Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.2e-170 603.2 321 100.0
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 2.1e-116 422.9 323 71.2
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.3e-113 413.7 266 78.9
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 3.8e-113 412.1 258 80.2
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 4.9e-113 411.8 280 76.4
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.9e-113 411.8 314 70.7
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 2.5e-112 409.5 326 67.5
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.5e-112 409.5 277 76.2
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 4.2e-112 408.7 311 71.4
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 2.7e-111 406.0 322 69.3
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.0e-110 404.1 302 70.2
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 1.3e-110 403.7 272 77.6
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 1.8e-110 403.3 325 67.1
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.8e-110 403.3 282 74.1
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 2.3e-110 402.9 302 70.2
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 3.0e-110 402.5 314 69.1
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.9e-110 402.1 253 79.4
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 3.9e-110 402.1 294 71.1
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.5e-109 400.2 326 65.6
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 2.5e-109 399.4 312 68.3
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.5e-109 399.4 275 75.3
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 2.5e-109 399.4 328 68.0
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.3e-109 399.1 299 71.2
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.3e-109 399.1 319 67.7
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.3e-109 399.1 274 75.2
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 4.3e-109 398.7 277 74.4
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 4.3e-109 398.7 279 73.8
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.7e-109 398.3 314 68.8
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 5.7e-109 398.3 315 67.0
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.7e-109 397.5 312 68.6
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.6e-108 396.7 281 73.0
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 2.2e-108 396.4 322 67.1
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 2.8e-108 396.0 257 77.8
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 4.8e-108 395.2 283 70.0
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 4.8e-108 395.2 253 79.4
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.3e-108 394.8 312 67.9
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 6.3e-108 394.8 294 72.1
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 6.3e-108 394.8 319 68.0
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 8.2e-108 394.4 318 68.6
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 8.2e-108 394.4 316 66.8
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 1.1e-107 394.0 325 67.1
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 1.4e-107 393.7 326 67.5
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 3.1e-107 392.5 325 66.5
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 3.1e-107 392.5 308 67.2
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 5.3e-107 391.7 259 76.8
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 5.3e-107 391.7 321 66.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.0e-107 391.0 302 68.5
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.0e-106 389.8 323 67.2
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 3.4e-106 389.0 315 66.3
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 3.4e-106 389.0 317 63.7
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 4.5e-106 388.7 276 72.1
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 4.5e-106 388.7 320 67.2
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 5.9e-106 388.3 323 63.5
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 5.9e-106 388.3 262 74.0
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 5.9e-106 388.3 255 76.1
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.3e-105 387.1 299 66.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 5.0e-105 385.2 305 67.9
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 8.5e-105 384.4 256 77.0
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 1.9e-104 383.3 316 65.2
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.9e-104 383.3 337 63.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 3.2e-104 382.5 267 73.4
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 7.2e-104 381.3 268 73.1
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 7.2e-104 381.3 340 61.8
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.2e-103 380.6 259 73.7
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 2.1e-103 379.8 288 68.8
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 6.1e-103 378.3 273 72.2
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 7.9e-103 377.9 256 74.2
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 2.3e-102 376.3 256 74.2
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 2.3e-102 376.3 256 74.2
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 2.3e-102 376.3 317 63.1
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 5.1e-102 375.2 305 63.6
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 6.7e-102 374.8 256 73.4
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 6.7e-102 374.8 256 73.8
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 1.5e-101 373.6 256 73.0
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 2.0e-101 373.2 255 73.7
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 2.0e-101 373.2 256 74.2
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.5e-101 372.9 370 60.0
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 3.3e-101 372.5 256 73.4
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 4.3e-101 372.1 256 72.7
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 7.4e-101 371.3 256 73.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 2.8e-100 369.4 256 72.3
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 6.3e-100 368.2 317 63.7
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 6.3e-100 368.2 303 61.4
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 1.1e-99 367.5 256 72.3
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.4e-99 367.1 273 68.1
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 5.3e-99 365.2 384 57.0
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 6.9e-99 364.8 258 72.9
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 2.6e-98 362.8 266 69.9
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.6e-98 362.8 275 70.9
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 4.5e-98 362.1 313 63.3
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.7e-97 360.1 315 61.0
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 1.9e-96 356.7 278 68.7
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 7.2e-96 354.8 250 74.8
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 7.2e-96 354.8 379 53.8
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.2e-95 354.0 230 77.0
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 7.4e-93 344.7 225 76.9
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 7.4e-93 344.7 225 76.9
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 7.4e-93 344.7 258 66.3
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 3.1e-91 339.3 230 73.0
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 9.4e-88 327.8 242 71.9
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.2e-82 310.8 403 46.2
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.3e-81 307.4 249 67.1
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 5.0e-81 305.4 254 60.6
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 4.2e-80 302.4 216 72.2
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 9.4e-80 301.2 248 61.7
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 2.3e-78 296.6 243 65.8
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.0e-78 296.2 247 66.8
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.6e-77 293.1 211 71.6
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 2.6e-77 293.1 252 59.9
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 3.1e-75 286.2 258 62.0
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 2.0e-74 283.5 242 60.3
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 7.7e-74 281.6 182 79.7
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 3.6e-71 272.7 247 54.7
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 3.4e-69 266.2 302 51.0
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 9.8e-69 264.6 252 57.1
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.6e-61 240.0 181 71.3
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 3.9e-57 226.1 171 70.2
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.9e-56 223.8 233 56.2
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 4.7e-55 219.2 270 48.5
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 6.1e-55 218.8 248 51.2
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.8e-53 212.2 281 47.3
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 9.8e-53 211.5 201 58.2
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 7.0e-51 205.3 215 58.1
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 1.8e-46 190.7 280 43.6
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.4e-27 127.9 97 70.1
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 4.2e-19 99.8 129 51.2
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 5.4e-19 99.4 120 50.0
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 3.0e-17 93.6 67 67.2
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 5.3e-14 82.8 64 65.6
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 1.5e-13 81.3 52 75.0
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 5.8e-13 79.3 63 58.7
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 3.9e-09 66.6 48 56.2
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 1.9e-08 64.3 48 54.2
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 5.6e-08 62.8 48 54.2
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 6.2e-07 59.3 87 46.0
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 1.4e-06 58.2 52 55.8
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 4.0e-06 56.6 208 29.8


User provided reference genes

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