Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.9e-145 519.2 282 100.0
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.7e-104 383.3 279 68.8
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.5e-102 376.7 282 65.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.5e-102 375.6 279 65.2
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.7e-102 374.4 282 65.2
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 8.5e-101 370.9 282 64.5
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.1e-100 370.5 279 65.9
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.9e-100 369.8 279 64.9
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 7.2e-100 367.9 274 67.5
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 9.4e-100 367.5 279 64.5
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 2.1e-99 366.3 274 67.2
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 8.0e-99 364.4 279 65.9
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 1.0e-98 364.0 279 69.2
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.0e-98 364.0 274 66.8
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.3e-98 362.8 279 63.4
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.0e-97 359.8 282 64.2
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 4.4e-97 358.6 279 64.9
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 5.7e-97 358.2 282 65.2
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 7.4e-97 357.8 279 69.9
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 7.4e-97 357.8 282 64.9
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 7.4e-97 357.8 279 63.4
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 9.7e-97 357.5 279 64.5
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 1.3e-96 357.1 279 64.5
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.3e-96 357.1 279 71.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.8e-96 355.1 279 62.0
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 4.8e-96 355.1 300 60.3
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 2.4e-95 352.8 276 61.2
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 3.1e-95 352.4 282 62.8
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 5.3e-95 351.7 279 62.7
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 7.0e-95 351.3 279 62.7
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.6e-94 350.1 278 62.6
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 1.6e-94 350.1 279 62.0
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 2.0e-94 349.7 279 63.4
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.6e-94 349.4 274 65.3
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 2.6e-94 349.4 279 62.4
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 4.5e-94 348.6 280 62.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 5.9e-94 348.2 281 63.0
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 5.9e-94 348.2 269 63.9
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.0e-93 347.4 279 62.0
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.7e-93 346.7 279 62.0
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 3.8e-93 345.5 280 62.1
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 6.5e-93 344.7 282 66.3
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 6.5e-93 344.7 280 62.5
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.9e-92 343.2 276 62.7
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.9e-92 343.2 279 61.3
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.5e-92 342.8 279 62.4
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 4.2e-92 342.0 278 61.2
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 2.1e-91 339.7 279 61.6
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 3.6e-91 339.0 279 60.9
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.6e-91 339.0 279 59.9
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 4.7e-91 338.6 274 60.9
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 8.0e-91 337.8 279 61.6
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 2.3e-90 336.3 278 62.6
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 3.0e-90 335.9 279 59.5
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 3.0e-90 335.9 279 59.5
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 5.2e-90 335.1 279 60.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.2e-89 334.0 281 60.1
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.2e-89 334.0 279 61.6
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.2e-89 334.0 279 61.6
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 2.0e-89 333.2 281 61.2
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.4e-89 332.0 279 60.2
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 4.4e-89 332.0 277 59.6
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.7e-88 330.1 272 61.8
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.2e-88 329.7 279 59.5
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 4.8e-88 328.6 278 58.3
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 4.8e-88 328.6 279 59.1
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 6.3e-88 328.2 282 61.7
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 6.3e-88 328.2 275 60.0
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 1.4e-87 327.0 279 60.6
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 3.1e-87 325.9 276 61.6
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 4.1e-87 325.5 279 60.2
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 5.4e-87 325.1 279 59.9
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.2e-86 323.9 279 58.4
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.2e-86 323.9 279 58.4
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.2e-86 323.9 280 63.6
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.0e-86 323.2 278 60.8
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.5e-86 322.4 279 58.1
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.3e-85 320.5 276 60.5
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.9e-85 319.3 279 59.1
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.9e-84 316.6 279 56.6
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.9e-84 316.6 279 57.3
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 4.2e-84 315.5 283 62.9
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.2e-84 314.7 294 55.4
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.0e-82 310.8 280 56.1
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.6e-81 306.2 276 62.7
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 2.6e-81 306.2 279 56.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 5.7e-81 305.1 276 62.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 9.8e-81 304.3 276 62.7
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 1.3e-80 303.9 276 62.3
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.3e-80 303.9 276 62.7
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.7e-80 303.5 276 62.0
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.7e-80 303.5 260 59.6
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 3.7e-80 302.4 276 62.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 3.7e-80 302.4 276 62.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 4.9e-80 302.0 276 62.0
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 6.3e-80 301.6 275 62.5
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 6.3e-80 301.6 276 62.0
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.1e-79 300.8 276 61.6
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.1e-79 300.8 276 61.6
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 3.1e-79 299.3 277 61.4
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 3.1e-79 299.3 276 61.6
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 5.4e-79 298.5 276 61.6
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 7.0e-79 298.1 276 61.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.3e-77 293.9 276 60.9
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.7e-77 293.5 236 63.6
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.5e-76 290.4 279 55.6
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 3.3e-76 289.3 209 69.9
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 4.2e-76 288.9 279 54.8
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.6e-75 287.0 224 65.6
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 3.4e-73 279.3 249 57.8
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.2e-70 270.8 209 66.5
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.6e-70 270.4 270 51.9
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 2.0e-70 270.0 245 58.0
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.0e-69 267.7 213 65.3
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 2.3e-69 266.5 209 71.3
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 5.6e-68 261.9 279 50.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 6.2e-67 258.5 199 65.8
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 8.9e-66 254.6 277 51.3
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.3e-64 250.8 278 46.8
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.7e-64 250.4 221 59.3
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 9.5e-60 234.6 278 43.9
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.4e-55 220.7 198 56.6
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 8.9e-42 174.9 138 60.1
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.2e-40 170.2 132 57.6
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.1e-37 159.1 109 66.1
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 8.1e-35 151.8 278 36.7
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 6.9e-34 148.7 195 49.2
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 3.2e-31 139.8 102 61.8
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 5.4e-31 139.0 105 69.5
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.9e-20 104.0 84 52.4
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 3.5e-06 56.6 271 26.9


User provided reference genes

Program Settings