Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.4e-53 211.1 111 100.0
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.2e-35 151.8 82 96.3
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.0e-33 146.7 91 85.7
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 4.0e-30 134.8 95 77.9
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 7.6e-29 130.6 95 74.7
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 4.2e-27 124.8 101 70.3
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 9.3e-27 123.6 93 72.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 3.5e-26 121.7 102 67.6
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.0e-26 120.9 108 63.0
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 7.9e-26 120.6 93 69.9
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 3.3e-24 115.2 96 62.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 3.3e-24 115.2 96 62.5
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.6e-23 112.8 101 63.4
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.6e-23 112.8 101 64.4
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.8e-23 112.1 102 60.8
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 2.8e-23 112.1 101 62.4
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 2.8e-23 112.1 95 63.2
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.8e-23 112.1 102 62.7
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.2e-23 110.9 94 61.7
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.2e-23 110.9 95 62.1
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 6.2e-23 110.9 103 56.3
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.4e-22 109.8 111 59.5
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.4e-22 109.8 94 61.7
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.4e-22 109.0 94 60.6
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 4.0e-22 108.2 100 56.0
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 6.9e-22 107.5 106 54.7
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.9e-22 107.5 97 57.7
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 9.0e-22 107.1 97 58.8
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.5e-21 106.3 103 59.2
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.0e-21 105.9 106 53.8
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 2.0e-21 105.9 95 58.9
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.0e-21 105.9 94 62.8
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.6e-21 105.5 97 56.7
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 3.4e-21 105.1 97 54.6
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.4e-21 105.1 97 55.7
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 3.4e-21 105.1 95 58.9
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.5e-21 104.8 111 55.9
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 4.5e-21 104.8 103 57.3
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 5.8e-21 104.4 103 59.2
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 7.6e-21 104.0 97 55.7
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 7.6e-21 104.0 103 58.3
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 7.6e-21 104.0 103 58.3
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 7.6e-21 104.0 103 52.4
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 7.6e-21 104.0 108 54.6
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.0e-20 103.6 85 64.7
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.3e-20 103.2 105 53.3
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 1.3e-20 103.2 111 55.0
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.9e-20 102.1 97 54.6
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 2.9e-20 102.1 95 58.9
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 3.8e-20 101.7 95 57.9
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.8e-20 101.7 97 53.6
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 4.9e-20 101.3 111 55.0
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 4.9e-20 101.3 111 54.1
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 8.4e-20 100.5 96 59.4
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.1e-19 100.1 97 52.6
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.1e-19 100.1 96 56.2
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.4e-19 99.8 95 56.8
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.9e-19 99.4 105 54.3
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 2.5e-19 99.0 95 56.8
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.2e-19 98.6 93 60.2
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 3.2e-19 98.6 103 53.4
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 4.2e-19 98.2 85 61.2
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 4.2e-19 98.2 107 54.2
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 5.5e-19 97.8 97 55.7
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 5.5e-19 97.8 92 59.8
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.5e-19 97.8 82 64.6
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 5.5e-19 97.8 100 55.0
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.5e-19 97.8 92 57.6
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 7.1e-19 97.4 95 55.8
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 7.1e-19 97.4 97 52.6
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.2e-18 96.7 101 57.4
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.2e-18 96.7 103 50.5
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 2.7e-18 95.5 102 48.0
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 2.7e-18 95.5 95 55.8
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.7e-18 95.5 101 56.4
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 3.5e-18 95.1 95 55.8
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 4.6e-18 94.7 97 52.6
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 4.6e-18 94.7 97 52.6
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 4.6e-18 94.7 95 53.7
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 4.6e-18 94.7 86 62.8
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 6.0e-18 94.4 81 63.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 6.0e-18 94.4 95 52.6
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 7.9e-18 94.0 96 54.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 7.9e-18 94.0 85 57.6
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.0e-17 93.6 85 60.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.3e-17 93.2 81 59.3
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.3e-17 92.4 85 62.4
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 3.0e-17 92.0 101 51.5
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.9e-17 91.7 96 52.1
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 5.1e-17 91.3 95 52.6
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 5.1e-17 91.3 102 52.0
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 5.1e-17 91.3 95 51.6
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 6.7e-17 90.9 97 48.5
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 8.7e-17 90.5 113 53.1
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 8.7e-17 90.5 92 56.5
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 8.7e-17 90.5 61 68.9
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.1e-16 90.1 75 62.7
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.1e-16 90.1 108 49.1
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.5e-16 89.7 91 57.1
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 1.9e-16 89.4 73 61.6
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 1.9e-16 89.4 100 49.0
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.9e-16 89.4 94 54.3
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.9e-16 89.4 95 55.8
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.3e-16 88.6 105 51.4
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.3e-16 88.6 77 58.4
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 3.3e-16 88.6 108 48.1
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.3e-16 88.2 96 49.0
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 4.3e-16 88.2 100 52.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 5.7e-16 87.8 95 52.6
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.3e-15 86.7 95 51.6
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.3e-15 86.7 109 51.4
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 2.2e-15 85.9 77 55.8
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 2.2e-15 85.9 69 60.9
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.7e-15 85.1 109 48.6
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 4.8e-15 84.7 81 56.8
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 6.3e-15 84.3 103 51.5
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 6.3e-15 84.3 108 45.4
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 8.2e-15 84.0 100 51.0
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.2e-15 84.0 95 50.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 8.2e-15 84.0 97 53.6
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.8e-14 82.8 106 48.1
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.4e-14 82.4 69 58.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.1e-14 82.0 65 66.2
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.1e-14 82.0 104 47.1
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 6.9e-14 80.9 69 59.4
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 6.9e-14 80.9 105 44.8
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 1.5e-13 79.7 100 49.0
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.0e-13 79.3 101 47.5
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 2.0e-13 79.3 107 46.7
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 2.0e-13 79.3 94 45.7
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 3.4e-13 78.6 101 48.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 4.5e-13 78.2 57 70.2
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 7.6e-13 77.4 73 56.2
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.3e-12 76.6 74 59.5
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.2e-12 75.9 88 47.7
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.2e-12 75.9 69 55.1
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 6.5e-12 74.3 95 44.2
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 9.4e-11 70.5 74 59.5
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 2.7e-10 68.9 74 54.1
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 7.9e-10 67.4 96 43.8
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 3.0e-09 65.5 94 43.6
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 3.9e-09 65.1 101 44.6
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 5.1e-09 64.7 95 44.2
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 5.1e-09 64.7 95 44.2
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.7e-09 64.3 103 41.7
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 6.7e-09 64.3 52 61.5
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 8.8e-09 63.9 36 86.1
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.5e-08 63.2 102 39.2
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.5e-08 63.2 102 39.2
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 1.9e-08 62.8 98 44.9
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 2.5e-08 62.4 95 43.2
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 3.3e-08 62.0 101 42.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.7e-08 61.2 63 52.4
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 2.2e-07 59.3 95 43.2
SalBow6G5095 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.8e-07 58.2 90 37.8
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-06 56.6 72 41.7
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.1e-06 55.1 72 41.7
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.1e-06 55.1 72 41.7


User provided reference genes

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