Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 3.4e-212 741.5 403 100.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.3e-147 526.9 296 87.2
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 8.9e-144 514.2 292 85.3
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.2e-143 513.8 345 75.4
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.2e-143 513.8 294 86.1
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.3e-142 510.4 362 73.5
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.3e-142 510.4 294 84.7
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 8.3e-142 507.7 321 78.8
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.4e-141 506.9 293 82.3
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.2e-141 505.8 293 81.6
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.2e-141 505.8 356 74.4
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 5.4e-141 505.0 294 84.4
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 2.0e-140 503.1 294 83.7
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 2.0e-140 503.1 299 83.3
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 2.0e-140 503.1 293 81.2
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 2.0e-140 503.1 297 82.2
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 2.7e-140 502.7 351 72.4
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 7.8e-140 501.1 296 83.8
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.0e-139 500.7 294 82.3
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 1.0e-139 500.7 293 81.2
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.3e-139 500.4 348 73.0
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.7e-139 500.0 296 82.8
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.3e-139 499.6 305 79.3
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 2.3e-139 499.6 336 75.6
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 3.0e-139 499.2 293 80.9
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 3.9e-139 498.8 290 82.4
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 5.0e-139 498.4 296 80.4
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 6.6e-139 498.0 294 82.0
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 1.1e-138 497.3 296 82.1
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.5e-138 496.9 347 72.0
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 1.9e-138 496.5 293 79.9
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 1.9e-138 496.5 288 81.9
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 2.5e-138 496.1 342 74.3
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 2.5e-138 496.1 320 77.8
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 3.3e-138 495.7 318 77.0
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 5.6e-138 495.0 299 81.3
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 5.6e-138 495.0 299 82.6
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 5.6e-138 495.0 319 77.7
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 7.3e-138 494.6 294 81.6
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 9.5e-138 494.2 295 81.7
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.8e-137 492.7 291 83.5
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 2.8e-137 492.7 297 81.1
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 3.6e-137 492.3 340 72.1
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 3.6e-137 492.3 292 83.2
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.3e-136 489.6 345 70.7
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 3.1e-136 489.2 296 81.8
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.2e-136 488.4 321 75.4
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.5e-135 486.9 327 75.5
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 2.0e-135 486.5 299 80.3
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 4.4e-135 485.3 290 81.7
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 7.5e-135 484.6 324 74.1
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 1.7e-134 483.4 296 80.1
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.7e-134 483.4 321 75.1
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 8.3e-134 481.1 296 79.1
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.9e-133 479.9 300 77.0
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 1.9e-133 479.9 300 77.7
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 1.9e-133 479.9 295 79.7
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 3.2e-133 479.2 301 77.1
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 5.4e-133 478.4 300 77.0
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 7.1e-133 478.0 293 77.8
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.2e-132 477.2 294 79.9
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.2e-132 477.2 342 72.5
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.6e-132 476.9 314 75.2
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 4.6e-132 475.3 300 76.0
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.3e-131 473.0 334 72.2
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 3.9e-131 472.2 300 77.0
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 5.1e-131 471.9 373 66.5
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.1e-130 470.7 300 77.7
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.5e-130 470.3 298 79.9
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.5e-130 470.3 334 71.6
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 2.5e-130 469.5 303 78.2
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 4.3e-130 468.8 302 76.8
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 7.3e-130 468.0 302 76.2
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 8.1e-129 464.5 312 74.4
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.4e-128 463.8 300 77.3
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 6.8e-128 461.5 346 69.1
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 6.8e-128 461.5 346 69.1
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 2.7e-124 449.5 300 73.7
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 2.7e-124 449.5 322 71.4
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 2.3e-123 446.4 351 67.5
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 8.9e-120 434.5 324 68.5
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.9e-120 434.5 256 81.6
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 3.4e-119 432.6 258 81.8
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.8e-118 429.1 278 77.0
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 8.4e-118 427.9 316 70.3
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.1e-117 427.6 261 80.8
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.0e-115 421.0 267 77.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 4.5e-111 405.6 262 77.5
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 7.9e-108 394.8 296 66.2
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.3e-107 394.0 238 80.7
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.8e-107 393.7 270 74.1
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 3.3e-106 389.4 291 66.7
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 3.4e-103 379.4 268 72.8
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 2.1e-100 370.2 290 61.7
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.3e-99 367.5 231 77.5
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 2.0e-95 353.6 205 84.4
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.8e-94 349.4 296 60.1
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.1e-93 347.8 209 78.5
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.4e-93 347.4 274 66.4
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 5.5e-93 345.5 203 82.3
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 6.0e-92 342.0 261 67.4
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 1.9e-90 337.0 210 77.6
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 4.3e-90 335.9 255 68.6
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 7.4e-90 335.1 314 59.6
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.3e-86 324.3 200 79.5
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.0e-83 314.7 196 81.6
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.3e-83 314.3 345 54.2
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.2e-79 301.2 339 50.1
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 5.9e-71 272.3 214 65.0
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.3e-67 260.4 146 85.6
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 8.0e-60 235.3 288 45.8
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 3.3e-58 229.9 248 54.0
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 7.5e-58 228.8 132 83.3
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 8.5e-54 215.3 120 87.5
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 7.2e-53 212.2 118 87.3
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 4.7e-52 209.5 141 71.6
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.8e-49 200.3 198 57.1
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 8.3e-49 198.7 138 71.7
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 5.4e-48 196.1 120 77.5
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 5.5e-45 186.0 305 36.7
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 7.2e-45 185.7 127 72.4
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 7.2e-45 185.7 127 72.4
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.8e-44 183.7 162 63.0
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 8.0e-44 182.2 132 67.4
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 7.5e-42 175.6 123 69.9
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 2.5e-37 160.6 143 63.6
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 6.1e-36 156.0 89 84.3
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 1.9e-24 117.9 116 56.9
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 9.9e-18 95.5 61 72.1
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.6e-15 88.2 57 70.2
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 7.8e-15 85.9 81 54.3
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.0e-14 85.5 110 44.5
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 8.6e-14 82.4 57 70.2
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 2.5e-13 80.9 55 69.1
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 4.7e-12 76.6 48 70.8
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 2.9e-09 67.4 36 80.6
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 3.8e-09 67.0 141 33.3
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 1.6e-07 61.6 42 76.2
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 6.6e-06 56.2 61 49.2
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 8.7e-06 55.8 118 32.2


User provided reference genes

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