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 4.7e-43 179.1 234 45.7
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 6.2e-43 178.7 219 47.0
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 8.1e-43 178.3 259 44.8
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 8.1e-43 178.3 251 49.0
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.4e-42 177.6 255 44.3
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 1.4e-42 177.6 311 38.6
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.8e-42 177.2 219 50.7
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 2.4e-42 176.8 288 42.4
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.4e-42 176.8 254 42.5
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 4.0e-42 176.0 231 42.0
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 4.0e-42 176.0 291 39.2
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 5.2e-42 175.6 221 44.8
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 5.2e-42 175.6 274 41.6
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 6.8e-42 175.3 222 44.6
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 8.9e-42 174.9 243 42.4
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 2.0e-41 173.7 219 49.8
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.6e-41 173.3 217 43.8
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 3.4e-41 172.9 222 44.1
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 3.4e-41 172.9 219 45.7
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 4.4e-41 172.6 265 43.0
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 4.4e-41 172.6 219 49.3
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 4.4e-41 172.6 256 43.0
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 7.6e-41 171.8 257 41.2
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 7.6e-41 171.8 259 43.2
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 7.6e-41 171.8 278 39.2
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 1.3e-40 171.0 238 43.3
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 1.3e-40 171.0 221 51.1
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.2e-40 170.2 210 45.7
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 2.2e-40 170.2 225 49.3
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 2.9e-40 169.9 251 42.6
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 3.8e-40 169.5 275 40.4
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 4.9e-40 169.1 265 42.3
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 4.9e-40 169.1 225 42.2
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.4e-39 167.5 244 43.9
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.4e-39 166.8 266 42.9
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 5.4e-39 165.6 276 40.9
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 4.6e-38 162.5 288 38.9
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 3.9e-37 159.5 264 40.5
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.9e-36 157.1 110 64.5
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 3.3e-36 156.4 254 41.3
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 1.6e-35 154.1 106 66.0
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 2.1e-35 153.7 263 39.9
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 8.1e-35 151.8 220 41.8
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 9.0e-34 148.3 102 65.7
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 9.0e-34 148.3 271 39.9
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 9.9e-33 144.8 259 39.0
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 4.9e-32 142.5 101 63.4
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.7e-30 136.7 112 58.9
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 6.0e-30 135.6 109 58.7
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.9e-29 132.9 251 37.5
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 5.1e-29 132.5 105 58.1
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 5.1e-29 132.5 109 57.8
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.9e-28 130.6 240 37.5
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 4.3e-28 129.4 109 56.0
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 4.3e-28 129.4 109 56.0
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 8.1e-27 125.2 263 36.9
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 2.4e-26 123.6 269 36.1
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-25 121.3 116 53.4
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-25 120.9 271 34.7
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 2.6e-25 120.2 240 36.7
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 4.5e-25 119.4 288 32.3
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 2.2e-24 117.1 100 56.0
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 2.9e-24 116.7 93 59.1
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 4.9e-24 115.9 86 60.5
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.1e-23 114.8 94 57.4
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 1.1e-23 114.8 97 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.0e-22 109.0 283 25.8
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 5.1e-21 105.9 295 31.9
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-20 104.8 86 57.0
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 4.8e-19 99.4 69 65.2
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 5.5e-15 85.9 93 49.5
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 2.3e-13 80.5 195 34.4
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 6.7e-13 79.0 117 42.7
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 1.9e-12 77.4 336 27.1
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 4.1e-10 69.7 74 54.1
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.4e-07 61.2 86 43.0


User provided reference genes

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