Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.3e-104 383.3 215 100.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.2e-50 201.8 191 64.4
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.7e-48 196.8 192 62.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.7e-48 195.7 191 64.4
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.4e-47 193.7 184 64.7
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 4.1e-47 192.2 182 64.8
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.0e-46 189.9 184 63.6
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 2.1e-43 179.9 230 52.6
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 3.1e-42 176.0 180 60.0
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 2.0e-41 173.3 221 56.1
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 4.4e-41 172.2 195 59.0
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.8e-41 171.8 175 58.9
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 7.5e-41 171.4 184 62.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 7.5e-41 171.4 197 55.8
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 9.8e-41 171.0 204 56.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.3e-40 170.6 196 56.6
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 2.9e-40 169.5 179 60.3
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 2.9e-40 169.5 191 57.6
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 8.3e-40 167.9 198 55.6
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 3.2e-39 166.0 189 59.3
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.1e-39 164.9 196 54.6
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.2e-38 164.1 185 57.8
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-38 164.1 193 54.9
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 1.6e-38 163.7 220 52.3
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.6e-38 163.7 228 53.1
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.1e-38 163.3 194 54.6
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 2.7e-38 162.9 199 52.8
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 2.7e-38 162.9 198 54.0
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 7.8e-38 161.4 221 52.9
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.3e-37 160.6 184 58.7
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 1.7e-37 160.2 199 53.3
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 2.3e-37 159.8 192 54.7
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.0e-37 159.5 180 55.6
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.1e-37 158.7 186 55.4
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.1e-36 157.5 198 54.0
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.9e-36 156.8 211 52.1
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.9e-36 156.8 195 56.9
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.9e-36 156.8 151 61.6
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 2.5e-36 156.4 197 53.3
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.5e-36 156.4 186 54.8
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 2.5e-36 156.4 196 54.6
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 4.7e-35 152.1 190 53.2
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.1e-34 151.0 190 55.3
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.4e-34 150.6 186 53.8
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.8e-34 150.2 176 55.1
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.3e-34 149.8 186 53.2
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.3e-34 149.8 186 53.2
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.1e-34 149.4 190 52.1
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.1e-34 149.4 190 52.1
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 3.1e-34 149.4 192 53.6
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 8.9e-34 147.9 223 47.5
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-33 147.1 202 52.5
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.0e-33 146.7 200 52.0
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.6e-33 146.4 223 47.5
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 9.9e-33 144.4 202 51.5
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 9.9e-33 144.4 128 65.6
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.3e-32 144.1 187 52.4
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.2e-32 143.3 175 52.0
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 6.4e-32 141.7 192 51.0
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 8.4e-32 141.4 190 50.5
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.1e-31 141.0 186 52.2
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.1e-31 141.0 186 52.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.9e-31 140.2 196 48.5
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.9e-31 140.2 181 51.4
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 4.1e-31 139.0 177 52.5
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 5.4e-31 138.7 185 49.7
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.4e-31 138.7 182 52.2
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 5.4e-31 138.7 188 53.7
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 7.1e-31 138.3 195 51.8
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 9.2e-31 137.9 242 44.6
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 9.2e-31 137.9 190 51.6
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.6e-30 137.1 194 50.5
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 3.5e-30 136.0 178 51.7
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 7.8e-30 134.8 158 54.4
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.7e-29 133.7 261 44.1
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.7e-29 133.7 261 44.1
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.3e-29 133.3 125 65.6
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.3e-29 133.3 125 65.6
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.3e-29 133.3 187 54.5
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.1e-28 131.0 202 46.0
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.9e-28 130.2 278 38.1
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.9e-28 130.2 183 49.2
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.3e-28 129.4 187 45.5
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 4.3e-28 129.0 231 43.3
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 4.3e-28 129.0 188 51.6
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 4.3e-28 129.0 126 61.9
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 9.6e-28 127.9 192 49.5
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.6e-27 127.1 183 48.1
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.8e-27 126.3 191 47.1
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 3.6e-27 125.9 191 45.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 4.7e-27 125.6 229 42.4
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 6.2e-27 125.2 136 57.4
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 6.2e-27 125.2 201 46.3
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 8.1e-27 124.8 230 43.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 8.1e-27 124.8 182 47.8
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.8e-26 123.6 174 51.7
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 4.0e-26 122.5 190 44.2
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.2e-25 120.9 125 59.2
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.2e-25 120.9 125 60.0
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.5e-25 120.6 185 51.9
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 2.0e-25 120.2 201 44.3
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 4.4e-25 119.0 246 40.7
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 7.6e-25 118.2 199 45.7
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 3.8e-24 115.9 125 57.6
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 1.4e-23 114.0 201 46.3
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 3.2e-23 112.8 125 58.4
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 5.4e-23 112.1 250 37.6
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 1.6e-22 110.5 125 56.8
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 6.0e-22 108.6 121 59.5
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 2.3e-21 106.7 271 35.8
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 5.1e-21 105.5 121 59.5
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 8.7e-21 104.8 132 50.8
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.5e-20 104.0 103 60.2
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.9e-20 103.6 177 42.9
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 2.5e-20 103.2 249 37.3
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 5.6e-20 102.1 183 40.4
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.3e-19 100.9 178 42.7
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.6e-19 100.5 121 58.7
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.1e-19 100.1 180 43.3
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.6e-19 99.4 182 41.8
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.0e-18 95.9 129 49.6
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.2e-17 94.4 138 50.0
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.0e-17 93.6 172 44.8
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.8e-16 89.4 181 40.3
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 4.9e-16 89.0 115 51.3
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 2.7e-14 83.2 149 44.3
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.3e-13 80.9 131 42.7
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 5.1e-13 79.0 131 42.0
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.1e-12 77.8 131 42.0
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 3.3e-12 76.3 130 41.5
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.3e-12 76.3 275 31.6
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.0e-10 69.3 106 44.3
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.0e-10 69.3 106 44.3
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.0e-10 69.3 106 44.3
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 9.0e-10 68.2 131 44.3
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 5.8e-09 65.5 57 61.4
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.4e-08 61.6 69 53.6
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.1e-07 61.2 64 56.2
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.1e-07 61.2 64 56.2
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.4e-07 60.8 78 56.4
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 1.9e-07 60.5 139 36.0


User provided reference genes

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